Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr12

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

1709809 .. 1712905

Gene Structure 3097 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom12g02000.6

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1251 bp

ATGGGTGTCATTGATATATACAACGTTTCCTCGCTCCGATTAACCACCACCCGCAGGCCCAGCTGCGGAATCGAAGGGAGCAGAAGTAGGAGGGTGGTGGCTATGGCGTCCACAATCCCTGTGCAGCAGAAAGAAGTCAACGACGGTCAACAGCGTTTGACTGGCGACTCATTCATTCGACCCCATTTGAGGAACTTGTCTCCTTATCAGCCCATTTTACCATTCGAGGTTTTGTCAACCAGACTTGGAAGGAAGCCTGAGGACATCATCAAGTTAGATGCAAATGAAAACCCATATGGTCCTCCTCCGGAGGTTATCGAAGCTTTGGGTGCATTGAAATTCCCATATATTTATCCTGATCCTGAAAGCCGTCGATTACGTGCTGCCCTGGCAAAGGATTCGGGCCTTGAATCTGATTATATTCTCGTCGGGTGTGGTGCTGATGAGCTCATTGATTTGATTATGAGATGTGTGCTTGATCCTGGTGACAAGATTGTTGATTGTCCACCAACGTTCACAATGTATGAATTTGATGCTGCAGTAAACGCAGCTTCTGTCATCAAAGTGCCAAGGAAGACGGATTTTAGCTTGGATGTAGACGTCATTTCAGATGTTGTTTTACAGGAAAAACCAAAATGCATATTCCTAACTTCTCCCAACAATCCAGATGGGAGTATAATCAGTGATGAGATTCTCTTGAAAATTCTTGAGCTTCCCATATTGGTGGTGCTGGATGAAGCATATATTGAGTTTTCAGGACTCGAATCAAAGATGCAATGGGTGAAAAAGCATGAGAATTTAATTGTTCTGCGAACATTTAGCAAACGAGCTGGCTTAGCTGGACTCCGTGTAGGATATGGAGCATTTCCGCTGAGCATAATTGAATACCTGTGGAGAGCTAAGCAACCATATAATGTGTCTGTTACTGCTGAAGTTTCTGCTTGTGCAGCATTGCAGAATCCCACCTATCTTGAGACGGTGAAAGAAGCTTTGCTACAAGAGAGGGAGAGGCTTTTCAACCTTCTAAAGGAGCTGCCGTTTCTCAACCCGTATCCAAGCTATTCCAATTTCATTCTTTGTGAGGTTGCACCGGGAATGGATGCTAAGAAGCTGAAGGAGGACCTTGCGAAAATGGGAGTGATGATTCGTCACTACAACAACAAAGAGCTGAAGGGTTATGTTCGCGTATCTGTTGGGAAGCCTGAACACACAGATGCATTGATGGACTGCCTCAGAAGCTTGTCGTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

417

Amino Acids

46.52

Weight (kDa)

5.8

Isoelectric Point (pI)

49.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	603
AccI	GTMKAC	1 cut(s)	597
AccII	CGCG	1 cut(s)	1185
AccIII	TCCGGA	1 cut(s)	307
AciI	CCGC	3 cut(s)	52, 66, 869
AclI	AACGTT	2 cut(s)	24, 512
AclWI	GGATC	2 cut(s)	353, 473
AcsI	RAATTY	4 cut(s)	338, 527, 702, 796
AcuI	CTGAAG	3 cut(s)	951, 1133, 1190
AcyI	GRCGYC	2 cut(s)	107, 600
AfiI	CCNNNNNNNGG	5 cut(s)	54, 65, 189, 394, 1027
AgsI	TTSAA	5 cut(s)	337, 410, 700, 884, 1018
AjnI	CCWGG	2 cut(s)	387, 481
Alw21I	GWGCWC	1 cut(s)	450
Alw26I	GTCTC	2 cut(s)	204, 968
AlwI	GGATC	2 cut(s)	353, 473
AlwNI	CAGNNNCTG	1 cut(s)	554
Aor13HI	TCCGGA	1 cut(s)	307
AoxI	GGCC	2 cut(s)	56, 403
ApeKI	GCWGC	7 cut(s)	63, 124, 383, 536, 548, 947, 1033
ApoI	RAATTY	4 cut(s)	338, 527, 702, 796
AspS9I	GGNCC	4 cut(s)	57, 299, 403, 1120
AsuC2I	CCSGG	1 cut(s)	1092
AsuHPI	GGTGA	3 cut(s)	497, 793, 991
AvaII	GGWCC	2 cut(s)	299, 1120
AxyI	CCTNAGG	1 cut(s)	258
BanII	GRGCYC	1 cut(s)	450
BarI	GAAGNNNNNNTAC	2 cut(s)	978, 1010
BbsI	GAAGAC	1 cut(s)	581
Bbv12I	GWGCWC	1 cut(s)	450
BbvI	GCAGC	7 cut(s)	50, 136, 370, 523, 560, 959, 1020
BccI	CCATC	2 cut(s)	662, 1216
BceAI	ACGGC	2 cut(s)	354, 1021
BcgI	CGANNNNNNTGC	2 cut(s)	381, 415
BciT130I	CCWGG	2 cut(s)	389, 483
BciVI	GTATCC	1 cut(s)	1062
BcnI	CCSGG	1 cut(s)	1092
BcoDI	GTCTC	2 cut(s)	204, 968
BfmI	CTRYAG	1 cut(s)	537
BfuI	GTATCC	1 cut(s)	1062
BisI	GCNGC	7 cut(s)	64, 125, 384, 537, 549, 948, 1034
BlpI	GCTNAGC	3 cut(s)	835, 872, 900
BlsI	GCNGC	7 cut(s)	65, 126, 385, 538, 550, 949, 1035
Bme1390I	CCNGG	3 cut(s)	389, 483, 1092
Bme18I	GGWCC	2 cut(s)	299, 1120
BmgT120I	GGNCC	4 cut(s)	57, 299, 403, 1120
BmrFI	CCNGG	3 cut(s)	389, 483, 1092
BmsI	GCATC	5 cut(s)	268, 523, 762, 1090, 1204
BpiI	GAAGAC	1 cut(s)	581
Bpu1102I	GCTNAGC	3 cut(s)	835, 872, 900
BpuEI	CTTGAG	2 cut(s)	728, 992
BpuMI	CCSGG	1 cut(s)	1092
BsaAI	YACGTR	1 cut(s)	380
BsaHI	GRCGYC	2 cut(s)	107, 600
BsaJI	CCNNGG	2 cut(s)	387, 569
BsaWI	WCCGGW	1 cut(s)	307
BsaXI	ACNNNNNCTCC	4 cut(s)	70, 100, 1022, 1052
Bsc4I	CCNNNNNNNGG	5 cut(s)	54, 65, 189, 394, 1027
Bse1I	ACTGG	1 cut(s)	166
Bse21I	CCTNAGG	1 cut(s)	258
Bse3DI	GCAATG	2 cut(s)	782, 950
BseAI	TCCGGA	1 cut(s)	307
BseBI	CCWGG	2 cut(s)	389, 483
BseDI	CCNNGG	2 cut(s)	387, 569
BseGI	GGATG	3 cut(s)	598, 739, 1105
BseLI	CCNNNNNNNGG	5 cut(s)	54, 65, 189, 394, 1027
BseMI	GCAATG	2 cut(s)	782, 950
BseMII	CTCAG	3 cut(s)	249, 863, 1246
BseNI	ACTGG	1 cut(s)	166
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	7 cut(s)	50, 136, 370, 523, 560, 959, 1020
BseYI	CCCAGC	1 cut(s)	59
BsgI	GTGCAG	2 cut(s)	143, 966
Bsh1236I	CGCG	1 cut(s)	1185
BshFI	GGCC	2 cut(s)	58, 405
BsiHKAI	GWGCWC	1 cut(s)	450
BsiSI	CCGG	2 cut(s)	308, 1091
BslI	CCNNNNNNNGG	5 cut(s)	54, 65, 189, 394, 1027
BsmAI	GTCTC	2 cut(s)	204, 968
BsmBI	CGTCTC	1 cut(s)	968
BsnI	GGCC	2 cut(s)	58, 405
Bsp1286I	GDGCHC	1 cut(s)	450
Bsp13I	TCCGGA	1 cut(s)	307
Bsp143I	GATC	2 cut(s)	358, 478
Bsp1720I	GCTNAGC	3 cut(s)	835, 872, 900
BspACI	CCGC	3 cut(s)	52, 66, 869
BspANI	GGCC	2 cut(s)	58, 405
BspCNI	CTCAG	3 cut(s)	250, 864, 1245
BspEI	TCCGGA	1 cut(s)	307
BspFNI	CGCG	1 cut(s)	1185
BspMAI	CTGCAG	1 cut(s)	541
BspPI	GGATC	2 cut(s)	353, 473
BsrDI	GCAATG	2 cut(s)	782, 950
BsrI	ACTGG	1 cut(s)	166
BssECI	CCNNGG	2 cut(s)	387, 569
BssMI	GATC	2 cut(s)	358, 478
BssNI	GRCGYC	2 cut(s)	107, 600
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	2 cut(s)	389, 483
Bst4CI	ACNGT	2 cut(s)	146, 979
BstACI	GRCGYC	2 cut(s)	107, 600
BstBAI	YACGTR	1 cut(s)	380
BstC8I	GCNNGC	2 cut(s)	56, 832
BstDEI	CTNAG	6 cut(s)	258, 835, 872, 900, 1104, 1232
BstENI	CCTNNNNNAGG	2 cut(s)	392, 1025
BstF5I	GGATG	3 cut(s)	598, 739, 1105
BstFNI	CGCG	1 cut(s)	1185
BstKTI	GATC	2 cut(s)	361, 481
BstMAI	GTCTC	2 cut(s)	204, 968
BstMBI	GATC	2 cut(s)	358, 478
BstMWI	GCNNNNNNNGC	7 cut(s)	60, 329, 389, 545, 836, 947, 1236
BstNI	CCWGG	2 cut(s)	389, 483
BstSCI	CCNGG	3 cut(s)	387, 481, 1090
BstSFI	CTRYAG	1 cut(s)	537
BstUI	CGCG	1 cut(s)	1185
BstV1I	GCAGC	7 cut(s)	50, 136, 370, 523, 560, 959, 1020
BstV2I	GAAGAC	1 cut(s)	581
BstXI	CCANNNNNNTGG	1 cut(s)	724
Bsu36I	CCTNAGG	1 cut(s)	258
BsuI	GTATCC	1 cut(s)	1062
BsuRI	GGCC	2 cut(s)	58, 405
BtsCI	GGATG	3 cut(s)	598, 739, 1105
BtsIMutI	CAGTG	1 cut(s)	688
Cac8I	GCNNGC	2 cut(s)	56, 832
CaiI	CAGNNNCTG	1 cut(s)	554
Cfr13I	GGNCC	4 cut(s)	57, 299, 403, 1120
CseI	GACGC	1 cut(s)	96
CspCI	CAANNNNNGTGG	2 cut(s)	952, 987
CviAII	CATG	1 cut(s)	791
DdeI	CTNAG	6 cut(s)	258, 835, 872, 900, 1104, 1232
DpnI	GATC	2 cut(s)	360, 480
DpnII	GATC	2 cut(s)	358, 478
Ecl136II	GAGCTC	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	569
Eco24I	GRGCYC	1 cut(s)	450
Eco47I	GGWCC	2 cut(s)	299, 1120
Eco53kI	GAGCTC	1 cut(s)	448
Eco57I	CTGAAG	3 cut(s)	951, 1133, 1190
Eco81I	CCTNAGG	1 cut(s)	258
EcoICRI	GAGCTC	1 cut(s)	448
EcoNI	CCTNNNNNAGG	2 cut(s)	392, 1025
EcoO109I	RGGNCCY	1 cut(s)	1120
EcoRII	CCWGG	2 cut(s)	387, 481
EcoT14I	CCWWGG	1 cut(s)	569
EcoT22I	ATGCAT	2 cut(s)	641, 1219
EcoT38I	GRGCYC	1 cut(s)	450
ErhI	CCWWGG	1 cut(s)	569
Esp3I	CGTCTC	1 cut(s)	968
FaeI	CATG	1 cut(s)	794
FatI	CATG	1 cut(s)	790
FauI	CCCGC	1 cut(s)	59
FauNDI	CATATG	1 cut(s)	295
FblI	GTMKAC	1 cut(s)	597
Fnu4HI	GCNGC	7 cut(s)	64, 125, 384, 537, 549, 948, 1034
FokI	GGATG	3 cut(s)	605, 746, 1112
FriOI	GRGCYC	1 cut(s)	450
Fsp4HI	GCNGC	7 cut(s)	64, 125, 384, 537, 549, 948, 1034
GluI	GCNGC	7 cut(s)	64, 125, 384, 537, 549, 948, 1034
GsaI	CCCAGC	1 cut(s)	63
HaeIII	GGCC	2 cut(s)	58, 405
HapII	CCGG	2 cut(s)	308, 1091
HgaI	GACGC	1 cut(s)	96
Hin1I	GRCGYC	2 cut(s)	107, 600
Hin1II	CATG	1 cut(s)	794
HincII	GTYRAC	3 cut(s)	139, 149, 237
HindII	GTYRAC	3 cut(s)	139, 149, 237
HindIII	AAGCTT	3 cut(s)	321, 987, 1237
HpaII	CCGG	2 cut(s)	308, 1091
HphI	GGTGA	3 cut(s)	497, 793, 991
Hpy166II	GTNNAC	8 cut(s)	111, 139, 149, 237, 506, 516, 544, 598
Hpy188I	TCNGA	4 cut(s)	38, 415, 610, 1235
Hpy188III	TCNNGA	8 cut(s)	308, 356, 362, 665, 697, 707, 756, 971
Hpy8I	GTNNAC	8 cut(s)	111, 139, 149, 237, 506, 516, 544, 598
Hpy99I	CGWCG	3 cut(s)	146, 375, 431
HpyAV	CCTTC	5 cut(s)	68, 243, 1031, 1108, 1165
HpyCH4III	ACNGT	2 cut(s)	146, 979
HpyCH4IV	ACGT	4 cut(s)	24, 379, 512, 600
HpyF10VI	GCNNNNNNNGC	7 cut(s)	60, 329, 389, 545, 836, 947, 1236
HpyF3I	CTNAG	6 cut(s)	258, 835, 872, 900, 1104, 1232
HpySE526I	ACGT	4 cut(s)	24, 379, 512, 600
Hsp92I	GRCGYC	2 cut(s)	107, 600
Hsp92II	CATG	1 cut(s)	794
Kpn2I	TCCGGA	1 cut(s)	307
Kzo9I	GATC	2 cut(s)	358, 478
LmnI	GCTCC	4 cut(s)	39, 78, 860, 1030
Lsp1109I	GCAGC	7 cut(s)	50, 136, 370, 523, 560, 959, 1020
LweI	GCATC	5 cut(s)	268, 523, 762, 1090, 1204
MaeII	ACGT	4 cut(s)	24, 379, 512, 600
MaeIII	GTNAC	3 cut(s)	485, 922, 1148
MalI	GATC	2 cut(s)	360, 480
MboI	GATC	2 cut(s)	358, 478
MboII	GAAGA	1 cut(s)	586
MhlI	GDGCHC	1 cut(s)	450
MluCI	AATT	7 cut(s)	338, 527, 702, 796, 801, 879, 1066
MlyI	GAGTC	3 cut(s)	161, 753, 837
Mph1103I	ATGCAT	2 cut(s)	641, 1219
MroI	TCCGGA	1 cut(s)	307
MseI	TTAA	3 cut(s)	41, 800, 1249
MslI	CAYNNNNRTG	3 cut(s)	563, 722, 1212
MspA1I	CMGCKG	2 cut(s)	63, 871
MspI	CCGG	2 cut(s)	308, 1091
MspR9I	CCNGG	3 cut(s)	389, 483, 1092
MvaI	CCWGG	2 cut(s)	389, 483
MvnI	CGCG	1 cut(s)	1185
MwoI	GCNNNNNNNGC	7 cut(s)	60, 329, 389, 545, 836, 947, 1236
NciI	CCSGG	1 cut(s)	1092
NdeI	CATATG	1 cut(s)	295
NdeII	GATC	2 cut(s)	358, 478
NlaIII	CATG	1 cut(s)	794
NmuCI	GTSAC	2 cut(s)	485, 1148
NsiI	ATGCAT	2 cut(s)	641, 1219
PfeI	GAWTC	7 cut(s)	69, 398, 410, 691, 764, 958, 1144
PkrI	GCNGC	7 cut(s)	65, 126, 385, 538, 550, 949, 1035
PleI	GAGTC	3 cut(s)	161, 753, 837
PpsI	GAGTC	3 cut(s)	161, 753, 837
Ppu21I	YACGTR	1 cut(s)	380
PpuMI	RGGWCCY	1 cut(s)	1120
Psp124BI	GAGCTC	1 cut(s)	450
Psp1406I	AACGTT	2 cut(s)	24, 512
Psp5II	RGGWCCY	1 cut(s)	1120
Psp6I	CCWGG	2 cut(s)	387, 481
PspFI	CCCAGC	1 cut(s)	59
PspGI	CCWGG	2 cut(s)	387, 481
PspPI	GGNCC	4 cut(s)	57, 299, 403, 1120
PspPPI	RGGWCCY	1 cut(s)	1120
PstI	CTGCAG	1 cut(s)	541
PstNI	CAGNNNCTG	1 cut(s)	554
PvuII	CAGCTG	1 cut(s)	63
RseI	CAYNNNNRTG	3 cut(s)	563, 722, 1212
SacI	GAGCTC	1 cut(s)	450
SaqAI	TTAA	3 cut(s)	41, 800, 1249
SatI	GCNGC	7 cut(s)	64, 125, 384, 537, 549, 948, 1034
Sau3AI	GATC	2 cut(s)	358, 478
Sau96I	GGNCC	4 cut(s)	57, 299, 403, 1120
SchI	GAGTC	3 cut(s)	161, 753, 837
ScrFI	CCNGG	3 cut(s)	389, 483, 1092
SduI	GDGCHC	1 cut(s)	450
SfaNI	GCATC	5 cut(s)	268, 523, 762, 1090, 1204
SfcI	CTRYAG	1 cut(s)	537
SinI	GGWCC	2 cut(s)	299, 1120
SmiMI	CAYNNNNRTG	3 cut(s)	563, 722, 1212
SmlI	CTYRAG	2 cut(s)	707, 971
SmoI	CTYRAG	2 cut(s)	707, 971
Sse9I	AATT	7 cut(s)	338, 527, 702, 796, 801, 879, 1066
SsiI	CCGC	3 cut(s)	52, 66, 869
SstI	GAGCTC	1 cut(s)	450
StyD4I	CCNGG	3 cut(s)	387, 481, 1090
StyI	CCWWGG	1 cut(s)	569
TaaI	ACNGT	2 cut(s)	146, 979
TaiI	ACGT	4 cut(s)	27, 382, 515, 603
TaqI	TCGA	6 cut(s)	72, 178, 225, 318, 373, 762
TasI	AATT	7 cut(s)	338, 527, 702, 796, 801, 879, 1066
TfiI	GAWTC	7 cut(s)	69, 398, 410, 691, 764, 958, 1144
Tru1I	TTAA	3 cut(s)	41, 800, 1249
Tru9I	TTAA	3 cut(s)	41, 800, 1249
TscAI	CASTG	1 cut(s)	688
TseFI	GTSAC	2 cut(s)	485, 1148
TseI	GCWGC	7 cut(s)	63, 124, 383, 536, 548, 947, 1033
Tsp45I	GTSAC	2 cut(s)	485, 1148
TspDTI	ATGAA	5 cut(s)	163, 300, 540, 750, 1060
TspGWI	ACGGA	2 cut(s)	593, 836
TspRI	CASTG	1 cut(s)	688
VpaK11BI	GGWCC	2 cut(s)	299, 1120
XagI	CCTNNNNNAGG	2 cut(s)	392, 1025
XapI	RAATTY	4 cut(s)	338, 527, 702, 796
XmiI	GTMKAC	1 cut(s)	597
ZraI	GACGTC	1 cut(s)	601
Zsp2I	ATGCAT	2 cut(s)	641, 1219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.