Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Forward (+)

60032277 .. 60038887

Gene Structure 6611 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00327360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1257 bp

ATGGGTGTGATTAATCTCTACCACGCTTCCTCACTTCACTTCACTAATCCCACTTCCTCAACACCCAGTTCTAAAAGGAATACTAGACCCACCTCTGTTATAGCCATGTCCACCATCCCTGTGCAGCAGCAGCAGCCGCCACTAGTCAATGACGGTCAACACCGCTTGACCGGCGACTCTTTCATTCGACCCCATTTGAGAACCTTGTCTCCTTATCAACCCATTTTGCCGTTTGAGGTGTTGTCAGCCCGACTTGGAAGGAAGCCTGAAGACATCATCAAATTAGATGCAAATGAAAACCCTTACGGTCCTCCTCCGGAGGTTTCTGAAGCTTTGGGTGCATTGCAATTCCCATATATTTATCCGGACCCTGAAAGCCGTCGCTTACGTGCTGCCCTTGCAAAGGATTCAGGCCTTGATGCTGAATATCTTCTTGCAGGATGTGGTGCAGATGAACTCATTGATTTGATCATGAGATGTGTGCTTGATCCTGGTGACAAGATTGTGGACTGCCCTCCCACGTTCACAATGTATGAATTTGATGCCGCAGTCAATGGGGCATCCGTAATTAAAGTGCCGAGGAAGTCAAACTTTAGCTTGAATGTAGAGGTCATCTCAGATGTAGTTAAACAAGAAAAACCTAAATGCATATTCCTAACTTCTCCAAACAATCCAGATGGGAGTATAATCAGCGACGACATTCTCTTGAAAATCCTTGAGCTTCCTATATTGGTTGTTCTGGATGAAGCATATATTGAGTTTTCTGGACTTGAATCAAGGATGCAATGGGTGAAGAAGCATGAGAATTTAATTGTTCTTCGAACATTTAGCAAACGAGCTGGCTTAGCCGGACTCCGGGTGGGATACGGAGCATTTCCCTTGACAATCATTGAATATCTCTGGAGAGCAAAGCAACCATATAATGTGTCCGTTGCTGCTGAAGTTTCTGCCTGTGCAGCATTGCAGAATCCCACCTACCTTGAGAACGTGAAAAATGCTTTACTGCAAGAAAGGGAGAGGCTGTATCACCTTCTCAAGGAGCTGCCATTTCTCAAGCCTTATCCTAGCTATTCCAATTTCATTCTTTGTGAGGTCACATCCGGAATGGATGCTAAGAAACTCAAGGAGGACCTTGCAAAAATGGGTGTGATGATTCGTCATTACAACAACAAAGAGTTGAGCGGTTATGTTCGCGTATCAGTTGGGAAGCCTGAACACACAGATGCCTTGATTGATTGCCTCAGACGGTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

418

Amino Acids

46.67

Weight (kDa)

6.72

Isoelectric Point (pI)

43.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	91 - 412	9.9e-54	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1182
AccII	CGCG	1 cut(s)	1194
AccIII	TCCGGA	3 cut(s)	316, 364, 1100
AciI	CCGC	4 cut(s)	137, 163, 546, 1182
AclWI	GGATC	1 cut(s)	482
AcsI	RAATTY	2 cut(s)	536, 805
AcuI	CTGAAG	3 cut(s)	288, 348, 960
AfiI	CCNNNNNNNGG	3 cut(s)	403, 855, 1036
AgsI	TTSAA	4 cut(s)	601, 709, 773, 893
AhlI	ACTAGT	1 cut(s)	142
AjnI	CCWGG	1 cut(s)	490
AloI	GAACNNNNNNTCC	2 cut(s)	193, 225
AluBI	AGCT	6 cut(s)	332, 597, 721, 839, 1042, 1068
AluI	AGCT	6 cut(s)	332, 597, 721, 839, 1042, 1068
Alw26I	GTCTC	1 cut(s)	213
AlwI	GGATC	1 cut(s)	482
Aor13HI	TCCGGA	3 cut(s)	316, 364, 1100
AoxI	GGCC	1 cut(s)	412
ApeKI	GCWGC	8 cut(s)	124, 127, 130, 133, 392, 935, 956, 1042
ApoI	RAATTY	2 cut(s)	536, 805
AseI	ATTAAT	1 cut(s)	12
Asp700I	GAANNNNTTC	1 cut(s)	429
AspS9I	GGNCC	3 cut(s)	308, 367, 1129
AsuC2I	CCSGG	1 cut(s)	857
AsuHPI	GGTGA	3 cut(s)	506, 802, 1019
AsuII	TTCGAA	1 cut(s)	820
AvaII	GGWCC	3 cut(s)	308, 367, 1129
BbsI	GAAGAC	1 cut(s)	276
BbvI	GCAGC	8 cut(s)	136, 139, 142, 145, 379, 922, 968, 1029
BccI	CCATC	2 cut(s)	122, 671
BceAI	ACGGC	2 cut(s)	214, 363
BciT130I	CCWGG	1 cut(s)	492
BciVI	GTATCC	1 cut(s)	857
BclI	TGATCA	1 cut(s)	468
BcnI	CCSGG	1 cut(s)	857
BcoDI	GTCTC	1 cut(s)	213
BcuI	ACTAGT	1 cut(s)	142
BfaI	CTAG	3 cut(s)	84, 143, 1065
BfuI	GTATCC	1 cut(s)	857
BlpI	GCTNAGC	1 cut(s)	844
Bme1390I	CCNGG	2 cut(s)	492, 857
Bme18I	GGWCC	3 cut(s)	308, 367, 1129
BmgT120I	GGNCC	3 cut(s)	308, 367, 1129
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	2 cut(s)	492, 857
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	7 cut(s)	277, 409, 532, 569, 771, 1099, 1213
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	276
BplI	GAGNNNNNCTC	2 cut(s)	599, 631
BpmI	CTGGAG	1 cut(s)	922
Bpu1102I	GCTNAGC	1 cut(s)	844
Bpu14I	TTCGAA	1 cut(s)	820
BpuEI	CTTGAG	5 cut(s)	737, 1001, 1019, 1037, 1106
BpuMI	CCSGG	1 cut(s)	857
BsaAI	YACGTR	1 cut(s)	389
BsaJI	CCNNGG	1 cut(s)	578
BsaWI	WCCGGW	3 cut(s)	316, 364, 1100
BsaXI	ACNNNNNCTCC	4 cut(s)	193, 223, 1007, 1037
Bsc4I	CCNNNNNNNGG	3 cut(s)	403, 855, 1036
Bse118I	RCCGGY	1 cut(s)	170
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	3 cut(s)	341, 791, 959
BseAI	TCCGGA	3 cut(s)	316, 364, 1100
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	578
BseGI	GGATG	7 cut(s)	114, 446, 560, 748, 786, 1097, 1114
BseLI	CCNNNNNNNGG	3 cut(s)	403, 855, 1036
BseMI	GCAATG	3 cut(s)	341, 791, 959
BseMII	CTCAG	2 cut(s)	630, 1255
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	303
BseXI	GCAGC	8 cut(s)	136, 139, 142, 145, 379, 922, 968, 1029
BsgI	GTGCAG	3 cut(s)	143, 468, 975
Bsh1236I	CGCG	1 cut(s)	1194
BshFI	GGCC	1 cut(s)	414
BsiSI	CCGG	6 cut(s)	171, 317, 365, 849, 856, 1101
BslI	CCNNNNNNNGG	3 cut(s)	403, 855, 1036
BsmAI	GTCTC	1 cut(s)	213
BsnI	GGCC	1 cut(s)	414
Bsp119I	TTCGAA	1 cut(s)	820
Bsp13I	TCCGGA	3 cut(s)	316, 364, 1100
Bsp143I	GATC	2 cut(s)	468, 487
Bsp1720I	GCTNAGC	1 cut(s)	844
BspACI	CCGC	4 cut(s)	137, 163, 546, 1182
BspANI	GGCC	1 cut(s)	414
BspCNI	CTCAG	2 cut(s)	629, 1254
BspEI	TCCGGA	3 cut(s)	316, 364, 1100
BspFNI	CGCG	1 cut(s)	1194
BspHI	TCATGA	1 cut(s)	471
BspLI	GGNNCC	1 cut(s)	369
BspPI	GGATC	1 cut(s)	482
BspT104I	TTCGAA	1 cut(s)	820
BsrBI	CCGCTC	1 cut(s)	1182
BsrDI	GCAATG	3 cut(s)	341, 791, 959
BsrFI	RCCGGY	1 cut(s)	170
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	1 cut(s)	170
BssECI	CCNNGG	1 cut(s)	578
BssMI	GATC	2 cut(s)	468, 487
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	3 cut(s)	155, 308, 1248
BstBAI	YACGTR	1 cut(s)	389
BstBI	TTCGAA	1 cut(s)	820
BstC8I	GCNNGC	1 cut(s)	841
BstDEI	CTNAG	4 cut(s)	616, 844, 1113, 1241
BstENI	CCTNNNNNAGG	2 cut(s)	401, 1034
BstF5I	GGATG	7 cut(s)	114, 446, 560, 748, 786, 1097, 1114
BstFNI	CGCG	1 cut(s)	1194
BstKTI	GATC	2 cut(s)	471, 490
BstMAI	GTCTC	1 cut(s)	213
BstMBI	GATC	2 cut(s)	468, 487
BstMWI	GCNNNNNNNGC	8 cut(s)	130, 133, 136, 171, 338, 398, 845, 956
BstNI	CCWGG	1 cut(s)	492
BstSCI	CCNGG	2 cut(s)	490, 855
BstUI	CGCG	1 cut(s)	1194
BstV1I	GCAGC	8 cut(s)	136, 139, 142, 145, 379, 922, 968, 1029
BstV2I	GAAGAC	1 cut(s)	276
BsuI	GTATCC	1 cut(s)	857
BsuRI	GGCC	1 cut(s)	414
BtsCI	GGATG	7 cut(s)	114, 446, 560, 748, 786, 1097, 1114
Cac8I	GCNNGC	1 cut(s)	841
CciI	TCATGA	1 cut(s)	471
Cfr10I	RCCGGY	1 cut(s)	170
Cfr13I	GGNCC	3 cut(s)	308, 367, 1129
CspCI	CAANNNNNGTGG	2 cut(s)	961, 996
CviAII	CATG	3 cut(s)	106, 472, 800
DdeI	CTNAG	4 cut(s)	616, 844, 1113, 1241
DpnI	GATC	2 cut(s)	470, 489
DpnII	GATC	2 cut(s)	468, 487
Eco147I	AGGCCT	1 cut(s)	414
Eco47I	GGWCC	3 cut(s)	308, 367, 1129
Eco57I	CTGAAG	3 cut(s)	288, 348, 960
EcoNI	CCTNNNNNAGG	2 cut(s)	401, 1034
EcoO109I	RGGNCCY	1 cut(s)	1129
EcoRII	CCWGG	1 cut(s)	490
EcoT22I	ATGCAT	1 cut(s)	650
FaeI	CATG	3 cut(s)	109, 475, 803
FalI	AAGNNNNNCTT	2 cut(s)	575, 607
FatI	CATG	3 cut(s)	105, 471, 799
FbaI	TGATCA	1 cut(s)	468
FokI	GGATG	7 cut(s)	101, 453, 547, 755, 793, 1084, 1121
FspBI	CTAG	3 cut(s)	84, 143, 1065
GsuI	CTGGAG	1 cut(s)	922
HaeIII	GGCC	1 cut(s)	414
HapII	CCGG	6 cut(s)	171, 317, 365, 849, 856, 1101
Hin1II	CATG	3 cut(s)	109, 475, 803
HincII	GTYRAC	1 cut(s)	158
HindII	GTYRAC	1 cut(s)	158
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	6 cut(s)	176, 407, 773, 852, 967, 1153
HpaII	CCGG	6 cut(s)	171, 317, 365, 849, 856, 1101
HphI	GGTGA	3 cut(s)	506, 802, 1019
Hpy166II	GTNNAC	4 cut(s)	111, 158, 508, 525
Hpy188I	TCNGA	3 cut(s)	328, 619, 1244
Hpy188III	TCNNGA	9 cut(s)	317, 365, 472, 674, 706, 740, 765, 901, 1101
Hpy8I	GTNNAC	4 cut(s)	111, 158, 508, 525
Hpy99I	CGWCG	2 cut(s)	384, 698
HpyAV	CCTTC	2 cut(s)	252, 1040
HpyCH4III	ACNGT	3 cut(s)	155, 308, 1248
HpyCH4IV	ACGT	3 cut(s)	388, 521, 987
HpyF10VI	GCNNNNNNNGC	8 cut(s)	130, 133, 136, 171, 338, 398, 845, 956
HpyF3I	CTNAG	4 cut(s)	616, 844, 1113, 1241
HpySE526I	ACGT	3 cut(s)	388, 521, 987
Hsp92II	CATG	3 cut(s)	109, 475, 803
Kpn2I	TCCGGA	3 cut(s)	316, 364, 1100
Ksp22I	TGATCA	1 cut(s)	468
Kzo9I	GATC	2 cut(s)	468, 487
LmnI	GCTCC	2 cut(s)	869, 1039
Lsp1109I	GCAGC	8 cut(s)	136, 139, 142, 145, 379, 922, 968, 1029
LweI	GCATC	7 cut(s)	277, 409, 532, 569, 771, 1099, 1213
MaeI	CTAG	3 cut(s)	84, 143, 1065
MaeII	ACGT	3 cut(s)	388, 521, 987
MaeIII	GTNAC	2 cut(s)	494, 1093
MalI	GATC	2 cut(s)	470, 489
MbiI	CCGCTC	1 cut(s)	1182
MboI	GATC	2 cut(s)	468, 487
MboII	GAAGA	4 cut(s)	281, 422, 805, 809
MluCI	AATT	7 cut(s)	281, 347, 536, 567, 805, 810, 1075
MlyI	GAGTC	2 cut(s)	170, 846
Mph1103I	ATGCAT	1 cut(s)	650
MroI	TCCGGA	3 cut(s)	316, 364, 1100
MroXI	GAANNNNTTC	1 cut(s)	429
MseI	TTAA	5 cut(s)	12, 570, 627, 809, 1255
MslI	CAYNNNNRTG	2 cut(s)	119, 1221
MspI	CCGG	6 cut(s)	171, 317, 365, 849, 856, 1101
MspR9I	CCNGG	2 cut(s)	492, 857
MvaI	CCWGG	1 cut(s)	492
MvnI	CGCG	1 cut(s)	1194
MwoI	GCNNNNNNNGC	8 cut(s)	130, 133, 136, 171, 338, 398, 845, 956
NciI	CCSGG	1 cut(s)	857
NdeII	GATC	2 cut(s)	468, 487
NlaIII	CATG	3 cut(s)	109, 475, 803
NlaIV	GGNNCC	1 cut(s)	369
NmeAIII	GCCGAG	1 cut(s)	603
NmuCI	GTSAC	2 cut(s)	494, 1093
NsiI	ATGCAT	1 cut(s)	650
NspV	TTCGAA	1 cut(s)	820
PagI	TCATGA	1 cut(s)	471
PceI	AGGCCT	1 cut(s)	414
PdmI	GAANNNNTTC	1 cut(s)	429
PfeI	GAWTC	4 cut(s)	407, 773, 967, 1153
PleI	GAGTC	2 cut(s)	170, 846
PpsI	GAGTC	2 cut(s)	170, 846
Ppu21I	YACGTR	1 cut(s)	389
PpuMI	RGGWCCY	1 cut(s)	1129
PshBI	ATTAAT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	1129
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	3 cut(s)	308, 367, 1129
PspPPI	RGGWCCY	1 cut(s)	1129
RseI	CAYNNNNRTG	2 cut(s)	119, 1221
SaqAI	TTAA	5 cut(s)	12, 570, 627, 809, 1255
Sau3AI	GATC	2 cut(s)	468, 487
Sau96I	GGNCC	3 cut(s)	308, 367, 1129
SchI	GAGTC	2 cut(s)	170, 846
ScrFI	CCNGG	2 cut(s)	492, 857
SfaNI	GCATC	7 cut(s)	277, 409, 532, 569, 771, 1099, 1213
SfuI	TTCGAA	1 cut(s)	820
SinI	GGWCC	3 cut(s)	308, 367, 1129
SmiMI	CAYNNNNRTG	2 cut(s)	119, 1221
SmlI	CTYRAG	5 cut(s)	716, 980, 1034, 1052, 1121
SmoI	CTYRAG	5 cut(s)	716, 980, 1034, 1052, 1121
SpeI	ACTAGT	1 cut(s)	142
Sse9I	AATT	7 cut(s)	281, 347, 536, 567, 805, 810, 1075
SseBI	AGGCCT	1 cut(s)	414
SsiI	CCGC	4 cut(s)	137, 163, 546, 1182
SspMI	CTAG	3 cut(s)	84, 143, 1065
StuI	AGGCCT	1 cut(s)	414
StyD4I	CCNGG	2 cut(s)	490, 855
TaaI	ACNGT	3 cut(s)	155, 308, 1248
TaiI	ACGT	3 cut(s)	391, 524, 990
TaqI	TCGA	2 cut(s)	187, 820
TasI	AATT	7 cut(s)	281, 347, 536, 567, 805, 810, 1075
TauI	GCSGC	2 cut(s)	139, 548
TfiI	GAWTC	4 cut(s)	407, 773, 967, 1153
Tru1I	TTAA	5 cut(s)	12, 570, 627, 809, 1255
Tru9I	TTAA	5 cut(s)	12, 570, 627, 809, 1255
TseFI	GTSAC	2 cut(s)	494, 1093
TseI	GCWGC	8 cut(s)	124, 127, 130, 133, 392, 935, 956, 1042
Tsp45I	GTSAC	2 cut(s)	494, 1093
TspDTI	ATGAA	6 cut(s)	172, 309, 468, 549, 759, 1069
TspGWI	ACGGA	3 cut(s)	553, 882, 919
VpaK11BI	GGWCC	3 cut(s)	308, 367, 1129
VspI	ATTAAT	1 cut(s)	12
XagI	CCTNNNNNAGG	2 cut(s)	401, 1034
XapI	RAATTY	2 cut(s)	536, 805
XmnI	GAANNNNTTC	1 cut(s)	429
XspI	CTAG	3 cut(s)	84, 143, 1065
Zsp2I	ATGCAT	1 cut(s)	650

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.