Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

3042570 .. 3049131

Gene Structure 6562 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g02740.t5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTGTGGTTAATCTTTCCCACGCATCCTCACTGTCCTTGATTAATCCCATAAGACCCAGTTGTCAAAGGAATAGACCCAATACCTCTATTATAGCCATGTCAGCAATCCCTGTGCAGCAGCAGCAGCACCCAGAAGTCAATGACGGTCAACAGCGCTTAACGGGCGACTCTTTCATTCGACCCCATTTGAGGACCTTGTCTCCTTATCAGCCCATTTTGCCATTTGAGGTGTTGTCAGCCCGACTTGGAAGGAAGCCGGAAGACATCATCAAATTAGATGCAAATGAAAACCCTTATGGTCCTCCTCCCGAGGTCTCTGAAGCTTTGGGTGCAATGAAATTCCCATATATTTATCCAGATCCTGAAAGCCGTCGCTTACGTGCTGCCCTTGCAGAGGATTCAGGCCTTGATGCTGAATATCTTCTTGTAGGATGTGGTGCAGATGAACTCATTGATTTGATCATGAGATGTGTGCTTGATCCTGGTGACAAGATTGTGGACTGCCCTCCAACGTTCACAATGTATGAATTTGATGCCGCAGTCAATGGGGCATCTGTCATTAAAGTGCCGAGGAAATCAAACTTTAGCTTGAATGTAGAGGCCATCTCAGATGTAGTTAAACAAGAAAAACCTAAATGCATATTCCTAACTTCTCCGAACAATCCAGATGGAAGCATAATCAGCGACGACATTCTCTTGAAAATCCTTGAGCTTCCTATATTGGTTGTTCTTGATGAAGCATACATTGAGTTTTCTGGACTTGAATCAAGGATGCAATGGGTGAAGAAATATGAGAATTTAATTGTTCTTCGAACATTTAGCAAACGAGCTGGCTTAGCCGGGCTTCGGGTAGGATATGGAGCATTTCCCTTGACAATAATTGAATATCTCTGGAGAGCAAAGCAACCATATAATGTGTCAGTTGCTGCTGAAGTTTCTGCTTGTGCAGCATTGCAGAATCCCACCTACCTTGAGAATGTGAAAGATGCTTTACTGCAAGAAAGGGAGAGGCTGCTTCATCTTCTTAAGGAGCTGCCATTTCTCAAGCCTTATCCTAGCTATTCCAATTTCATTCTGTGTGAGGTCACATCCGGAATGGATGCTAAGAAACTCAAGGAGGACCTTGCAAAAATGGGTGTGATGATTCGTCATTACAACAACAAAGAGTTGAGCGGTTATGTTCGTGTATCTGTTGGAAAGCCTGAACACACAGATGCCTTGATTGATTGCCTCAGACGCTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

417

Amino Acids

46.45

Weight (kDa)

5.98

Isoelectric Point (pI)

42.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	89 - 328	5.3e-45	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	63
AccBSI	CCGCTC	1 cut(s)	1176
AccIII	TCCGGA	1 cut(s)	1094
AciI	CCGC	2 cut(s)	540, 1176
AclI	AACGTT	1 cut(s)	515
AclWI	GGATC	2 cut(s)	356, 476
AcsI	RAATTY	3 cut(s)	341, 530, 799
AcuI	CTGAAG	2 cut(s)	342, 954
AfeI	AGCGCT	1 cut(s)	158
AfiI	CCNNNNNNNGG	3 cut(s)	192, 397, 849
AflII	CTTAAG	1 cut(s)	1028
AgsI	TTSAA	4 cut(s)	595, 703, 767, 887
AjnI	CCWGG	1 cut(s)	484
AluBI	AGCT	6 cut(s)	326, 591, 715, 833, 1036, 1062
AluI	AGCT	6 cut(s)	326, 591, 715, 833, 1036, 1062
Alw26I	GTCTC	2 cut(s)	207, 322
AlwI	GGATC	2 cut(s)	356, 476
AlwNI	CAGNNNCTG	2 cut(s)	365, 929
Ama87I	CYCGRG	1 cut(s)	311
Aor13HI	TCCGGA	1 cut(s)	1094
Aor51HI	AGCGCT	1 cut(s)	158
AoxI	GGCC	2 cut(s)	406, 603
ApeKI	GCWGC	9 cut(s)	118, 121, 124, 127, 386, 929, 950, 1015, 1036
ApoI	RAATTY	3 cut(s)	341, 530, 799
AseI	ATTAAT	1 cut(s)	45
Asp700I	GAANNNNTTC	1 cut(s)	423
AspLEI	GCGC	1 cut(s)	159
AspS9I	GGNCC	3 cut(s)	195, 302, 1123
AsuC2I	CCSGG	1 cut(s)	844
AsuHPI	GGTGA	2 cut(s)	500, 796
AsuII	TTCGAA	1 cut(s)	814
AvaI	CYCGRG	1 cut(s)	311
AvaII	GGWCC	3 cut(s)	195, 302, 1123
BbsI	GAAGAC	1 cut(s)	270
BbvI	GCAGC	9 cut(s)	130, 133, 136, 139, 373, 916, 962, 1002, 1023
BccI	CCATC	2 cut(s)	614, 665
BceAI	ACGGC	1 cut(s)	357
BciT130I	CCWGG	1 cut(s)	486
BclI	TGATCA	1 cut(s)	462
BcnI	CCSGG	1 cut(s)	844
BcoDI	GTCTC	2 cut(s)	207, 322
BfaI	CTAG	1 cut(s)	1059
BfoI	RGCGCY	1 cut(s)	160
BfrI	CTTAAG	1 cut(s)	1028
BlpI	GCTNAGC	1 cut(s)	838
Bme1390I	CCNGG	2 cut(s)	486, 844
Bme18I	GGWCC	3 cut(s)	195, 302, 1123
BmeT110I	CYCGRG	1 cut(s)	311
BmgT120I	GGNCC	3 cut(s)	195, 302, 1123
BmrFI	CCNGG	2 cut(s)	486, 844
BmrI	ACTGGG	1 cut(s)	54
BmsI	GCATC	9 cut(s)	35, 271, 403, 526, 563, 765, 979, 1093, 1207
BmuI	ACTGGG	1 cut(s)	54
BpiI	GAAGAC	1 cut(s)	270
BplI	GAGNNNNNCTC	2 cut(s)	593, 625
BpmI	CTGGAG	1 cut(s)	916
Bpu1102I	GCTNAGC	1 cut(s)	838
Bpu14I	TTCGAA	1 cut(s)	814
BpuEI	CTTGAG	4 cut(s)	731, 995, 1031, 1100
BpuMI	CCSGG	1 cut(s)	844
BsaAI	YACGTR	1 cut(s)	383
BsaI	GGTCTC	1 cut(s)	322
BsaJI	CCNNGG	2 cut(s)	312, 572
BsaWI	WCCGGW	1 cut(s)	1094
BsaXI	ACNNNNNCTCC	2 cut(s)	187, 217
Bsc4I	CCNNNNNNNGG	3 cut(s)	192, 397, 849
Bse1I	ACTGG	1 cut(s)	60
Bse3DI	GCAATG	3 cut(s)	342, 785, 953
BseAI	TCCGGA	1 cut(s)	1094
BseBI	CCWGG	1 cut(s)	486
BseDI	CCNNGG	2 cut(s)	312, 572
BseGI	GGATG	5 cut(s)	26, 440, 780, 1091, 1108
BseLI	CCNNNNNNNGG	3 cut(s)	192, 397, 849
BseMI	GCAATG	3 cut(s)	342, 785, 953
BseMII	CTCAG	2 cut(s)	624, 1249
BseNI	ACTGG	1 cut(s)	60
BseRI	GAGGAG	1 cut(s)	297
BseXI	GCAGC	9 cut(s)	130, 133, 136, 139, 373, 916, 962, 1002, 1023
BsgI	GTGCAG	3 cut(s)	137, 462, 969
BshFI	GGCC	2 cut(s)	408, 605
BsiHKCI	CYCGRG	1 cut(s)	311
BsiSI	CCGG	3 cut(s)	260, 843, 1095
BslI	CCNNNNNNNGG	3 cut(s)	192, 397, 849
BsmAI	GTCTC	2 cut(s)	207, 322
BsnI	GGCC	2 cut(s)	408, 605
Bso31I	GGTCTC	1 cut(s)	322
BsoBI	CYCGRG	1 cut(s)	311
Bsp119I	TTCGAA	1 cut(s)	814
Bsp13I	TCCGGA	1 cut(s)	1094
Bsp143I	GATC	3 cut(s)	361, 462, 481
Bsp1720I	GCTNAGC	1 cut(s)	838
BspACI	CCGC	2 cut(s)	540, 1176
BspANI	GGCC	2 cut(s)	408, 605
BspCNI	CTCAG	2 cut(s)	623, 1248
BspEI	TCCGGA	1 cut(s)	1094
BspHI	TCATGA	1 cut(s)	465
BspPI	GGATC	2 cut(s)	356, 476
BspT104I	TTCGAA	1 cut(s)	814
BspTI	CTTAAG	1 cut(s)	1028
BspTNI	GGTCTC	1 cut(s)	322
BsrBI	CCGCTC	1 cut(s)	1176
BsrDI	GCAATG	3 cut(s)	342, 785, 953
BsrI	ACTGG	1 cut(s)	60
BssECI	CCNNGG	2 cut(s)	312, 572
BssMI	GATC	3 cut(s)	361, 462, 481
Bst2UI	CCWGG	1 cut(s)	486
Bst4CI	ACNGT	2 cut(s)	36, 149
BstAFI	CTTAAG	1 cut(s)	1028
BstBAI	YACGTR	1 cut(s)	383
BstBI	TTCGAA	1 cut(s)	814
BstC8I	GCNNGC	1 cut(s)	835
BstDEI	CTNAG	4 cut(s)	610, 838, 1107, 1235
BstENI	CCTNNNNNAGG	1 cut(s)	395
BstF5I	GGATG	5 cut(s)	26, 440, 780, 1091, 1108
BstH2I	RGCGCY	1 cut(s)	160
BstHHI	GCGC	1 cut(s)	159
BstKTI	GATC	3 cut(s)	364, 465, 484
BstMAI	GTCTC	2 cut(s)	207, 322
BstMBI	GATC	3 cut(s)	361, 462, 481
BstNI	CCWGG	1 cut(s)	486
BstSCI	CCNGG	2 cut(s)	484, 842
BstV1I	GCAGC	9 cut(s)	130, 133, 136, 139, 373, 916, 962, 1002, 1023
BstV2I	GAAGAC	1 cut(s)	270
BstX2I	RGATCY	1 cut(s)	361
BstYI	RGATCY	1 cut(s)	361
BsuRI	GGCC	2 cut(s)	408, 605
BtsCI	GGATG	5 cut(s)	26, 440, 780, 1091, 1108
BtsIMutI	CAGTG	1 cut(s)	32
Cac8I	GCNNGC	1 cut(s)	835
CaiI	CAGNNNCTG	2 cut(s)	365, 929
CciI	TCATGA	1 cut(s)	465
CfoI	GCGC	1 cut(s)	159
Cfr13I	GGNCC	3 cut(s)	195, 302, 1123
CspCI	CAANNNNNGTGG	2 cut(s)	955, 990
CviAII	CATG	2 cut(s)	100, 466
DdeI	CTNAG	4 cut(s)	610, 838, 1107, 1235
DpnI	GATC	3 cut(s)	363, 464, 483
DpnII	GATC	3 cut(s)	361, 462, 481
DrdI	GACNNNNNNGTC	1 cut(s)	63
DseDI	GACNNNNNNGTC	1 cut(s)	63
Eco147I	AGGCCT	1 cut(s)	408
Eco31I	GGTCTC	1 cut(s)	322
Eco47I	GGWCC	3 cut(s)	195, 302, 1123
Eco47III	AGCGCT	1 cut(s)	158
Eco57I	CTGAAG	2 cut(s)	342, 954
Eco88I	CYCGRG	1 cut(s)	311
EcoNI	CCTNNNNNAGG	1 cut(s)	395
EcoO109I	RGGNCCY	2 cut(s)	195, 1123
EcoRII	CCWGG	1 cut(s)	484
EcoT22I	ATGCAT	1 cut(s)	644
FaeI	CATG	2 cut(s)	103, 469
FatI	CATG	2 cut(s)	99, 465
FbaI	TGATCA	1 cut(s)	462
FokI	GGATG	5 cut(s)	13, 447, 787, 1078, 1115
FspBI	CTAG	1 cut(s)	1059
GlaI	GCGC	1 cut(s)	158
GsuI	CTGGAG	1 cut(s)	916
HaeII	RGCGCY	1 cut(s)	160
HaeIII	GGCC	2 cut(s)	408, 605
HapII	CCGG	3 cut(s)	260, 843, 1095
HhaI	GCGC	1 cut(s)	159
Hin1II	CATG	2 cut(s)	103, 469
Hin6I	GCGC	1 cut(s)	157
HinP1I	GCGC	1 cut(s)	157
HincII	GTYRAC	1 cut(s)	152
HindII	GTYRAC	1 cut(s)	152
HindIII	AAGCTT	1 cut(s)	324
HinfI	GANTC	5 cut(s)	170, 401, 767, 961, 1147
HpaII	CCGG	3 cut(s)	260, 843, 1095
HphI	GGTGA	2 cut(s)	500, 796
Hpy166II	GTNNAC	3 cut(s)	152, 502, 519
Hpy188I	TCNGA	4 cut(s)	322, 613, 660, 1238
Hpy8I	GTNNAC	3 cut(s)	152, 502, 519
Hpy99I	CGWCG	2 cut(s)	378, 692
HpyAV	CCTTC	1 cut(s)	246
HpyCH4III	ACNGT	2 cut(s)	36, 149
HpyCH4IV	ACGT	2 cut(s)	382, 515
HpyF3I	CTNAG	4 cut(s)	610, 838, 1107, 1235
HpySE526I	ACGT	2 cut(s)	382, 515
Hsp92II	CATG	2 cut(s)	103, 469
HspAI	GCGC	1 cut(s)	157
Kpn2I	TCCGGA	1 cut(s)	1094
Ksp22I	TGATCA	1 cut(s)	462
Kzo9I	GATC	3 cut(s)	361, 462, 481
LmnI	GCTCC	2 cut(s)	863, 1033
Lsp1109I	GCAGC	9 cut(s)	130, 133, 136, 139, 373, 916, 962, 1002, 1023
LweI	GCATC	9 cut(s)	35, 271, 403, 526, 563, 765, 979, 1093, 1207
MaeI	CTAG	1 cut(s)	1059
MaeII	ACGT	2 cut(s)	382, 515
MaeIII	GTNAC	2 cut(s)	488, 1087
MalI	GATC	3 cut(s)	363, 464, 483
MbiI	CCGCTC	1 cut(s)	1176
MboI	GATC	3 cut(s)	361, 462, 481
MboII	GAAGA	5 cut(s)	275, 416, 799, 803, 1016
MflI	RGATCY	1 cut(s)	361
MluCI	AATT	7 cut(s)	275, 341, 530, 799, 804, 882, 1069
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	536, 1177
Mph1103I	ATGCAT	1 cut(s)	644
MroI	TCCGGA	1 cut(s)	1094
MroXI	GAANNNNTTC	1 cut(s)	423
MseI	TTAA	8 cut(s)	12, 45, 161, 564, 621, 803, 1029, 1249
MslI	CAYNNNNRTG	2 cut(s)	566, 1215
MspCI	CTTAAG	1 cut(s)	1028
MspI	CCGG	3 cut(s)	260, 843, 1095
MspR9I	CCNGG	2 cut(s)	486, 844
MvaI	CCWGG	1 cut(s)	486
NciI	CCSGG	1 cut(s)	844
NdeII	GATC	3 cut(s)	361, 462, 481
NlaIII	CATG	2 cut(s)	103, 469
NmeAIII	GCCGAG	1 cut(s)	597
NmuCI	GTSAC	2 cut(s)	488, 1087
NsiI	ATGCAT	1 cut(s)	644
NspV	TTCGAA	1 cut(s)	814
PagI	TCATGA	1 cut(s)	465
PceI	AGGCCT	1 cut(s)	408
PdmI	GAANNNNTTC	1 cut(s)	423
PfeI	GAWTC	4 cut(s)	401, 767, 961, 1147
PflFI	GACNNNGTC	1 cut(s)	199
PleI	GAGTC	1 cut(s)	164
PpsI	GAGTC	1 cut(s)	164
Ppu21I	YACGTR	1 cut(s)	383
PpuMI	RGGWCCY	2 cut(s)	195, 1123
PshBI	ATTAAT	1 cut(s)	45
Psp1406I	AACGTT	1 cut(s)	515
Psp5II	RGGWCCY	2 cut(s)	195, 1123
Psp6I	CCWGG	1 cut(s)	484
PspGI	CCWGG	1 cut(s)	484
PspPI	GGNCC	3 cut(s)	195, 302, 1123
PspPPI	RGGWCCY	2 cut(s)	195, 1123
PstNI	CAGNNNCTG	2 cut(s)	365, 929
PsuI	RGATCY	1 cut(s)	361
PsyI	GACNNNGTC	1 cut(s)	199
RseI	CAYNNNNRTG	2 cut(s)	566, 1215
SaqAI	TTAA	8 cut(s)	12, 45, 161, 564, 621, 803, 1029, 1249
Sau3AI	GATC	3 cut(s)	361, 462, 481
Sau96I	GGNCC	3 cut(s)	195, 302, 1123
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	2 cut(s)	486, 844
SfaNI	GCATC	9 cut(s)	35, 271, 403, 526, 563, 765, 979, 1093, 1207
SfuI	TTCGAA	1 cut(s)	814
SinI	GGWCC	3 cut(s)	195, 302, 1123
SmiMI	CAYNNNNRTG	2 cut(s)	566, 1215
SmlI	CTYRAG	5 cut(s)	710, 974, 1028, 1046, 1115
SmoI	CTYRAG	5 cut(s)	710, 974, 1028, 1046, 1115
Sse9I	AATT	7 cut(s)	275, 341, 530, 799, 804, 882, 1069
SseBI	AGGCCT	1 cut(s)	408
SsiI	CCGC	2 cut(s)	540, 1176
SspMI	CTAG	1 cut(s)	1059
StuI	AGGCCT	1 cut(s)	408
StyD4I	CCNGG	2 cut(s)	484, 842
TaaI	ACNGT	2 cut(s)	36, 149
TaiI	ACGT	2 cut(s)	385, 518
TaqI	TCGA	2 cut(s)	181, 814
TasI	AATT	7 cut(s)	275, 341, 530, 799, 804, 882, 1069
TauI	GCSGC	1 cut(s)	542
TfiI	GAWTC	4 cut(s)	401, 767, 961, 1147
Tru1I	TTAA	8 cut(s)	12, 45, 161, 564, 621, 803, 1029, 1249
Tru9I	TTAA	8 cut(s)	12, 45, 161, 564, 621, 803, 1029, 1249
TscAI	CASTG	1 cut(s)	39
TseFI	GTSAC	2 cut(s)	488, 1087
TseI	GCWGC	9 cut(s)	118, 121, 124, 127, 386, 929, 950, 1015, 1036
Tsp45I	GTSAC	2 cut(s)	488, 1087
TspDTI	ATGAA	8 cut(s)	166, 303, 353, 462, 543, 753, 1010, 1063
TspRI	CASTG	1 cut(s)	39
Tth111I	GACNNNGTC	1 cut(s)	199
Vha464I	CTTAAG	1 cut(s)	1028
VpaK11BI	GGWCC	3 cut(s)	195, 302, 1123
VspI	ATTAAT	1 cut(s)	45
XagI	CCTNNNNNAGG	1 cut(s)	395
XapI	RAATTY	3 cut(s)	341, 530, 799
XmnI	GAANNNNTTC	1 cut(s)	423
XspI	CTAG	1 cut(s)	1059
Zsp2I	ATGCAT	1 cut(s)	644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.