Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0005773

Physical Location & Seq

Genomic Coordinates Reverse (-)

8321070 .. 8327686

Gene Structure 6617 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G004360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGGGTGTGATTAATCTCTCCCACGCTTCCTCACTTCACTTGACTAATCCCACTTCCCCAACACCCAGTTCTAAAAGGAATAGTAGACCCACCTCTGTCATAGCCATGTCCACCATCCCCGTGCAGCAGCAGCCGCCGCTAGTCAATGACGGTCAACACCGGTTGACCGGCGACTCTTTCATTCGACCCCATTTGAGAACCTTGTCTCCTTATCAACCCATTTTGCCGTTTGAGGTGTTGTCAACCCGACTTGGTAGGAAGCCTGAAGACATCATCAAATTAGATGCAAATGAAAACCCTTACGGTCCTCCTCCGGAGGTTTCTGAAGCCTTGGGTGCATTGAAATTCCCATATATTTATCCGGACCCTGAAAGCCGTCGCTTACGTGCTGCACTTGCAAAGGATTCAGGCCTTGATGCTGAATATCTTCTTGCAGGATGTGGTGCAGATGAACTCATTGATTTGATCATGAGATGTGTGCTTGATCCTGGTGACAAGATTGTGGACTGCCCTCCCACGTTCACAATGTATGAATTTGATGCTGCAGTCAACGGGGCATCCGTAATTAAAGTGCCGAGGAAGTCAAACTTTAGCTTGAATGTAGAGGTCATCTCAGATGTAGTTAAACAAGAAAAACCTAAATGCATATTCCTAACTTCTCCAAACAATCCAGATGGGAGTATAATCAGCGACGACATTCTCTTGAAAATCCTTGAGCTTCCTATATTGGTTGTTCTGGATGAAGCATATATTGAGTTTTCTGGACTTGAATCAAGGATGCAATGGGTGAAGAAGCATGAGAATTTAATTGTTCTTCGAACATTTAGCAAACGAGCTGGCTTAGCCGGACTCCGGGTGGGATACGGAGCATTTCCCTTGACAATCATTGAATATCTCTGGAGAGCAAAGCAACCATATAATGTGTCCGTTGCTGCTGAAGTTTCTGCCTGTGCAGCATTGCAGAATCCCACCTACCTTGAGAACGTGAAAAATGCTTTACTGCAAGAAAGGGACAGGCTTTATCACCTTCTCAAGGAGCTGCCATTTCTCAAGCCTTATCCTAGCTATTCCAATTTCATTCTTTGTGAGGTCACATCCGGAATGGATGCTAAGAAACTCAAGGAGGACCTTGCAAAAATGGGTGTGATGATTCGTCATTACAACAACAAAGAGTTGAGCGGTTATGTTCGCGTATCAGTTGGGAAGCCTGAACACACAGATGCCTTAATTGATTGCCTCAGACGCTTATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000105 GO:0003674 GO:0003824 GO:0004400 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006547 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008483 GO:0008652 GO:0009058 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0016053 GO:0016740 GO:0016769 GO:0018130 GO:0019438 GO:0019752 GO:0034641 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046394 GO:0046483 GO:0052803 GO:0071704 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00340 ko00350 ko00360 ko00400 ko00401 ko00960 ko01100 ko01110 ko01130 ko01230 map00340 map00350 map00360 map00400 map00401 map00960 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Aminotran_1_2

Protein Analysis

417

Amino Acids

46.44

Weight (kDa)

7.08

Isoelectric Point (pI)

43.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Aminotran_1_2	PF00155	90 - 411	1.1e-53	Aminotransferase class I and II

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005773)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT1G71920 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330 AT5G10330
fragaria_vesca	FvH4_7g02740
malus_domestica	MD12G1021300.v1.1
prunus_persica	Prupe.6G194700_v2.0.a1
pyrus_communis	pycom12g02000 pycom14g01770
rosa_chinensis	RchiOBHm_Chr1g0322001
rosa_laevigata	RLG00000030395
rosa_multiflora	Rmu_sc0001168.1_g000006
rosa_roxburghii	Rroxscaffold_4G00327360
rosa_rugosa	Rorug01G0035000
rosa_samantha	Rh1BG045900 Rh1CG052300 Rh1DG056500
rosa_wichuraiana	Rw1G004360

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	1179
AccI	GTMKAC	1 cut(s)	85
AccII	CGCG	1 cut(s)	1191
AccIII	TCCGGA	3 cut(s)	313, 361, 1097
AciI	CCGC	3 cut(s)	134, 137, 1179
AclWI	GGATC	1 cut(s)	479
AcsI	RAATTY	3 cut(s)	344, 533, 802
AcuI	CTGAAG	3 cut(s)	285, 345, 957
AfiI	CCNNNNNNNGG	2 cut(s)	852, 1033
AgeI	ACCGGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	343, 598, 706, 770, 890
AjnI	CCWGG	1 cut(s)	487
AjuI	GAANNNNNNNTTGG	2 cut(s)	52, 84
AloI	GAACNNNNNNTCC	2 cut(s)	190, 222
AluBI	AGCT	5 cut(s)	594, 718, 836, 1039, 1065
AluI	AGCT	5 cut(s)	594, 718, 836, 1039, 1065
Alw26I	GTCTC	1 cut(s)	210
AlwI	GGATC	1 cut(s)	479
Aor13HI	TCCGGA	3 cut(s)	313, 361, 1097
AoxI	GGCC	1 cut(s)	409
ApeKI	GCWGC	8 cut(s)	124, 127, 130, 389, 542, 932, 953, 1039
ApoI	RAATTY	3 cut(s)	344, 533, 802
AseI	ATTAAT	1 cut(s)	12
AsiGI	ACCGGT	1 cut(s)	159
Asp700I	GAANNNNTTC	1 cut(s)	426
AspS9I	GGNCC	3 cut(s)	305, 364, 1126
AsuC2I	CCSGG	1 cut(s)	854
AsuHPI	GGTGA	3 cut(s)	503, 799, 1016
AsuII	TTCGAA	1 cut(s)	817
AvaII	GGWCC	3 cut(s)	305, 364, 1126
BbsI	GAAGAC	1 cut(s)	273
BbvI	GCAGC	8 cut(s)	136, 139, 142, 376, 529, 919, 965, 1026
BccI	CCATC	2 cut(s)	122, 668
BceAI	ACGGC	2 cut(s)	211, 360
BciT130I	CCWGG	1 cut(s)	489
BciVI	GTATCC	1 cut(s)	854
BclI	TGATCA	1 cut(s)	465
BcnI	CCSGG	1 cut(s)	854
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	140, 1062
BfmI	CTRYAG	1 cut(s)	543
BfuI	GTATCC	1 cut(s)	854
BlpI	GCTNAGC	1 cut(s)	841
Bme1390I	CCNGG	2 cut(s)	489, 854
Bme18I	GGWCC	3 cut(s)	305, 364, 1126
BmgT120I	GGNCC	3 cut(s)	305, 364, 1126
BmiI	GGNNCC	1 cut(s)	366
BmrFI	CCNGG	2 cut(s)	489, 854
BmrI	ACTGGG	1 cut(s)	60
BmsI	GCATC	7 cut(s)	274, 406, 529, 566, 768, 1096, 1210
BmuI	ACTGGG	1 cut(s)	60
BpiI	GAAGAC	1 cut(s)	273
BplI	GAGNNNNNCTC	2 cut(s)	596, 628
BpmI	CTGGAG	1 cut(s)	919
Bpu1102I	GCTNAGC	1 cut(s)	841
Bpu14I	TTCGAA	1 cut(s)	817
BpuEI	CTTGAG	5 cut(s)	734, 998, 1016, 1034, 1103
BpuMI	CCSGG	1 cut(s)	854
BsaAI	YACGTR	1 cut(s)	386
BsaJI	CCNNGG	2 cut(s)	330, 575
BsaWI	WCCGGW	4 cut(s)	159, 313, 361, 1097
BsaXI	ACNNNNNCTCC	2 cut(s)	190, 220
Bsc4I	CCNNNNNNNGG	2 cut(s)	852, 1033
Bse118I	RCCGGY	2 cut(s)	159, 167
Bse1I	ACTGG	1 cut(s)	66
Bse3DI	GCAATG	2 cut(s)	788, 956
BseAI	TCCGGA	3 cut(s)	313, 361, 1097
BseBI	CCWGG	1 cut(s)	489
BseDI	CCNNGG	2 cut(s)	330, 575
BseGI	GGATG	7 cut(s)	114, 443, 557, 745, 783, 1094, 1111
BseLI	CCNNNNNNNGG	2 cut(s)	852, 1033
BseMI	GCAATG	2 cut(s)	788, 956
BseMII	CTCAG	2 cut(s)	627, 1252
BseNI	ACTGG	1 cut(s)	66
BseRI	GAGGAG	1 cut(s)	300
BseXI	GCAGC	8 cut(s)	136, 139, 142, 376, 529, 919, 965, 1026
BsgI	GTGCAG	4 cut(s)	143, 375, 465, 972
Bsh1236I	CGCG	1 cut(s)	1191
BshFI	GGCC	1 cut(s)	411
BshTI	ACCGGT	1 cut(s)	159
BsiSI	CCGG	7 cut(s)	160, 168, 314, 362, 846, 853, 1098
BslFI	GGGAC	1 cut(s)	1025
BslI	CCNNNNNNNGG	2 cut(s)	852, 1033
BsmAI	GTCTC	1 cut(s)	210
BsmFI	GGGAC	1 cut(s)	1025
BsnI	GGCC	1 cut(s)	411
Bsp119I	TTCGAA	1 cut(s)	817
Bsp13I	TCCGGA	3 cut(s)	313, 361, 1097
Bsp143I	GATC	2 cut(s)	465, 484
Bsp1720I	GCTNAGC	1 cut(s)	841
BspACI	CCGC	3 cut(s)	134, 137, 1179
BspANI	GGCC	1 cut(s)	411
BspCNI	CTCAG	2 cut(s)	626, 1251
BspEI	TCCGGA	3 cut(s)	313, 361, 1097
BspFNI	CGCG	1 cut(s)	1191
BspHI	TCATGA	1 cut(s)	468
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	547
BspPI	GGATC	1 cut(s)	479
BspT104I	TTCGAA	1 cut(s)	817
BsrBI	CCGCTC	1 cut(s)	1179
BsrDI	GCAATG	2 cut(s)	788, 956
BsrFI	RCCGGY	2 cut(s)	159, 167
BsrI	ACTGG	1 cut(s)	66
BssAI	RCCGGY	2 cut(s)	159, 167
BssECI	CCNNGG	2 cut(s)	330, 575
BssMI	GATC	2 cut(s)	465, 484
BssT1I	CCWWGG	1 cut(s)	330
Bst2UI	CCWGG	1 cut(s)	489
Bst4CI	ACNGT	2 cut(s)	152, 305
BstBAI	YACGTR	1 cut(s)	386
BstBI	TTCGAA	1 cut(s)	817
BstC8I	GCNNGC	1 cut(s)	838
BstDEI	CTNAG	4 cut(s)	613, 841, 1110, 1238
BstENI	CCTNNNNNAGG	1 cut(s)	1031
BstF5I	GGATG	7 cut(s)	114, 443, 557, 745, 783, 1094, 1111
BstFNI	CGCG	1 cut(s)	1191
BstKTI	GATC	2 cut(s)	468, 487
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	2 cut(s)	465, 484
BstMWI	GCNNNNNNNGC	8 cut(s)	130, 133, 136, 335, 395, 842, 953, 1242
BstNI	CCWGG	1 cut(s)	489
BstSCI	CCNGG	2 cut(s)	487, 852
BstSFI	CTRYAG	1 cut(s)	543
BstUI	CGCG	1 cut(s)	1191
BstV1I	GCAGC	8 cut(s)	136, 139, 142, 376, 529, 919, 965, 1026
BstV2I	GAAGAC	1 cut(s)	273
BsuI	GTATCC	1 cut(s)	854
BsuRI	GGCC	1 cut(s)	411
BtsCI	GGATG	7 cut(s)	114, 443, 557, 745, 783, 1094, 1111
Cac8I	GCNNGC	1 cut(s)	838
CciI	TCATGA	1 cut(s)	468
Cfr10I	RCCGGY	2 cut(s)	159, 167
Cfr13I	GGNCC	3 cut(s)	305, 364, 1126
CspAI	ACCGGT	1 cut(s)	159
CspCI	CAANNNNNGTGG	2 cut(s)	958, 993
CviAII	CATG	3 cut(s)	106, 469, 797
DdeI	CTNAG	4 cut(s)	613, 841, 1110, 1238
DpnI	GATC	2 cut(s)	467, 486
DpnII	GATC	2 cut(s)	465, 484
Eco130I	CCWWGG	1 cut(s)	330
Eco147I	AGGCCT	1 cut(s)	411
Eco47I	GGWCC	3 cut(s)	305, 364, 1126
Eco57I	CTGAAG	3 cut(s)	285, 345, 957
EcoNI	CCTNNNNNAGG	1 cut(s)	1031
EcoO109I	RGGNCCY	1 cut(s)	1126
EcoRII	CCWGG	1 cut(s)	487
EcoT14I	CCWWGG	1 cut(s)	330
EcoT22I	ATGCAT	1 cut(s)	647
ErhI	CCWWGG	1 cut(s)	330
FaeI	CATG	3 cut(s)	109, 472, 800
FalI	AAGNNNNNCTT	2 cut(s)	572, 604
FaqI	GGGAC	1 cut(s)	1025
FatI	CATG	3 cut(s)	105, 468, 796
FbaI	TGATCA	1 cut(s)	465
FblI	GTMKAC	1 cut(s)	85
FokI	GGATG	7 cut(s)	101, 450, 544, 752, 790, 1081, 1118
FspBI	CTAG	2 cut(s)	140, 1062
GsuI	CTGGAG	1 cut(s)	919
HaeIII	GGCC	1 cut(s)	411
HapII	CCGG	7 cut(s)	160, 168, 314, 362, 846, 853, 1098
Hin1II	CATG	3 cut(s)	109, 472, 800
HincII	GTYRAC	4 cut(s)	155, 165, 243, 550
HindII	GTYRAC	4 cut(s)	155, 165, 243, 550
HinfI	GANTC	6 cut(s)	173, 404, 770, 849, 964, 1150
HpaII	CCGG	7 cut(s)	160, 168, 314, 362, 846, 853, 1098
HphI	GGTGA	3 cut(s)	503, 799, 1016
Hpy166II	GTNNAC	8 cut(s)	86, 111, 155, 165, 243, 505, 522, 550
Hpy188I	TCNGA	3 cut(s)	325, 616, 1241
Hpy188III	TCNNGA	9 cut(s)	314, 362, 469, 671, 703, 737, 762, 898, 1098
Hpy8I	GTNNAC	8 cut(s)	86, 111, 155, 165, 243, 505, 522, 550
Hpy99I	CGWCG	2 cut(s)	381, 695
HpyAV	CCTTC	1 cut(s)	1037
HpyCH4III	ACNGT	2 cut(s)	152, 305
HpyCH4IV	ACGT	3 cut(s)	385, 518, 984
HpyF10VI	GCNNNNNNNGC	8 cut(s)	130, 133, 136, 335, 395, 842, 953, 1242
HpyF3I	CTNAG	4 cut(s)	613, 841, 1110, 1238
HpySE526I	ACGT	3 cut(s)	385, 518, 984
Hsp92II	CATG	3 cut(s)	109, 472, 800
Kpn2I	TCCGGA	3 cut(s)	313, 361, 1097
Ksp22I	TGATCA	1 cut(s)	465
Kzo9I	GATC	2 cut(s)	465, 484
LmnI	GCTCC	2 cut(s)	866, 1036
Lsp1109I	GCAGC	8 cut(s)	136, 139, 142, 376, 529, 919, 965, 1026
LweI	GCATC	7 cut(s)	274, 406, 529, 566, 768, 1096, 1210
MaeI	CTAG	2 cut(s)	140, 1062
MaeII	ACGT	3 cut(s)	385, 518, 984
MaeIII	GTNAC	2 cut(s)	491, 1090
MalI	GATC	2 cut(s)	467, 486
MbiI	CCGCTC	1 cut(s)	1179
MboI	GATC	2 cut(s)	465, 484
MboII	GAAGA	4 cut(s)	278, 419, 802, 806
MluCI	AATT	8 cut(s)	278, 344, 533, 564, 802, 807, 1072, 1227
MlyI	GAGTC	2 cut(s)	167, 843
Mph1103I	ATGCAT	1 cut(s)	647
MroI	TCCGGA	3 cut(s)	313, 361, 1097
MroXI	GAANNNNTTC	1 cut(s)	426
MseI	TTAA	6 cut(s)	12, 567, 624, 806, 1226, 1252
MslI	CAYNNNNRTG	3 cut(s)	104, 119, 1218
MspI	CCGG	7 cut(s)	160, 168, 314, 362, 846, 853, 1098
MspR9I	CCNGG	2 cut(s)	489, 854
MvaI	CCWGG	1 cut(s)	489
MvnI	CGCG	1 cut(s)	1191
MwoI	GCNNNNNNNGC	8 cut(s)	130, 133, 136, 335, 395, 842, 953, 1242
NciI	CCSGG	1 cut(s)	854
NdeII	GATC	2 cut(s)	465, 484
NlaIII	CATG	3 cut(s)	109, 472, 800
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	600
NmuCI	GTSAC	2 cut(s)	491, 1090
NsiI	ATGCAT	1 cut(s)	647
NspV	TTCGAA	1 cut(s)	817
PagI	TCATGA	1 cut(s)	468
PceI	AGGCCT	1 cut(s)	411
PcsI	WCGNNNNNNNCGW	1 cut(s)	558
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	4 cut(s)	404, 770, 964, 1150
PinAI	ACCGGT	1 cut(s)	159
PleI	GAGTC	2 cut(s)	167, 843
PpsI	GAGTC	2 cut(s)	167, 843
Ppu21I	YACGTR	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	1126
PshBI	ATTAAT	1 cut(s)	12
Psp5II	RGGWCCY	1 cut(s)	1126
Psp6I	CCWGG	1 cut(s)	487
PspGI	CCWGG	1 cut(s)	487
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	3 cut(s)	305, 364, 1126
PspPPI	RGGWCCY	1 cut(s)	1126
PstI	CTGCAG	1 cut(s)	547
RseI	CAYNNNNRTG	3 cut(s)	104, 119, 1218
SaqAI	TTAA	6 cut(s)	12, 567, 624, 806, 1226, 1252
Sau3AI	GATC	2 cut(s)	465, 484
Sau96I	GGNCC	3 cut(s)	305, 364, 1126
SchI	GAGTC	2 cut(s)	167, 843
ScrFI	CCNGG	2 cut(s)	489, 854
SfaNI	GCATC	7 cut(s)	274, 406, 529, 566, 768, 1096, 1210
SfcI	CTRYAG	1 cut(s)	543
SfuI	TTCGAA	1 cut(s)	817
SinI	GGWCC	3 cut(s)	305, 364, 1126
SmiMI	CAYNNNNRTG	3 cut(s)	104, 119, 1218
SmlI	CTYRAG	5 cut(s)	713, 977, 1031, 1049, 1118
SmoI	CTYRAG	5 cut(s)	713, 977, 1031, 1049, 1118
Sse9I	AATT	8 cut(s)	278, 344, 533, 564, 802, 807, 1072, 1227
SseBI	AGGCCT	1 cut(s)	411
SsiI	CCGC	3 cut(s)	134, 137, 1179
SspMI	CTAG	2 cut(s)	140, 1062
StuI	AGGCCT	1 cut(s)	411
StyD4I	CCNGG	2 cut(s)	487, 852
StyI	CCWWGG	1 cut(s)	330
TaaI	ACNGT	2 cut(s)	152, 305
TaiI	ACGT	3 cut(s)	388, 521, 987
TaqI	TCGA	2 cut(s)	184, 817
TasI	AATT	8 cut(s)	278, 344, 533, 564, 802, 807, 1072, 1227
TauI	GCSGC	2 cut(s)	136, 139
TfiI	GAWTC	4 cut(s)	404, 770, 964, 1150
Tru1I	TTAA	6 cut(s)	12, 567, 624, 806, 1226, 1252
Tru9I	TTAA	6 cut(s)	12, 567, 624, 806, 1226, 1252
TseFI	GTSAC	2 cut(s)	491, 1090
TseI	GCWGC	8 cut(s)	124, 127, 130, 389, 542, 932, 953, 1039
Tsp45I	GTSAC	2 cut(s)	491, 1090
TspDTI	ATGAA	6 cut(s)	169, 306, 465, 546, 756, 1066
TspGWI	ACGGA	3 cut(s)	550, 879, 916
VpaK11BI	GGWCC	3 cut(s)	305, 364, 1126
VspI	ATTAAT	1 cut(s)	12
XagI	CCTNNNNNAGG	1 cut(s)	1031
XapI	RAATTY	3 cut(s)	344, 533, 802
XmiI	GTMKAC	1 cut(s)	85
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	2 cut(s)	140, 1062
Zsp2I	ATGCAT	1 cut(s)	647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.