Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

3247847 .. 3250964

Gene Structure 3118 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G10330.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGTGTGATCAATGTTCAGGGCTCTCCATCGTTCTCTATTCATTCTTCAGAGTCAAATCTTCGAAAGTCTCGAGCTTTGAAGAAACCCTTTTGCTCAATCCGGAATAGGGTTTATTGTGCTCAGTCTTCAAGTGCAGCTGTAGACGAATCCAAGAATATAACTATGGGAGACTCTTTTATCCGTCCACATTTGAGACAATTGGCTGCTTATCAGCCAATTTTACCCTTTGAGGTATTGTCTGCTCAATTAGGAAGAAAGCCTGAGGATATTGTCAAGTTAGATGCTAATGAGAACCCATATGGTCCTCCTCCAGAGGTTTTTGAAGCATTAGGCAATATGAAATTCCCTTACGTTTATCCTGATCCACAAAGTCGTAGACTTCGTGATGCACTGGCTCAAGACTCTGGTTTGGAGTCTGAATACATACTTGTAGGCTGTGGTGCTGACGAACTTATTGATTTGATCATGAGATGCGTGTTAGATCCTGGGGAGAAGATTATAGATTGTCCTCCAACTTTCTCAATGTATGTGTTTGATGCGGCTGTGAATGGAGCAGGTGTCATTAAAGTTCCAAGAAACCCCGATTTCAGCTTGAATGTAGACCGCATCGCTGAAGTTGTAGAACTAGAAAAACCCAAATGCATATTCCTAACTTCTCCCAACAATCCAGATGGGAGTATCATCAGCGAGGACGATCTGTTGAAGATTCTAGAAATGCCAATACTTGTTGTTCTAGATGAAGCTTACATCGAATTCTCAGGAGTTGAATCACGCATGAAATGGGTGAAGAAGTATGAAAACCTTATCGTTCTCCGCACATTTAGCAAACGAGCTGGTTTAGCCGGGCTTCGAGTTGGATATGGAGCGTTTCCGTTGAGTATAATCGAATACCTGTGGAGAGCAAAGCAACCGTACAATGTCTCTGTTGCAGGGGAAGTAGCTGCTTTAGCAGCACTCTCAAACGGGAAATACTTGGAAGATGTGAGAGACGCCTTGGTACGGGAAAGAGAGAGACTGTTCGGGCTATTAAAAGAAGTTCCTTTCTTGAATCCATATCCGAGCTATTCGAATTTCATTCTCTGTGAGGTTACATCTGGAATGGATGCAAAGAAGCTGAAAGAGGATTTGGCGAAAATGGGTGTGATGGTTCGTCATTACAACAGTCAAGAGCTTAAAGGTTATGTTCGAGTTTCTGCTGGAAAGCCTGAACATACTGATGTTCTCATGGAGTGTCTTAAGCAATTTTATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

417

Amino Acids

46.63

Weight (kDa)

5.81

Isoelectric Point (pI)

42.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	7 - 298	1.4e-52	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
AccI	GTMKAC	3 cut(s)	144, 379, 603
AccIII	TCCGGA	1 cut(s)	102
AciI	CCGC	3 cut(s)	542, 607, 817
AclWI	GGATC	2 cut(s)	359, 479
AcsI	RAATTY	3 cut(s)	344, 755, 1072
AcuI	CTGAAG	2 cut(s)	33, 636
AcyI	GRCGYC	1 cut(s)	993
AfaI	GTAC	2 cut(s)	917, 1002
AfiI	CCNNNNNNNGG	2 cut(s)	109, 1002
AflII	CTTAAG	1 cut(s)	1238
AgsI	TTSAA	7 cut(s)	82, 132, 326, 598, 706, 770, 1051
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	4 cut(s)	632, 664, 1112, 1144
AluBI	AGCT	9 cut(s)	77, 140, 594, 746, 836, 944, 1065, 1117, 1174
AluI	AGCT	9 cut(s)	77, 140, 594, 746, 836, 944, 1065, 1117, 1174
Alw21I	GWGCWC	1 cut(s)	124
Alw26I	GTCTC	6 cut(s)	75, 165, 190, 928, 984, 1009
AlwI	GGATC	2 cut(s)	359, 479
Ama87I	CYCGRG	1 cut(s)	72
Aor13HI	TCCGGA	1 cut(s)	102
ApeKI	GCWGC	4 cut(s)	137, 206, 944, 953
ApoI	RAATTY	3 cut(s)	344, 755, 1072
AspS9I	GGNCC	1 cut(s)	305
AsuC2I	CCSGG	1 cut(s)	847
AsuHPI	GGTGA	1 cut(s)	799
AsuII	TTCGAA	2 cut(s)	64, 1070
AvaI	CYCGRG	1 cut(s)	72
AvaII	GGWCC	1 cut(s)	305
AxyI	CCTNAGG	1 cut(s)	264
BanII	GRGCYC	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	120
Bbv12I	GWGCWC	1 cut(s)	124
BbvI	GCAGC	4 cut(s)	149, 193, 931, 965
BccI	CCATC	3 cut(s)	37, 668, 1141
BciT130I	CCWGG	1 cut(s)	489
BclI	TGATCA	2 cut(s)	9, 465
BcnI	CCSGG	1 cut(s)	847
BcoDI	GTCTC	6 cut(s)	75, 165, 190, 928, 984, 1009
BfaI	CTAG	3 cut(s)	629, 713, 737
BfmI	CTRYAG	1 cut(s)	141
BfrI	CTTAAG	1 cut(s)	1238
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	5 cut(s)	138, 207, 543, 945, 954
BlsI	GCNGC	5 cut(s)	139, 208, 544, 946, 955
Bme1390I	CCNGG	2 cut(s)	489, 847
Bme18I	GGWCC	1 cut(s)	305
BmeT110I	CYCGRG	1 cut(s)	72
BmgT120I	GGNCC	1 cut(s)	305
BmrFI	CCNGG	2 cut(s)	489, 847
BmsI	GCATC	6 cut(s)	274, 379, 464, 529, 618, 1096
BpiI	GAAGAC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	297
Bpu14I	TTCGAA	2 cut(s)	64, 1070
BpuEI	CTTGAG	1 cut(s)	384
BpuMI	CCSGG	1 cut(s)	847
BsaHI	GRCGYC	1 cut(s)	993
BsaJI	CCNNGG	2 cut(s)	488, 996
BsaWI	WCCGGW	1 cut(s)	102
BsaXI	ACNNNNNCTCC	2 cut(s)	546, 576
Bsc4I	CCNNNNNNNGG	2 cut(s)	109, 1002
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	264
BseAI	TCCGGA	1 cut(s)	102
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	488, 996
BseGI	GGATG	1 cut(s)	1111
BseLI	CCNNNNNNNGG	2 cut(s)	109, 1002
BseMII	CTCAG	3 cut(s)	137, 255, 774
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	4 cut(s)	149, 193, 931, 965
BsgI	GTGCAG	1 cut(s)	156
BsiHKAI	GWGCWC	1 cut(s)	124
BsiHKCI	CYCGRG	1 cut(s)	72
BsiSI	CCGG	2 cut(s)	103, 846
BslI	CCNNNNNNNGG	2 cut(s)	109, 1002
BsmAI	GTCTC	6 cut(s)	75, 165, 190, 928, 984, 1009
BsmBI	CGTCTC	1 cut(s)	984
BsoBI	CYCGRG	1 cut(s)	72
Bsp119I	TTCGAA	2 cut(s)	64, 1070
Bsp1286I	GDGCHC	2 cut(s)	26, 124
Bsp13I	TCCGGA	1 cut(s)	102
Bsp143I	GATC	5 cut(s)	9, 364, 465, 484, 697
BspACI	CCGC	3 cut(s)	542, 607, 817
BspCNI	CTCAG	3 cut(s)	136, 256, 773
BspEI	TCCGGA	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	468
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	359, 479
BspT104I	TTCGAA	2 cut(s)	64, 1070
BspTI	CTTAAG	1 cut(s)	1238
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	2 cut(s)	488, 996
BssMI	GATC	5 cut(s)	9, 364, 465, 484, 697
BssNI	GRCGYC	1 cut(s)	993
BssT1I	CCWWGG	1 cut(s)	996
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	3 cut(s)	915, 1020, 1166
BstACI	GRCGYC	1 cut(s)	993
BstAFI	CTTAAG	1 cut(s)	1238
BstBI	TTCGAA	2 cut(s)	64, 1070
BstDEI	CTNAG	3 cut(s)	123, 264, 760
BstF5I	GGATG	1 cut(s)	1111
BstKTI	GATC	5 cut(s)	12, 367, 468, 487, 700
BstMAI	GTCTC	6 cut(s)	75, 165, 190, 928, 984, 1009
BstMBI	GATC	5 cut(s)	9, 364, 465, 484, 697
BstMWI	GCNNNNNNNGC	4 cut(s)	825, 842, 950, 953
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	487, 845
BstSFI	CTRYAG	1 cut(s)	141
BstV1I	GCAGC	4 cut(s)	149, 193, 931, 965
BstV2I	GAAGAC	1 cut(s)	120
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
Bsu36I	CCTNAGG	1 cut(s)	264
BtgZI	GCGATG	1 cut(s)	595
BtsCI	GGATG	1 cut(s)	1111
BtsIMutI	CAGTG	1 cut(s)	392
BveI	ACCTGC	1 cut(s)	548
CciI	TCATGA	1 cut(s)	468
Cfr13I	GGNCC	1 cut(s)	305
CseI	GACGC	1 cut(s)	1001
Csp6I	GTAC	2 cut(s)	916, 1001
CviAII	CATG	3 cut(s)	469, 778, 1228
CviQI	GTAC	2 cut(s)	916, 1001
DdeI	CTNAG	3 cut(s)	123, 264, 760
DpnI	GATC	5 cut(s)	11, 366, 467, 486, 699
DpnII	GATC	5 cut(s)	9, 364, 465, 484, 697
Eco130I	CCWWGG	1 cut(s)	996
Eco24I	GRGCYC	1 cut(s)	26
Eco47I	GGWCC	1 cut(s)	305
Eco57I	CTGAAG	2 cut(s)	33, 636
Eco81I	CCTNAGG	1 cut(s)	264
Eco88I	CYCGRG	1 cut(s)	72
EcoRI	GAATTC	1 cut(s)	755
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	996
EcoT22I	ATGCAT	1 cut(s)	647
EcoT38I	GRGCYC	1 cut(s)	26
ErhI	CCWWGG	1 cut(s)	996
Esp3I	CGTCTC	1 cut(s)	984
FaeI	CATG	3 cut(s)	472, 781, 1231
FalI	AAGNNNNNCTT	2 cut(s)	74, 106
FatI	CATG	3 cut(s)	468, 777, 1227
FauNDI	CATATG	1 cut(s)	301
FbaI	TGATCA	2 cut(s)	9, 465
FblI	GTMKAC	3 cut(s)	144, 379, 603
Fnu4HI	GCNGC	5 cut(s)	138, 207, 543, 945, 954
FokI	GGATG	1 cut(s)	1118
FriOI	GRGCYC	1 cut(s)	26
Fsp4HI	GCNGC	5 cut(s)	138, 207, 543, 945, 954
FspBI	CTAG	3 cut(s)	629, 713, 737
GluI	GCNGC	5 cut(s)	138, 207, 543, 945, 954
GsuI	CTGGAG	1 cut(s)	297
HapII	CCGG	2 cut(s)	103, 846
HgaI	GACGC	1 cut(s)	1001
Hin1I	GRCGYC	1 cut(s)	993
Hin1II	CATG	3 cut(s)	472, 781, 1231
HindIII	AAGCTT	1 cut(s)	744
HinfI	GANTC	8 cut(s)	53, 149, 173, 404, 416, 709, 770, 1051
HpaII	CCGG	2 cut(s)	103, 846
HphI	GGTGA	1 cut(s)	799
Hpy166II	GTNNAC	4 cut(s)	145, 188, 380, 604
Hpy188I	TCNGA	3 cut(s)	52, 421, 1062
Hpy8I	GTNNAC	4 cut(s)	145, 188, 380, 604
HpyCH4III	ACNGT	3 cut(s)	915, 1020, 1166
HpyCH4IV	ACGT	1 cut(s)	354
HpyCH4V	TGCA	5 cut(s)	137, 392, 645, 932, 1109
HpyF10VI	GCNNNNNNNGC	4 cut(s)	825, 842, 950, 953
HpyF3I	CTNAG	3 cut(s)	123, 264, 760
HpySE526I	ACGT	1 cut(s)	354
Hsp92I	GRCGYC	1 cut(s)	993
Hsp92II	CATG	3 cut(s)	472, 781, 1231
Kpn2I	TCCGGA	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	9, 465
Kzo9I	GATC	5 cut(s)	9, 364, 465, 484, 697
LmnI	GCTCC	2 cut(s)	554, 866
Lsp1109I	GCAGC	4 cut(s)	149, 193, 931, 965
LweI	GCATC	6 cut(s)	274, 379, 464, 529, 618, 1096
MaeI	CTAG	3 cut(s)	629, 713, 737
MaeII	ACGT	1 cut(s)	354
MaeIII	GTNAC	1 cut(s)	1090
MalI	GATC	5 cut(s)	11, 366, 467, 486, 699
MboI	GATC	5 cut(s)	9, 364, 465, 484, 697
MboII	GAAGA	9 cut(s)	39, 53, 94, 120, 267, 508, 718, 802, 992
MfeI	CAATTG	1 cut(s)	200
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	2 cut(s)	26, 124
MluCI	AATT	7 cut(s)	200, 219, 248, 344, 755, 1072, 1244
MlyI	GAGTC	4 cut(s)	62, 167, 398, 425
MmeI	TCCRAC	2 cut(s)	539, 838
MnlI	CCTC	9 cut(s)	226, 259, 310, 318, 321, 522, 685, 1081, 1117
Mph1103I	ATGCAT	1 cut(s)	647
MroI	TCCGGA	1 cut(s)	102
MseI	TTAA	4 cut(s)	567, 1031, 1176, 1239
MslI	CAYNNNNRTG	1 cut(s)	1218
MspA1I	CMGCKG	1 cut(s)	140
MspCI	CTTAAG	1 cut(s)	1238
MspI	CCGG	2 cut(s)	103, 846
MspR9I	CCNGG	2 cut(s)	489, 847
MunI	CAATTG	1 cut(s)	200
MvaI	CCWGG	1 cut(s)	489
MwoI	GCNNNNNNNGC	4 cut(s)	825, 842, 950, 953
NciI	CCSGG	1 cut(s)	847
NdeI	CATATG	1 cut(s)	301
NdeII	GATC	5 cut(s)	9, 364, 465, 484, 697
NlaIII	CATG	3 cut(s)	472, 781, 1231
NsiI	ATGCAT	1 cut(s)	647
NspV	TTCGAA	2 cut(s)	64, 1070
PaeR7I	CTCGAG	1 cut(s)	72
PagI	TCATGA	1 cut(s)	468
PaqCI	CACCTGC	1 cut(s)	548
PcsI	WCGNNNNNNNCGW	2 cut(s)	70, 382
PfeI	GAWTC	4 cut(s)	149, 709, 770, 1051
PkrI	GCNGC	5 cut(s)	139, 208, 544, 946, 955
PleI	GAGTC	4 cut(s)	61, 167, 398, 424
PpsI	GAGTC	4 cut(s)	61, 167, 398, 424
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspPI	GGNCC	1 cut(s)	305
PsuI	RGATCY	1 cut(s)	484
PvuII	CAGCTG	1 cut(s)	140
RsaI	GTAC	2 cut(s)	917, 1002
RsaNI	GTAC	2 cut(s)	916, 1001
RseI	CAYNNNNRTG	1 cut(s)	1218
SaqAI	TTAA	4 cut(s)	567, 1031, 1176, 1239
SatI	GCNGC	5 cut(s)	138, 207, 543, 945, 954
Sau3AI	GATC	5 cut(s)	9, 364, 465, 484, 697
Sau96I	GGNCC	1 cut(s)	305
SchI	GAGTC	4 cut(s)	62, 167, 398, 425
ScrFI	CCNGG	2 cut(s)	489, 847
SduI	GDGCHC	2 cut(s)	26, 124
SfaNI	GCATC	6 cut(s)	274, 379, 464, 529, 618, 1096
SfcI	CTRYAG	1 cut(s)	141
Sfr274I	CTCGAG	1 cut(s)	72
SfuI	TTCGAA	2 cut(s)	64, 1070
SinI	GGWCC	1 cut(s)	305
SlaI	CTCGAG	1 cut(s)	72
SmiMI	CAYNNNNRTG	1 cut(s)	1218
SmlI	CTYRAG	3 cut(s)	72, 399, 1238
SmoI	CTYRAG	3 cut(s)	72, 399, 1238
Sse9I	AATT	7 cut(s)	200, 219, 248, 344, 755, 1072, 1244
SsiI	CCGC	3 cut(s)	542, 607, 817
SspMI	CTAG	3 cut(s)	629, 713, 737
StyD4I	CCNGG	2 cut(s)	487, 845
StyI	CCWWGG	1 cut(s)	996
TaaI	ACNGT	3 cut(s)	915, 1020, 1166
TaiI	ACGT	1 cut(s)	357
TaqI	TCGA	7 cut(s)	64, 73, 753, 853, 888, 1070, 1189
TasI	AATT	7 cut(s)	200, 219, 248, 344, 755, 1072, 1244
TauI	GCSGC	1 cut(s)	545
TfiI	GAWTC	4 cut(s)	149, 709, 770, 1051
Tru1I	TTAA	4 cut(s)	567, 1031, 1176, 1239
Tru9I	TTAA	4 cut(s)	567, 1031, 1176, 1239
TscAI	CASTG	1 cut(s)	399
TseI	GCWGC	4 cut(s)	137, 206, 944, 953
TspDTI	ATGAA	6 cut(s)	32, 356, 756, 794, 813, 1066
TspGWI	ACGGA	2 cut(s)	173, 864
TspRI	CASTG	1 cut(s)	399
Vha464I	CTTAAG	1 cut(s)	1238
VpaK11BI	GGWCC	1 cut(s)	305
XapI	RAATTY	3 cut(s)	344, 755, 1072
XbaI	TCTAGA	2 cut(s)	712, 736
XhoI	CTCGAG	1 cut(s)	72
XmiI	GTMKAC	3 cut(s)	144, 379, 603
XspI	CTAG	3 cut(s)	629, 713, 737
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.