Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

6212129 .. 6217793

Gene Structure 5665 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG045900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1245 bp

ATGGGTGTGATTAATCTCTACCACGCTTCCTCACTTCACTTCACTAATCCCACTTCCCCAATACCCAGTTCTAAAAGGAACTCTGTTATAGCCATGTCCACCATCCCTGTGCAGCAGCAGCAGCCGCCACTAGTCAATGACGGTCAACACCGCTTGACCGGCGACTCTTTCATCCGACCCCATTTGAGGACCTTGTCTCCTTATCAACCCATTTTACCGTTTGAGGTGTTGTCAGCCCGACTTGGAAGGAAGCCTGAAGATATCATCAAATTAGATGCAAATGAAAACCCTTATGGTCCTCCTCCGGAGGTTTCTGAAGCTTTGGGTGCGTTGAAATTTCCATATATTTATCCAGACCCTGAAAGCCGTCGCTTACGTGCTGCCCTTGCAAAGGATTCAGGCCTTGGTGCTGAATATCTTCTTGTAGGATGTGGTGCGGATGAACTCATTGATTTGATCATGAGATGTGTCCTTGATCCGGGTGACAAGATTGTGGACTGCCCTCCAACATTCACAATGTATGAATTTGATGCTGCAGTCAATGGGGCATCCGTCATTAAAGTGCCGAGGAAGTCAAACTTTAGCTTGAATGTAGAGGTCATCTCAGATATAGTTAAACAAGAAAAACCTAAATGCATATTCCTAACTTCTCCGAACAATCCAGATGGGAGTATAATCAGCGACGACATTCTCTTGAAAATCCTTGAGCTTCCTATATTGGTTGTTCTGGATGAAGCATATATTGAGTTTTCTGGACTTGAATCAAGGATGCAATGGGTGAAGAAACATGAGAATTTAATTGTTCTCCGAACATTCAGCAAACGAGCTGGCTTAGCCGGACTCCGGGTGGGATACGGAGCATTTCCCTTGACAATCATTGAATATCTCTGGAGAGCAAAGCAACCATATAATGTGTCCGTTGCTGCTGAAGTTTCTGCCTGCGCAGCATTGCAGAATCCCACCTATCTTGAGAACGTGAAAAATGCTTTACTGCAAGAAAGGGAGAGGCTTTATCACCTTCTCAAGGAGCTGCCATTTCTCAAGCCTTATCCTAGCTATTCCAATTTCATTCTTTGTGAGGTCACATCCGGAATGGATGCTAAGAAACTCAAGGAGGACCTTGCAAAAATGGGTGTGATGATTCGTCATTACAACAACAAGGAGTTGAGCGGTTATGTTCGCGTATCAGTTGGGAAGCCTGAACACACAGATGCCTTGATTGATTGCCTCAGACGCTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

414

Amino Acids

46.22

Weight (kDa)

7.08

Isoelectric Point (pI)

42.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	87 - 408	1.9e-53	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	943
AccBSI	CCGCTC	1 cut(s)	1170
AccII	CGCG	1 cut(s)	1182
AccIII	TCCGGA	2 cut(s)	304, 1088
AciI	CCGC	4 cut(s)	125, 151, 437, 1170
AclWI	GGATC	1 cut(s)	470
AcsI	RAATTY	3 cut(s)	335, 524, 793
AcuI	CTGAAG	3 cut(s)	276, 336, 948
AfiI	CCNNNNNNNGG	5 cut(s)	186, 391, 478, 843, 1024
AgsI	TTSAA	5 cut(s)	334, 589, 697, 761, 881
AhlI	ACTAGT	1 cut(s)	130
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AluBI	AGCT	6 cut(s)	320, 585, 709, 827, 1030, 1056
AluI	AGCT	6 cut(s)	320, 585, 709, 827, 1030, 1056
Alw26I	GTCTC	1 cut(s)	201
AlwI	GGATC	1 cut(s)	470
AlwNI	CAGNNNCTG	1 cut(s)	359
Aor13HI	TCCGGA	2 cut(s)	304, 1088
AoxI	GGCC	1 cut(s)	400
ApeKI	GCWGC	9 cut(s)	112, 115, 118, 121, 380, 533, 923, 944, 1030
ApoI	RAATTY	3 cut(s)	335, 524, 793
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	417
AspLEI	GCGC	1 cut(s)	944
AspS9I	GGNCC	3 cut(s)	189, 296, 1117
AsuC2I	CCSGG	2 cut(s)	480, 845
AsuHPI	GGTGA	3 cut(s)	494, 790, 1007
AvaII	GGWCC	3 cut(s)	189, 296, 1117
BbvI	GCAGC	9 cut(s)	124, 127, 130, 133, 367, 520, 910, 956, 1017
BccI	CCATC	2 cut(s)	110, 659
BceAI	ACGGC	1 cut(s)	351
BciVI	GTATCC	1 cut(s)	845
BclI	TGATCA	1 cut(s)	456
BcnI	CCSGG	2 cut(s)	480, 845
BcoDI	GTCTC	1 cut(s)	201
BcuI	ACTAGT	1 cut(s)	130
BfaI	CTAG	2 cut(s)	131, 1053
BfmI	CTRYAG	1 cut(s)	534
BfuI	GTATCC	1 cut(s)	845
BlpI	GCTNAGC	1 cut(s)	832
Bme1390I	CCNGG	2 cut(s)	480, 845
Bme18I	GGWCC	3 cut(s)	189, 296, 1117
BmgT120I	GGNCC	3 cut(s)	189, 296, 1117
BmrFI	CCNGG	2 cut(s)	480, 845
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	6 cut(s)	265, 520, 557, 759, 1087, 1201
BmuI	ACTGGG	1 cut(s)	60
BplI	GAGNNNNNCTC	2 cut(s)	587, 619
BpmI	CTGGAG	1 cut(s)	910
Bpu1102I	GCTNAGC	1 cut(s)	832
BpuEI	CTTGAG	5 cut(s)	725, 989, 1007, 1025, 1094
BpuMI	CCSGG	2 cut(s)	480, 845
BsaAI	YACGTR	1 cut(s)	377
BsaJI	CCNNGG	2 cut(s)	403, 566
BsaWI	WCCGGW	2 cut(s)	304, 1088
BsaXI	ACNNNNNCTCC	2 cut(s)	181, 211
Bsc4I	CCNNNNNNNGG	5 cut(s)	186, 391, 478, 843, 1024
Bse118I	RCCGGY	1 cut(s)	158
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	779, 947
BseAI	TCCGGA	2 cut(s)	304, 1088
BseDI	CCNNGG	2 cut(s)	403, 566
BseGI	GGATG	9 cut(s)	102, 171, 434, 445, 548, 736, 774, 1085, 1102
BseLI	CCNNNNNNNGG	5 cut(s)	186, 391, 478, 843, 1024
BseMI	GCAATG	2 cut(s)	779, 947
BseMII	CTCAG	2 cut(s)	618, 1243
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	291
BseXI	GCAGC	9 cut(s)	124, 127, 130, 133, 367, 520, 910, 956, 1017
BsgI	GTGCAG	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	1182
BshFI	GGCC	1 cut(s)	402
BsiSI	CCGG	6 cut(s)	159, 305, 479, 837, 844, 1089
BslI	CCNNNNNNNGG	5 cut(s)	186, 391, 478, 843, 1024
BsmAI	GTCTC	1 cut(s)	201
BsnI	GGCC	1 cut(s)	402
Bsp13I	TCCGGA	2 cut(s)	304, 1088
Bsp143I	GATC	2 cut(s)	456, 475
Bsp1720I	GCTNAGC	1 cut(s)	832
BspACI	CCGC	4 cut(s)	125, 151, 437, 1170
BspANI	GGCC	1 cut(s)	402
BspCNI	CTCAG	2 cut(s)	617, 1242
BspEI	TCCGGA	2 cut(s)	304, 1088
BspFNI	CGCG	1 cut(s)	1182
BspHI	TCATGA	1 cut(s)	459
BspMAI	CTGCAG	1 cut(s)	538
BspPI	GGATC	1 cut(s)	470
BsrBI	CCGCTC	1 cut(s)	1170
BsrDI	GCAATG	2 cut(s)	779, 947
BsrFI	RCCGGY	1 cut(s)	158
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	158
BssECI	CCNNGG	2 cut(s)	403, 566
BssMI	GATC	2 cut(s)	456, 475
BssT1I	CCWWGG	1 cut(s)	403
Bst4CI	ACNGT	2 cut(s)	143, 219
BstBAI	YACGTR	1 cut(s)	377
BstC8I	GCNNGC	2 cut(s)	829, 940
BstDEI	CTNAG	4 cut(s)	604, 832, 1101, 1229
BstENI	CCTNNNNNAGG	2 cut(s)	389, 1022
BstF5I	GGATG	9 cut(s)	102, 171, 434, 445, 548, 736, 774, 1085, 1102
BstFNI	CGCG	1 cut(s)	1182
BstHHI	GCGC	1 cut(s)	944
BstKTI	GATC	2 cut(s)	459, 478
BstMAI	GTCTC	1 cut(s)	201
BstMBI	GATC	2 cut(s)	456, 475
BstMWI	GCNNNNNNNGC	9 cut(s)	118, 121, 124, 159, 326, 386, 833, 944, 1233
BstSCI	CCNGG	2 cut(s)	478, 843
BstSFI	CTRYAG	1 cut(s)	534
BstUI	CGCG	1 cut(s)	1182
BstV1I	GCAGC	9 cut(s)	124, 127, 130, 133, 367, 520, 910, 956, 1017
BsuI	GTATCC	1 cut(s)	845
BsuRI	GGCC	1 cut(s)	402
BtsCI	GGATG	9 cut(s)	102, 171, 434, 445, 548, 736, 774, 1085, 1102
Cac8I	GCNNGC	2 cut(s)	829, 940
CaiI	CAGNNNCTG	1 cut(s)	359
CciI	TCATGA	1 cut(s)	459
CfoI	GCGC	1 cut(s)	944
Cfr10I	RCCGGY	1 cut(s)	158
Cfr13I	GGNCC	3 cut(s)	189, 296, 1117
CspCI	CAANNNNNGTGG	2 cut(s)	949, 984
CviAII	CATG	3 cut(s)	94, 460, 788
DdeI	CTNAG	4 cut(s)	604, 832, 1101, 1229
DpnI	GATC	2 cut(s)	458, 477
DpnII	GATC	2 cut(s)	456, 475
Eco130I	CCWWGG	1 cut(s)	403
Eco147I	AGGCCT	1 cut(s)	402
Eco32I	GATATC	1 cut(s)	262
Eco47I	GGWCC	3 cut(s)	189, 296, 1117
Eco57I	CTGAAG	3 cut(s)	276, 336, 948
EcoNI	CCTNNNNNAGG	2 cut(s)	389, 1022
EcoO109I	RGGNCCY	2 cut(s)	189, 1117
EcoRV	GATATC	1 cut(s)	262
EcoT14I	CCWWGG	1 cut(s)	403
EcoT22I	ATGCAT	1 cut(s)	638
ErhI	CCWWGG	1 cut(s)	403
FaeI	CATG	3 cut(s)	97, 463, 791
FalI	AAGNNNNNCTT	2 cut(s)	563, 595
FatI	CATG	3 cut(s)	93, 459, 787
FbaI	TGATCA	1 cut(s)	456
FokI	GGATG	9 cut(s)	89, 158, 441, 452, 535, 743, 781, 1072, 1109
FspBI	CTAG	2 cut(s)	131, 1053
FspI	TGCGCA	1 cut(s)	943
GlaI	GCGC	1 cut(s)	943
GsuI	CTGGAG	1 cut(s)	910
HaeIII	GGCC	1 cut(s)	402
HapII	CCGG	6 cut(s)	159, 305, 479, 837, 844, 1089
HhaI	GCGC	1 cut(s)	944
Hin1II	CATG	3 cut(s)	97, 463, 791
Hin6I	GCGC	1 cut(s)	942
HinP1I	GCGC	1 cut(s)	942
HincII	GTYRAC	1 cut(s)	146
HindII	GTYRAC	1 cut(s)	146
HindIII	AAGCTT	1 cut(s)	318
HinfI	GANTC	6 cut(s)	164, 395, 761, 840, 955, 1141
HpaII	CCGG	6 cut(s)	159, 305, 479, 837, 844, 1089
HphI	GGTGA	3 cut(s)	494, 790, 1007
Hpy166II	GTNNAC	3 cut(s)	99, 146, 496
Hpy188I	TCNGA	6 cut(s)	176, 316, 607, 654, 809, 1232
Hpy8I	GTNNAC	3 cut(s)	99, 146, 496
Hpy99I	CGWCG	2 cut(s)	372, 686
HpyAV	CCTTC	2 cut(s)	240, 1028
HpyCH4III	ACNGT	2 cut(s)	143, 219
HpyCH4IV	ACGT	2 cut(s)	376, 975
HpyCH4V	TGCA	9 cut(s)	112, 278, 389, 536, 636, 772, 952, 994, 1124
HpyF10VI	GCNNNNNNNGC	9 cut(s)	118, 121, 124, 159, 326, 386, 833, 944, 1233
HpyF3I	CTNAG	4 cut(s)	604, 832, 1101, 1229
HpySE526I	ACGT	2 cut(s)	376, 975
Hsp92II	CATG	3 cut(s)	97, 463, 791
HspAI	GCGC	1 cut(s)	942
Kpn2I	TCCGGA	2 cut(s)	304, 1088
Ksp22I	TGATCA	1 cut(s)	456
Kzo9I	GATC	2 cut(s)	456, 475
LmnI	GCTCC	2 cut(s)	857, 1027
Lsp1109I	GCAGC	9 cut(s)	124, 127, 130, 133, 367, 520, 910, 956, 1017
LweI	GCATC	6 cut(s)	265, 520, 557, 759, 1087, 1201
MaeI	CTAG	2 cut(s)	131, 1053
MaeII	ACGT	2 cut(s)	376, 975
MaeIII	GTNAC	2 cut(s)	482, 1081
MalI	GATC	2 cut(s)	458, 477
MbiI	CCGCTC	1 cut(s)	1170
MboI	GATC	2 cut(s)	456, 475
MboII	GAAGA	3 cut(s)	269, 410, 793
MluCI	AATT	6 cut(s)	269, 335, 524, 793, 798, 1063
MlyI	GAGTC	2 cut(s)	158, 834
MmeI	TCCRAC	2 cut(s)	199, 530
Mph1103I	ATGCAT	1 cut(s)	638
MroI	TCCGGA	2 cut(s)	304, 1088
MroXI	GAANNNNTTC	1 cut(s)	417
MseI	TTAA	5 cut(s)	12, 558, 615, 797, 1243
MslI	CAYNNNNRTG	3 cut(s)	107, 560, 1209
MspI	CCGG	6 cut(s)	159, 305, 479, 837, 844, 1089
MspR9I	CCNGG	2 cut(s)	480, 845
MvnI	CGCG	1 cut(s)	1182
MwoI	GCNNNNNNNGC	9 cut(s)	118, 121, 124, 159, 326, 386, 833, 944, 1233
NciI	CCSGG	2 cut(s)	480, 845
NdeII	GATC	2 cut(s)	456, 475
NlaIII	CATG	3 cut(s)	97, 463, 791
NmeAIII	GCCGAG	1 cut(s)	591
NmuCI	GTSAC	2 cut(s)	482, 1081
NsbI	TGCGCA	1 cut(s)	943
NsiI	ATGCAT	1 cut(s)	638
PagI	TCATGA	1 cut(s)	459
PceI	AGGCCT	1 cut(s)	402
PdmI	GAANNNNTTC	1 cut(s)	417
PfeI	GAWTC	4 cut(s)	395, 761, 955, 1141
PflFI	GACNNNGTC	1 cut(s)	193
PleI	GAGTC	2 cut(s)	158, 834
PpsI	GAGTC	2 cut(s)	158, 834
Ppu21I	YACGTR	1 cut(s)	377
PpuMI	RGGWCCY	2 cut(s)	189, 1117
PshBI	ATTAAT	1 cut(s)	12
Psp5II	RGGWCCY	2 cut(s)	189, 1117
PspPI	GGNCC	3 cut(s)	189, 296, 1117
PspPPI	RGGWCCY	2 cut(s)	189, 1117
PstI	CTGCAG	1 cut(s)	538
PstNI	CAGNNNCTG	1 cut(s)	359
PsyI	GACNNNGTC	1 cut(s)	193
RseI	CAYNNNNRTG	3 cut(s)	107, 560, 1209
SaqAI	TTAA	5 cut(s)	12, 558, 615, 797, 1243
Sau3AI	GATC	2 cut(s)	456, 475
Sau96I	GGNCC	3 cut(s)	189, 296, 1117
SchI	GAGTC	2 cut(s)	158, 834
ScrFI	CCNGG	2 cut(s)	480, 845
SfaNI	GCATC	6 cut(s)	265, 520, 557, 759, 1087, 1201
SfcI	CTRYAG	1 cut(s)	534
SinI	GGWCC	3 cut(s)	189, 296, 1117
SmiMI	CAYNNNNRTG	3 cut(s)	107, 560, 1209
SmlI	CTYRAG	5 cut(s)	704, 968, 1022, 1040, 1109
SmoI	CTYRAG	5 cut(s)	704, 968, 1022, 1040, 1109
SpeI	ACTAGT	1 cut(s)	130
Sse9I	AATT	6 cut(s)	269, 335, 524, 793, 798, 1063
SseBI	AGGCCT	1 cut(s)	402
SsiI	CCGC	4 cut(s)	125, 151, 437, 1170
SspMI	CTAG	2 cut(s)	131, 1053
StuI	AGGCCT	1 cut(s)	402
StyD4I	CCNGG	2 cut(s)	478, 843
StyI	CCWWGG	1 cut(s)	403
TaaI	ACNGT	2 cut(s)	143, 219
TaiI	ACGT	2 cut(s)	379, 978
TasI	AATT	6 cut(s)	269, 335, 524, 793, 798, 1063
TauI	GCSGC	1 cut(s)	127
TfiI	GAWTC	4 cut(s)	395, 761, 955, 1141
Tru1I	TTAA	5 cut(s)	12, 558, 615, 797, 1243
Tru9I	TTAA	5 cut(s)	12, 558, 615, 797, 1243
TseFI	GTSAC	2 cut(s)	482, 1081
TseI	GCWGC	9 cut(s)	112, 115, 118, 121, 380, 533, 923, 944, 1030
Tsp45I	GTSAC	2 cut(s)	482, 1081
TspDTI	ATGAA	6 cut(s)	160, 297, 456, 537, 747, 1057
TspGWI	ACGGA	3 cut(s)	541, 870, 907
Tth111I	GACNNNGTC	1 cut(s)	193
VpaK11BI	GGWCC	3 cut(s)	189, 296, 1117
VspI	ATTAAT	1 cut(s)	12
XagI	CCTNNNNNAGG	2 cut(s)	389, 1022
XapI	RAATTY	3 cut(s)	335, 524, 793
XmnI	GAANNNNTTC	1 cut(s)	417
XspI	CTAG	2 cut(s)	131, 1053
Zsp2I	ATGCAT	1 cut(s)	638

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.