Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

20177042 .. 20181483

Gene Structure 4442 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G194700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGCTGATGGGTGTGATTGATATATACAACGCTTCCTCACTACGATTGACCAATATCAGCATCAGTCGCAGACCCAGTTGTGGAACTGAAGGGAACAAGAGGACGGTGGTGGCTATGGCTTCCACAACCCCTGTGCAGAAAAAAGTTAGTGAGGTTCAACAGCGTTTGACCGGTGACTCGTTCATTCGACCCCATTTGAGGAATTTGTCTCCTTATCAGTCCATTTTGCCATTTGAGGTTTTGTCGGCCCAACTTGGAAGGAAGCCTGAGGACATTATCAAATTAGATGCAAATGAAAACCCTTATGGTCCTCCACCGGAGGTTTTTGAAGCTTTGGGTGCACTGAAATTCCCATATATCTATCCCGACCCTGAAAGCCGTCGGTTACGTGCTGCCCTTGCAAAGGATTCAGGGCTTGAATCTGATTATATTCTTGTTGGGTGTGGTGCGGATGAGCTCATTGATTTGATTATGAGATGTGTGCTTGATCCTGGTGACAAGATTGTTGACTGCCCTCCAACGTTCACAATGTATGAATTTGATGCTGCAGTAAATGGGGCTTCTGTCATTAAAGTGCCAAGGAAGTCGGATTTTAGCTTGGATGTTGATGTCATTTCAGAAGTTGTTGTACAGGAAAAACCTAAATGCATATTCCTAACTTCTCCCAACAATCCAGATGGGAGTATAATCAGTGACGAGATTCTCTTGAAAGTCCTTGAGCTTCCTGTACTGGTGGTGCTGGATGAAGCATATATTGAGTTTTCAGGACTTGAATCACGGATGCAGTGGGTGAAAAAGCATGAGAATCTAATTGTACTTCGGACTTTTAGCAAACGAGCTGGCTTAGCTGGACTCCGCGTGGGATATGGAGCATTTCCATTGACCATCATTGAATATCTTTGGAGAGCAAAGCAACCATATAATGTGTCTGTTACTGCTGAAGTTTCTGCTTGTGCAGCATTGCAGAATCCCACCTATCTAGAGACTGTGAAAGACGCTTTGCTACAAGAAAGGGAGAGGCTTTACAACCTTCTAAAGGAGCTGCCATTTCTCAACCCATATCCAAGCTATTCCAATTTTATTCTTTGTGAGGTTACATCGGGAGTGGATGCTAAGAAGCTGAAGGAGGACCTAGCAAAAATGGGTGTGATGATTCGTCACTACAACAACAAAGAGTTGAGGGGTTATGTTCGCATATCTGTCGGGAAGCCTGAACACACGGATACATTGATTGATTGCCTCAGACGCTTGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

419

Amino Acids

46.76

Weight (kDa)

5.98

Isoelectric Point (pI)

44.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	858
AciI	CCGC	2 cut(s)	449, 856
AclI	AACGTT	1 cut(s)	521
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	3 cut(s)	202, 347, 536
AcuI	CTGAAG	3 cut(s)	108, 960, 1142
AfaI	GTAC	3 cut(s)	630, 729, 816
AfiI	CCNNNNNNNGG	4 cut(s)	80, 198, 403, 1036
AgeI	ACCGGT	1 cut(s)	170
AgsI	TTSAA	6 cut(s)	158, 329, 419, 709, 773, 893
AjnI	CCWGG	1 cut(s)	490
AluBI	AGCT	9 cut(s)	332, 457, 597, 721, 839, 848, 1042, 1068, 1120
AluI	AGCT	9 cut(s)	332, 457, 597, 721, 839, 848, 1042, 1068, 1120
Alw21I	GWGCWC	2 cut(s)	343, 459
Alw26I	GTCTC	2 cut(s)	213, 977
Alw44I	GTGCAC	1 cut(s)	339
AlwI	GGATC	1 cut(s)	482
AoxI	GGCC	1 cut(s)	246
ApaLI	GTGCAC	1 cut(s)	339
ApeKI	GCWGC	4 cut(s)	392, 545, 956, 1042
ApoI	RAATTY	3 cut(s)	202, 347, 536
AsiGI	ACCGGT	1 cut(s)	170
AspS9I	GGNCC	3 cut(s)	247, 308, 1129
AsuHPI	GGTGA	3 cut(s)	185, 506, 802
AvaII	GGWCC	2 cut(s)	308, 1129
AxyI	CCTNAGG	1 cut(s)	267
BaeGI	GKGCMC	1 cut(s)	343
BanII	GRGCYC	1 cut(s)	459
BarI	GAAGNNNNNNTAC	2 cut(s)	612, 644
Bbv12I	GWGCWC	2 cut(s)	343, 459
BbvI	GCAGC	4 cut(s)	379, 532, 968, 1029
BccI	CCATC	2 cut(s)	671, 893
BceAI	ACGGC	1 cut(s)	363
BcgI	CGANNNNNNTGC	2 cut(s)	1183, 1217
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	1216
BcoDI	GTCTC	2 cut(s)	213, 977
BfaI	CTAG	2 cut(s)	980, 1133
BfmI	CTRYAG	1 cut(s)	546
BfuI	GTATCC	1 cut(s)	1216
BisI	GCNGC	4 cut(s)	393, 546, 957, 1043
BlpI	GCTNAGC	1 cut(s)	844
BlsI	GCNGC	4 cut(s)	394, 547, 958, 1044
Bme1390I	CCNGG	1 cut(s)	492
Bme18I	GGWCC	2 cut(s)	308, 1129
BmgT120I	GGNCC	3 cut(s)	247, 308, 1129
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	5 cut(s)	69, 277, 532, 771, 1099
BmuI	ACTGGG	1 cut(s)	69
BoxI	GACNNNNGTC	1 cut(s)	1249
Bpu1102I	GCTNAGC	1 cut(s)	844
BpuEI	CTTGAG	1 cut(s)	737
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	2 cut(s)	170, 316
Bsc4I	CCNNNNNNNGG	4 cut(s)	80, 198, 403, 1036
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	2 cut(s)	75, 735
Bse21I	CCTNAGG	1 cut(s)	267
Bse3DI	GCAATG	1 cut(s)	959
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	5 cut(s)	457, 607, 748, 786, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	80, 198, 403, 1036
BseMI	GCAATG	1 cut(s)	959
BseMII	CTCAG	2 cut(s)	258, 1255
BseNI	ACTGG	2 cut(s)	75, 735
BseSI	GKGCMC	1 cut(s)	343
BseXI	GCAGC	4 cut(s)	379, 532, 968, 1029
BsgI	GTGCAG	2 cut(s)	155, 975
Bsh1236I	CGCG	1 cut(s)	858
BshFI	GGCC	1 cut(s)	248
BshTI	ACCGGT	1 cut(s)	170
BsiHKAI	GWGCWC	2 cut(s)	343, 459
BsiSI	CCGG	2 cut(s)	171, 317
BslI	CCNNNNNNNGG	4 cut(s)	80, 198, 403, 1036
BsmAI	GTCTC	2 cut(s)	213, 977
BsnI	GGCC	1 cut(s)	248
Bsp1286I	GDGCHC	2 cut(s)	343, 459
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	1 cut(s)	487
Bsp1720I	GCTNAGC	1 cut(s)	844
BspACI	CCGC	2 cut(s)	449, 856
BspANI	GGCC	1 cut(s)	248
BspCNI	CTCAG	2 cut(s)	259, 1254
BspFNI	CGCG	1 cut(s)	858
BspMAI	CTGCAG	1 cut(s)	550
BspPI	GGATC	1 cut(s)	482
BsrDI	GCAATG	1 cut(s)	959
BsrFI	RCCGGY	1 cut(s)	170
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	2 cut(s)	75, 735
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	1 cut(s)	487
BssT1I	CCWWGG	1 cut(s)	578
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	106, 988
BstAUI	TGTACA	1 cut(s)	628
BstBAI	YACGTR	1 cut(s)	389
BstC8I	GCNNGC	1 cut(s)	841
BstDEI	CTNAG	4 cut(s)	267, 844, 1113, 1241
BstENI	CCTNNNNNAGG	2 cut(s)	401, 1034
BstF5I	GGATG	5 cut(s)	457, 607, 748, 786, 1114
BstFNI	CGCG	1 cut(s)	858
BstKTI	GATC	1 cut(s)	490
BstMAI	GTCTC	2 cut(s)	213, 977
BstMBI	GATC	1 cut(s)	487
BstMWI	GCNNNNNNNGC	6 cut(s)	66, 338, 398, 845, 956, 1245
BstNI	CCWGG	1 cut(s)	492
BstPAI	GACNNNNGTC	1 cut(s)	1249
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	546
BstSLI	GKGCMC	1 cut(s)	343
BstUI	CGCG	1 cut(s)	858
BstV1I	GCAGC	4 cut(s)	379, 532, 968, 1029
Bsu36I	CCTNAGG	1 cut(s)	267
BsuI	GTATCC	1 cut(s)	1216
BsuRI	GGCC	1 cut(s)	248
BtsCI	GGATG	5 cut(s)	457, 607, 748, 786, 1114
BtsI	GCAGTG	1 cut(s)	791
BtsIMutI	CAGTG	3 cut(s)	341, 697, 791
Cac8I	GCNNGC	1 cut(s)	841
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	247, 308, 1129
CseI	GACGC	1 cut(s)	1004
Csp6I	GTAC	3 cut(s)	629, 728, 815
CspAI	ACCGGT	1 cut(s)	170
CviAII	CATG	1 cut(s)	800
CviQI	GTAC	3 cut(s)	629, 728, 815
DdeI	CTNAG	4 cut(s)	267, 844, 1113, 1241
DpnI	GATC	1 cut(s)	489
DpnII	GATC	1 cut(s)	487
Ecl136II	GAGCTC	1 cut(s)	457
Eco130I	CCWWGG	1 cut(s)	578
Eco24I	GRGCYC	1 cut(s)	459
Eco47I	GGWCC	2 cut(s)	308, 1129
Eco53kI	GAGCTC	1 cut(s)	457
Eco57I	CTGAAG	3 cut(s)	108, 960, 1142
Eco81I	CCTNAGG	1 cut(s)	267
EcoICRI	GAGCTC	1 cut(s)	457
EcoNI	CCTNNNNNAGG	2 cut(s)	401, 1034
EcoO109I	RGGNCCY	1 cut(s)	1129
EcoRII	CCWGG	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	578
EcoT22I	ATGCAT	1 cut(s)	650
EcoT38I	GRGCYC	1 cut(s)	459
ErhI	CCWWGG	1 cut(s)	578
FaeI	CATG	1 cut(s)	803
FatI	CATG	1 cut(s)	799
Fnu4HI	GCNGC	4 cut(s)	393, 546, 957, 1043
FokI	GGATG	5 cut(s)	464, 614, 755, 793, 1121
FriOI	GRGCYC	1 cut(s)	459
Fsp4HI	GCNGC	4 cut(s)	393, 546, 957, 1043
FspBI	CTAG	2 cut(s)	980, 1133
GluI	GCNGC	4 cut(s)	393, 546, 957, 1043
HaeIII	GGCC	1 cut(s)	248
HapII	CCGG	2 cut(s)	171, 317
HgaI	GACGC	1 cut(s)	1004
Hin1II	CATG	1 cut(s)	803
HincII	GTYRAC	1 cut(s)	508
HindII	GTYRAC	1 cut(s)	508
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	9 cut(s)	176, 407, 419, 700, 773, 805, 852, 967, 1153
HpaII	CCGG	2 cut(s)	171, 317
HphI	GGTGA	3 cut(s)	185, 506, 802
Hpy166II	GTNNAC	3 cut(s)	341, 508, 525
Hpy188I	TCNGA	5 cut(s)	424, 589, 619, 822, 1244
Hpy188III	TCNNGA	7 cut(s)	365, 674, 706, 765, 980, 1101, 1204
Hpy8I	GTNNAC	3 cut(s)	341, 508, 525
Hpy99I	CGWCG	1 cut(s)	384
HpyAV	CCTTC	4 cut(s)	83, 252, 1040, 1117
HpyCH4III	ACNGT	2 cut(s)	106, 988
HpyCH4IV	ACGT	2 cut(s)	388, 521
HpyCH4V	TGCA	9 cut(s)	136, 290, 341, 401, 548, 648, 784, 956, 964
HpyF10VI	GCNNNNNNNGC	6 cut(s)	66, 338, 398, 845, 956, 1245
HpyF3I	CTNAG	4 cut(s)	267, 844, 1113, 1241
HpySE526I	ACGT	2 cut(s)	388, 521
Hsp92II	CATG	1 cut(s)	803
Kzo9I	GATC	1 cut(s)	487
LmnI	GCTCC	2 cut(s)	869, 1039
Lsp1109I	GCAGC	4 cut(s)	379, 532, 968, 1029
LweI	GCATC	5 cut(s)	69, 277, 532, 771, 1099
MaeI	CTAG	2 cut(s)	980, 1133
MaeII	ACGT	2 cut(s)	388, 521
MaeIII	GTNAC	7 cut(s)	173, 384, 494, 692, 931, 1093, 1157
MalI	GATC	1 cut(s)	489
MboI	GATC	1 cut(s)	487
MhlI	GDGCHC	2 cut(s)	343, 459
MluCI	AATT	6 cut(s)	202, 281, 347, 536, 810, 1075
MlyI	GAGTC	2 cut(s)	170, 846
MmeI	TCCRAC	2 cut(s)	542, 567
Mph1103I	ATGCAT	1 cut(s)	650
MseI	TTAA	2 cut(s)	570, 1255
MslI	CAYNNNNRTG	1 cut(s)	572
MspI	CCGG	2 cut(s)	171, 317
MspR9I	CCNGG	1 cut(s)	492
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	858
MwoI	GCNNNNNNNGC	6 cut(s)	66, 338, 398, 845, 956, 1245
NdeII	GATC	1 cut(s)	487
NlaIII	CATG	1 cut(s)	803
NmuCI	GTSAC	4 cut(s)	173, 494, 692, 1157
NsiI	ATGCAT	1 cut(s)	650
PfeI	GAWTC	7 cut(s)	407, 419, 700, 773, 805, 967, 1153
PinAI	ACCGGT	1 cut(s)	170
PkrI	GCNGC	4 cut(s)	394, 547, 958, 1044
PleI	GAGTC	2 cut(s)	170, 846
PpsI	GAGTC	2 cut(s)	170, 846
Ppu21I	YACGTR	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	1129
PshAI	GACNNNNGTC	1 cut(s)	1249
Psp124BI	GAGCTC	1 cut(s)	459
Psp1406I	AACGTT	1 cut(s)	521
Psp5II	RGGWCCY	1 cut(s)	1129
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspPI	GGNCC	3 cut(s)	247, 308, 1129
PspPPI	RGGWCCY	1 cut(s)	1129
PstI	CTGCAG	1 cut(s)	550
RsaI	GTAC	3 cut(s)	630, 729, 816
RsaNI	GTAC	3 cut(s)	629, 728, 815
RseI	CAYNNNNRTG	1 cut(s)	572
SacI	GAGCTC	1 cut(s)	459
SaqAI	TTAA	2 cut(s)	570, 1255
SatI	GCNGC	4 cut(s)	393, 546, 957, 1043
Sau3AI	GATC	1 cut(s)	487
Sau96I	GGNCC	3 cut(s)	247, 308, 1129
SchI	GAGTC	2 cut(s)	170, 846
ScrFI	CCNGG	1 cut(s)	492
SduI	GDGCHC	2 cut(s)	343, 459
SfaNI	GCATC	5 cut(s)	69, 277, 532, 771, 1099
SfcI	CTRYAG	1 cut(s)	546
SinI	GGWCC	2 cut(s)	308, 1129
SmiMI	CAYNNNNRTG	1 cut(s)	572
SmlI	CTYRAG	1 cut(s)	716
SmoI	CTYRAG	1 cut(s)	716
Sse9I	AATT	6 cut(s)	202, 281, 347, 536, 810, 1075
SsiI	CCGC	2 cut(s)	449, 856
SspMI	CTAG	2 cut(s)	980, 1133
SstI	GAGCTC	1 cut(s)	459
StyD4I	CCNGG	1 cut(s)	490
StyI	CCWWGG	1 cut(s)	578
TaaI	ACNGT	2 cut(s)	106, 988
TaiI	ACGT	2 cut(s)	391, 524
TaqI	TCGA	1 cut(s)	187
TasI	AATT	6 cut(s)	202, 281, 347, 536, 810, 1075
TatI	WGTACW	3 cut(s)	628, 727, 814
TfiI	GAWTC	7 cut(s)	407, 419, 700, 773, 805, 967, 1153
Tru1I	TTAA	2 cut(s)	570, 1255
Tru9I	TTAA	2 cut(s)	570, 1255
TscAI	CASTG	3 cut(s)	348, 697, 791
TseFI	GTSAC	4 cut(s)	173, 494, 692, 1157
TseI	GCWGC	4 cut(s)	392, 545, 956, 1042
Tsp45I	GTSAC	4 cut(s)	173, 494, 692, 1157
TspDTI	ATGAA	4 cut(s)	172, 309, 549, 759
TspGWI	ACGGA	2 cut(s)	793, 1235
TspRI	CASTG	3 cut(s)	348, 697, 791
VneI	GTGCAC	1 cut(s)	339
VpaK11BI	GGWCC	2 cut(s)	308, 1129
XagI	CCTNNNNNAGG	2 cut(s)	401, 1034
XapI	RAATTY	3 cut(s)	202, 347, 536
XbaI	TCTAGA	1 cut(s)	979
XspI	CTAG	2 cut(s)	980, 1133
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.