Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001168.1

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

16223 .. 21027

Gene Structure 4805 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001168.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgtccaccatccctgtgcagcagcagccgccactagtcaatgacggtcaacaccgcttgacgggcgactctttcattcgaccccatttgagaaccttgtctccttatcaacccattttgccgtttgaggtgttgtcaacccgacttggaaggaagcctgaagacatcatcaaattagatgcaaatgaaaacccttacggtcctcctccggaggtttctgaagctttgggtgcattgaaattcccatatatttatccggaccctgaaagccgtcgcttacgtgctgcacttgcaaaggattcaggccttgatgctgaatatcttcttgcaggatgtggtgcagatgaactcattgatttgatcatgagatgtgtgcttgatcctggtgacaagattgtggactgccctcccacgttcacaatgtatgaatttgatgctgcagtcaacggggcatccgtaattaaagtgccgaggaagtcaaactttagcttgaatgtagaggtcatctcagatgtagttaaacaagaaaaacctaaatgcatattcctaacttctccaaacaatccagatgggagtataatcagcgacgacattctcttgaaaatccttgagcttcctatattggttgttctggatgaagcatatattgagttttctggacttgaatcaaggatgcaatgggtgaagaagcatgagaatttaattgttcttcgaacatttagcaaacgagctggcttagccggactccgggtgggatacggagcatttcccttgacaatcattgaatatctctggagagcaaagcaaccatataatgtgtccgttgctgctgaagtttctgcctgtgcagcattgcagaatccctcctaccttgagaacgtgaaaaatgctttactgcaagaaagggacaggctttatcaccttctcaaggagctgccatttctcaagccttatcctagctattccaatttcattctttgtgaggtcacatccggaatggatgctaagaaactcaaggaggaccttgcaaaaatgggtgtgatgattcgtcattacaacaacaaagagttgagcggttatgttcgcgtatcagttgggaagcctgaacacacagatgccttgattgattgcctcagacgcttatcttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

382

Amino Acids

42.78

Weight (kDa)

6.14

Isoelectric Point (pI)

42.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1074
AccII	CGCG	1 cut(s)	1086
AccIII	TCCGGA	3 cut(s)	208, 256, 992
AciI	CCGC	3 cut(s)	29, 55, 1074
AclWI	GGATC	1 cut(s)	374
AcsI	RAATTY	3 cut(s)	239, 428, 697
AcuI	CTGAAG	3 cut(s)	180, 240, 852
AfiI	CCNNNNNNNGG	3 cut(s)	61, 747, 928
AgsI	TTSAA	5 cut(s)	238, 493, 601, 665, 785
AhlI	ACTAGT	1 cut(s)	34
AjnI	CCWGG	1 cut(s)	382
AloI	GAACNNNNNNTCC	2 cut(s)	85, 117
AluBI	AGCT	6 cut(s)	224, 489, 613, 731, 934, 960
AluI	AGCT	6 cut(s)	224, 489, 613, 731, 934, 960
Alw26I	GTCTC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	374
Aor13HI	TCCGGA	3 cut(s)	208, 256, 992
AoxI	GGCC	1 cut(s)	304
ApeKI	GCWGC	8 cut(s)	19, 22, 25, 284, 437, 827, 848, 934
ApoI	RAATTY	3 cut(s)	239, 428, 697
Asp700I	GAANNNNTTC	1 cut(s)	321
AspS9I	GGNCC	3 cut(s)	200, 259, 1021
AsuC2I	CCSGG	1 cut(s)	749
AsuHPI	GGTGA	3 cut(s)	398, 694, 911
AsuII	TTCGAA	1 cut(s)	712
AvaII	GGWCC	3 cut(s)	200, 259, 1021
BbsI	GAAGAC	1 cut(s)	168
BbvI	GCAGC	8 cut(s)	31, 34, 37, 271, 424, 814, 860, 921
BccI	CCATC	2 cut(s)	17, 563
BceAI	ACGGC	2 cut(s)	106, 255
BciT130I	CCWGG	1 cut(s)	384
BciVI	GTATCC	1 cut(s)	749
BclI	TGATCA	1 cut(s)	360
BcnI	CCSGG	1 cut(s)	749
BcoDI	GTCTC	1 cut(s)	105
BcuI	ACTAGT	1 cut(s)	34
BfaI	CTAG	2 cut(s)	35, 957
BfmI	CTRYAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	749
BisI	GCNGC	9 cut(s)	20, 23, 26, 29, 285, 438, 828, 849, 935
BlpI	GCTNAGC	1 cut(s)	736
BlsI	GCNGC	9 cut(s)	21, 24, 27, 30, 286, 439, 829, 850, 936
Bme1390I	CCNGG	2 cut(s)	384, 749
Bme18I	GGWCC	3 cut(s)	200, 259, 1021
BmgT120I	GGNCC	3 cut(s)	200, 259, 1021
BmiI	GGNNCC	1 cut(s)	261
BmrFI	CCNGG	2 cut(s)	384, 749
BmsI	GCATC	7 cut(s)	169, 301, 424, 461, 663, 991, 1105
BpiI	GAAGAC	1 cut(s)	168
BplI	GAGNNNNNCTC	2 cut(s)	491, 523
BpmI	CTGGAG	1 cut(s)	814
Bpu1102I	GCTNAGC	1 cut(s)	736
Bpu14I	TTCGAA	1 cut(s)	712
BpuEI	CTTGAG	5 cut(s)	629, 893, 911, 929, 998
BpuMI	CCSGG	1 cut(s)	749
BsaAI	YACGTR	1 cut(s)	281
BsaJI	CCNNGG	1 cut(s)	470
BsaWI	WCCGGW	3 cut(s)	208, 256, 992
BsaXI	ACNNNNNCTCC	2 cut(s)	85, 115
Bsc4I	CCNNNNNNNGG	3 cut(s)	61, 747, 928
Bse3DI	GCAATG	2 cut(s)	683, 851
BseAI	TCCGGA	3 cut(s)	208, 256, 992
BseBI	CCWGG	1 cut(s)	384
BseDI	CCNNGG	1 cut(s)	470
BseGI	GGATG	7 cut(s)	9, 338, 452, 640, 678, 989, 1006
BseLI	CCNNNNNNNGG	3 cut(s)	61, 747, 928
BseMI	GCAATG	2 cut(s)	683, 851
BseMII	CTCAG	2 cut(s)	522, 1147
BseRI	GAGGAG	1 cut(s)	195
BseXI	GCAGC	8 cut(s)	31, 34, 37, 271, 424, 814, 860, 921
BsgI	GTGCAG	4 cut(s)	38, 270, 360, 867
Bsh1236I	CGCG	1 cut(s)	1086
BshFI	GGCC	1 cut(s)	306
BsiSI	CCGG	5 cut(s)	209, 257, 741, 748, 993
BslFI	GGGAC	1 cut(s)	920
BslI	CCNNNNNNNGG	3 cut(s)	61, 747, 928
BsmAI	GTCTC	1 cut(s)	105
BsmFI	GGGAC	1 cut(s)	920
BsnI	GGCC	1 cut(s)	306
Bsp119I	TTCGAA	1 cut(s)	712
Bsp13I	TCCGGA	3 cut(s)	208, 256, 992
Bsp143I	GATC	2 cut(s)	360, 379
Bsp1720I	GCTNAGC	1 cut(s)	736
BspACI	CCGC	3 cut(s)	29, 55, 1074
BspANI	GGCC	1 cut(s)	306
BspCNI	CTCAG	2 cut(s)	521, 1146
BspEI	TCCGGA	3 cut(s)	208, 256, 992
BspFNI	CGCG	1 cut(s)	1086
BspHI	TCATGA	1 cut(s)	363
BspLI	GGNNCC	1 cut(s)	261
BspMAI	CTGCAG	1 cut(s)	442
BspPI	GGATC	1 cut(s)	374
BspT104I	TTCGAA	1 cut(s)	712
BsrBI	CCGCTC	1 cut(s)	1074
BsrDI	GCAATG	2 cut(s)	683, 851
BssECI	CCNNGG	1 cut(s)	470
BssMI	GATC	2 cut(s)	360, 379
Bst2UI	CCWGG	1 cut(s)	384
Bst4CI	ACNGT	2 cut(s)	47, 200
BstBAI	YACGTR	1 cut(s)	281
BstBI	TTCGAA	1 cut(s)	712
BstC8I	GCNNGC	1 cut(s)	733
BstDEI	CTNAG	4 cut(s)	508, 736, 1005, 1133
BstENI	CCTNNNNNAGG	1 cut(s)	926
BstF5I	GGATG	7 cut(s)	9, 338, 452, 640, 678, 989, 1006
BstFNI	CGCG	1 cut(s)	1086
BstKTI	GATC	2 cut(s)	363, 382
BstMAI	GTCTC	1 cut(s)	105
BstMBI	GATC	2 cut(s)	360, 379
BstMWI	GCNNNNNNNGC	8 cut(s)	25, 28, 63, 230, 290, 737, 848, 1137
BstNI	CCWGG	1 cut(s)	384
BstSCI	CCNGG	2 cut(s)	382, 747
BstSFI	CTRYAG	1 cut(s)	438
BstUI	CGCG	1 cut(s)	1086
BstV1I	GCAGC	8 cut(s)	31, 34, 37, 271, 424, 814, 860, 921
BstV2I	GAAGAC	1 cut(s)	168
BsuI	GTATCC	1 cut(s)	749
BsuRI	GGCC	1 cut(s)	306
BtsCI	GGATG	7 cut(s)	9, 338, 452, 640, 678, 989, 1006
Cac8I	GCNNGC	1 cut(s)	733
CciI	TCATGA	1 cut(s)	363
Cfr13I	GGNCC	3 cut(s)	200, 259, 1021
CviAII	CATG	2 cut(s)	364, 692
DdeI	CTNAG	4 cut(s)	508, 736, 1005, 1133
DpnI	GATC	2 cut(s)	362, 381
DpnII	GATC	2 cut(s)	360, 379
Eco147I	AGGCCT	1 cut(s)	306
Eco47I	GGWCC	3 cut(s)	200, 259, 1021
Eco57I	CTGAAG	3 cut(s)	180, 240, 852
EcoNI	CCTNNNNNAGG	1 cut(s)	926
EcoO109I	RGGNCCY	1 cut(s)	1021
EcoRII	CCWGG	1 cut(s)	382
EcoT22I	ATGCAT	1 cut(s)	542
FaeI	CATG	2 cut(s)	367, 695
FalI	AAGNNNNNCTT	2 cut(s)	467, 499
FaqI	GGGAC	1 cut(s)	920
FatI	CATG	2 cut(s)	363, 691
FbaI	TGATCA	1 cut(s)	360
Fnu4HI	GCNGC	9 cut(s)	20, 23, 26, 29, 285, 438, 828, 849, 935
FokI	GGATG	6 cut(s)	345, 439, 647, 685, 976, 1013
Fsp4HI	GCNGC	9 cut(s)	20, 23, 26, 29, 285, 438, 828, 849, 935
FspBI	CTAG	2 cut(s)	35, 957
GluI	GCNGC	9 cut(s)	20, 23, 26, 29, 285, 438, 828, 849, 935
GsuI	CTGGAG	1 cut(s)	814
HaeIII	GGCC	1 cut(s)	306
HapII	CCGG	5 cut(s)	209, 257, 741, 748, 993
Hin1II	CATG	2 cut(s)	367, 695
HincII	GTYRAC	3 cut(s)	50, 138, 445
HindII	GTYRAC	3 cut(s)	50, 138, 445
HindIII	AAGCTT	1 cut(s)	222
HinfI	GANTC	6 cut(s)	68, 299, 665, 744, 859, 1045
HpaII	CCGG	5 cut(s)	209, 257, 741, 748, 993
HphI	GGTGA	3 cut(s)	398, 694, 911
Hpy166II	GTNNAC	6 cut(s)	6, 50, 138, 400, 417, 445
Hpy188I	TCNGA	3 cut(s)	220, 511, 1136
Hpy188III	TCNNGA	9 cut(s)	209, 257, 364, 566, 598, 632, 657, 793, 993
Hpy8I	GTNNAC	6 cut(s)	6, 50, 138, 400, 417, 445
Hpy99I	CGWCG	2 cut(s)	276, 590
HpyAV	CCTTC	2 cut(s)	144, 932
HpyCH4III	ACNGT	2 cut(s)	47, 200
HpyCH4IV	ACGT	3 cut(s)	280, 413, 879
HpyF10VI	GCNNNNNNNGC	8 cut(s)	25, 28, 63, 230, 290, 737, 848, 1137
HpyF3I	CTNAG	4 cut(s)	508, 736, 1005, 1133
HpySE526I	ACGT	3 cut(s)	280, 413, 879
Hsp92II	CATG	2 cut(s)	367, 695
Kpn2I	TCCGGA	3 cut(s)	208, 256, 992
Ksp22I	TGATCA	1 cut(s)	360
Kzo9I	GATC	2 cut(s)	360, 379
LmnI	GCTCC	2 cut(s)	761, 931
Lsp1109I	GCAGC	8 cut(s)	31, 34, 37, 271, 424, 814, 860, 921
LweI	GCATC	7 cut(s)	169, 301, 424, 461, 663, 991, 1105
MaeI	CTAG	2 cut(s)	35, 957
MaeII	ACGT	3 cut(s)	280, 413, 879
MaeIII	GTNAC	2 cut(s)	386, 985
MalI	GATC	2 cut(s)	362, 381
MbiI	CCGCTC	1 cut(s)	1074
MboI	GATC	2 cut(s)	360, 379
MboII	GAAGA	4 cut(s)	173, 314, 697, 701
MluCI	AATT	7 cut(s)	173, 239, 428, 459, 697, 702, 967
MlyI	GAGTC	2 cut(s)	62, 738
Mph1103I	ATGCAT	1 cut(s)	542
MroI	TCCGGA	3 cut(s)	208, 256, 992
MroXI	GAANNNNTTC	1 cut(s)	321
MseI	TTAA	4 cut(s)	462, 519, 701, 1147
MslI	CAYNNNNRTG	2 cut(s)	14, 1113
MspI	CCGG	5 cut(s)	209, 257, 741, 748, 993
MspR9I	CCNGG	2 cut(s)	384, 749
MvaI	CCWGG	1 cut(s)	384
MvnI	CGCG	1 cut(s)	1086
MwoI	GCNNNNNNNGC	8 cut(s)	25, 28, 63, 230, 290, 737, 848, 1137
NciI	CCSGG	1 cut(s)	749
NdeII	GATC	2 cut(s)	360, 379
NlaIII	CATG	2 cut(s)	367, 695
NlaIV	GGNNCC	1 cut(s)	261
NmeAIII	GCCGAG	1 cut(s)	495
NmuCI	GTSAC	2 cut(s)	386, 985
NsiI	ATGCAT	1 cut(s)	542
NspV	TTCGAA	1 cut(s)	712
PagI	TCATGA	1 cut(s)	363
PceI	AGGCCT	1 cut(s)	306
PcsI	WCGNNNNNNNCGW	1 cut(s)	453
PdmI	GAANNNNTTC	1 cut(s)	321
PfeI	GAWTC	4 cut(s)	299, 665, 859, 1045
PkrI	GCNGC	9 cut(s)	21, 24, 27, 30, 286, 439, 829, 850, 936
PleI	GAGTC	2 cut(s)	62, 738
PpsI	GAGTC	2 cut(s)	62, 738
Ppu21I	YACGTR	1 cut(s)	281
PpuMI	RGGWCCY	1 cut(s)	1021
Psp5II	RGGWCCY	1 cut(s)	1021
Psp6I	CCWGG	1 cut(s)	382
PspGI	CCWGG	1 cut(s)	382
PspN4I	GGNNCC	1 cut(s)	261
PspPI	GGNCC	3 cut(s)	200, 259, 1021
PspPPI	RGGWCCY	1 cut(s)	1021
PstI	CTGCAG	1 cut(s)	442
RseI	CAYNNNNRTG	2 cut(s)	14, 1113
SaqAI	TTAA	4 cut(s)	462, 519, 701, 1147
SatI	GCNGC	9 cut(s)	20, 23, 26, 29, 285, 438, 828, 849, 935
Sau3AI	GATC	2 cut(s)	360, 379
Sau96I	GGNCC	3 cut(s)	200, 259, 1021
SchI	GAGTC	2 cut(s)	62, 738
ScrFI	CCNGG	2 cut(s)	384, 749
SfaNI	GCATC	7 cut(s)	169, 301, 424, 461, 663, 991, 1105
SfcI	CTRYAG	1 cut(s)	438
SfuI	TTCGAA	1 cut(s)	712
SinI	GGWCC	3 cut(s)	200, 259, 1021
SmiMI	CAYNNNNRTG	2 cut(s)	14, 1113
SmlI	CTYRAG	5 cut(s)	608, 872, 926, 944, 1013
SmoI	CTYRAG	5 cut(s)	608, 872, 926, 944, 1013
SpeI	ACTAGT	1 cut(s)	34
Sse9I	AATT	7 cut(s)	173, 239, 428, 459, 697, 702, 967
SseBI	AGGCCT	1 cut(s)	306
SsiI	CCGC	3 cut(s)	29, 55, 1074
SspMI	CTAG	2 cut(s)	35, 957
StuI	AGGCCT	1 cut(s)	306
StyD4I	CCNGG	2 cut(s)	382, 747
TaaI	ACNGT	2 cut(s)	47, 200
TaiI	ACGT	3 cut(s)	283, 416, 882
TaqI	TCGA	2 cut(s)	79, 712
TasI	AATT	7 cut(s)	173, 239, 428, 459, 697, 702, 967
TauI	GCSGC	1 cut(s)	31
TfiI	GAWTC	4 cut(s)	299, 665, 859, 1045
Tru1I	TTAA	4 cut(s)	462, 519, 701, 1147
Tru9I	TTAA	4 cut(s)	462, 519, 701, 1147
TseFI	GTSAC	2 cut(s)	386, 985
TseI	GCWGC	8 cut(s)	19, 22, 25, 284, 437, 827, 848, 934
Tsp45I	GTSAC	2 cut(s)	386, 985
TspDTI	ATGAA	6 cut(s)	64, 201, 360, 441, 651, 961
TspGWI	ACGGA	3 cut(s)	445, 774, 811
VpaK11BI	GGWCC	3 cut(s)	200, 259, 1021
XagI	CCTNNNNNAGG	1 cut(s)	926
XapI	RAATTY	3 cut(s)	239, 428, 697
XmnI	GAANNNNTTC	1 cut(s)	321
XspI	CTAG	2 cut(s)	35, 957
Zsp2I	ATGCAT	1 cut(s)	542

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.