AT1G73110

ATPase family associated with various cellular activities (AAA)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010955
Physical Location & Seq
Reverse (-)
27494121 .. 27496969
2849 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73110.1

Sequence Viewer

Length: 1299 bp
ATGGCGCTTGCAAACATATCTCTGCGTTTCAAGTTTCCACCTTTACAATCTTCTTCTTCTTCTTCTTCCTCGTTCAATGCTACTTTAATCAATACCAGAAAACTCTCTTCAATCGTTTGCTCGAAACCCTCCTCTAATGACGGCGGCAAAGTGGCTAATGACGATGGTGGCGCAAAGCCGCGGAAGAAGTTGTCGGAGCAATCGTCATGGGAAGTTAAAGATTCAGAAGGGAAGGATTATCTCTATAGGCTTGGCGCGGAATCGGATAATGTTAACATAGCCGTTGGGGCACGAAGCGGCATGATCGATGATGTATTCATTGGAGACTTCCTTGGAAAAGATTCTGATATTGTGTTTGATTACCGTCAGAAGGCGACGAGGTCCTTTGAACATCTTCAAGGAGATTATTACATTGCTCCATCGTTTCTGGATAAAGTTGCGGTCCACATTGTGAAGAACTACCTTGCTCCTTCTCTAAATATAAAAATCCCATTGATTTTAGGTATATGGGGAGGTAAAGGACAAGGCAAAACATTTCAGACTGAACTTATATTCAAAACAATGGGAGTTGAACCAGTTATAATGTCTGCAGGAGAGTTGGAATCTGATAGAGCTGGTGAACCGGGGAGACTCATACGTGACCGCTATCGAACAGCTTCACAAGTCATTCAGAATCAAGGAAAGATGAGTGTTCTCATGATCAATGATATTGATGCTGGCCTTGGTAGATTTGGGGAAACGCAAATGACAGTAAACAACCAGATAGTTGTTGGTACCCTGATGAATCTTGCGGATAATCCTACAAGGGTAAGTGTAGGACAAGAATGGAGAGAAGCTGACATGGTAAACAGAGTTCCTCTAATTGTCACAGGGAACGATTTCTCTACACTGTATGCTCCACTGATCCGTGAAGGAAGAATGGAGAAGTTCTACTGGCAGCCAACTCGTGAAGATATCGTAAACATTGTTAGCAGAATGTACGAGAAAGATGGTATATCGCGGAAAGATGTTATAAGCATTGTAGATAAGTTTCCAAATCAAGCACTTGACTTCTATGGAGCTTTGAGGTCACGCACATATGATAGGTCTATCCTCAAGTGGGTAGATGAAGCTGGAGGAATGGAGACTCTAGGGAAAGTTCTTCTCAGACGTAAAAAGACCCAAGAGGTTCCTCAATTCACTGCCCCTGAGCAAACGGTGGAAGCATTGCTGGAATCAGGGTACTCACTCATAAATGAACAGAAACTTATTATGGAAACAAAGCTTTCCAAGGAGTACATGAAGAACATGGACGATTGA

Protein Analysis

432

Amino Acids

48.32

Weight (kDa)

6.81

Isoelectric Point (pI)

39.58

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 169 - 313 2.7e-15 ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical PF21228 316 - 414 1.3e-33 Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010955)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73110 AT1G73110
fragaria_vesca FvH4_6g27970 FvH4_6g27970 FvH4_6g27970 FvH4_6g27970 FvH4_6g27970
malus_domestica MD09G1230800.v1.1
prunus_persica Prupe.3G107000_v2.0.a1 Prupe.3G107000_v2.0.a1
pyrus_communis pycom09g14970
rosa_chinensis RchiOBHm_Chr2g0131521
rosa_laevigata RLG00000019201
rosa_multiflora Rmu_sc0013257.1_g000001
rosa_roxburghii Rroxscaffold_2G00112760
rosa_samantha Rh2AG351100 Rh2BG357700 Rh2CG336700 Rh2DG375500
rosa_wichuraiana Rw2G028500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 581, 1013
Acc65I GGTACC 1 cut(s) 773
AccB1I GGYRCC 1 cut(s) 773
AccII CGCG 3 cut(s) 181, 257, 1000
AciI CCGC 9 cut(s) 144, 179, 181, 257, 297, 440, 643, 791, 1000
AclWI GGATC 1 cut(s) 898
AdeI CACNNNGTG 1 cut(s) 451
AfaI GTAC 4 cut(s) 775, 980, 1223, 1277
AfiI CCNNNNNNNGG 2 cut(s) 370, 1099
AgsI TTSAA 7 cut(s) 31, 76, 111, 389, 398, 556, 572
AluBI AGCT 6 cut(s) 614, 656, 836, 1061, 1112, 1264
AluI AGCT 6 cut(s) 614, 656, 836, 1061, 1112, 1264
Alw26I GTCTC 3 cut(s) 318, 622, 1118
AlwI GGATC 1 cut(s) 898
AoxI GGCC 1 cut(s) 718
ApeKI GCWGC 1 cut(s) 937
Asp700I GAANNNNTTC 4 cut(s) 340, 393, 655, 878
Asp718I GGTACC 1 cut(s) 773
AspLEI GCGC 3 cut(s) 7, 173, 257
AspS9I GGNCC 2 cut(s) 381, 442
AsuC2I CCSGG 1 cut(s) 624
AsuHPI GGTGA 1 cut(s) 629
AvaII GGWCC 2 cut(s) 381, 442
BaeGI GKGCMC 1 cut(s) 292
BanI GGYRCC 1 cut(s) 773
BauI CACGAG 1 cut(s) 945
BbvI GCAGC 1 cut(s) 949
BccI CCATC 3 cut(s) 158, 427, 983
BceAI ACGGC 2 cut(s) 157, 266
BcgI CGANNNNNNTGC 2 cut(s) 926, 960
BclI TGATCA 1 cut(s) 699
BcnI CCSGG 1 cut(s) 624
BcoDI GTCTC 3 cut(s) 318, 622, 1118
BfaI CTAG 1 cut(s) 1130
BfmI CTRYAG 2 cut(s) 244, 588
BfoI RGCGCY 1 cut(s) 8
BglI GCCNNNNNGGC 1 cut(s) 287
BisI GCNGC 4 cut(s) 145, 179, 298, 938
BlsI GCNGC 4 cut(s) 146, 180, 299, 939
Bme1390I CCNGG 1 cut(s) 624
Bme18I GGWCC 2 cut(s) 381, 442
BmgT120I GGNCC 2 cut(s) 381, 442
BmiI GGNNCC 2 cut(s) 775, 1170
BmrFI CCNGG 1 cut(s) 624
BmsI GCATC 1 cut(s) 703
BpmI CTGGAG 1 cut(s) 1134
Bpu10I CCTNAGC 1 cut(s) 1188
BpuEI CTTGAG 1 cut(s) 1079
BpuMI CCSGG 1 cut(s) 624
Bsa29I ATCGAT 1 cut(s) 306
BsaAI YACGTR 1 cut(s) 638
BsaJI CCNNGG 5 cut(s) 179, 331, 623, 721, 1269
BsaXI ACNNNNNCTCC 2 cut(s) 188, 218
Bsc4I CCNNNNNNNGG 2 cut(s) 370, 1099
Bse1I ACTGG 2 cut(s) 575, 938
Bse3DI GCAATG 2 cut(s) 411, 1205
BseCI ATCGAT 1 cut(s) 306
BseDI CCNNGG 5 cut(s) 179, 331, 623, 721, 1269
BseLI CCNNNNNNNGG 2 cut(s) 370, 1099
BseMI GCAATG 2 cut(s) 411, 1205
BseMII CTCAG 2 cut(s) 1159, 1179
BseNI ACTGG 2 cut(s) 575, 938
BseRI GAGGAG 1 cut(s) 121
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 1 cut(s) 949
Bsh1236I CGCG 3 cut(s) 181, 257, 1000
BshFI GGCC 1 cut(s) 720
BshNI GGYRCC 1 cut(s) 773
BshVI ATCGAT 1 cut(s) 306
BsiSI CCGG 1 cut(s) 623
BslI CCNNNNNNNGG 2 cut(s) 370, 1099
BsmAI GTCTC 3 cut(s) 318, 622, 1118
BsnI GGCC 1 cut(s) 720
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 3 cut(s) 303, 699, 903
BspACI CCGC 9 cut(s) 144, 179, 181, 257, 297, 440, 643, 791, 1000
BspANI GGCC 1 cut(s) 720
BspCNI CTCAG 2 cut(s) 1158, 1180
BspDI ATCGAT 1 cut(s) 306
BspFNI CGCG 3 cut(s) 181, 257, 1000
BspHI TCATGA 1 cut(s) 696
BspLI GGNNCC 2 cut(s) 775, 1170
BspMAI CTGCAG 1 cut(s) 592
BspPI GGATC 1 cut(s) 898
BspT107I GGYRCC 1 cut(s) 773
BsrDI GCAATG 2 cut(s) 411, 1205
BsrI ACTGG 2 cut(s) 575, 938
BssECI CCNNGG 5 cut(s) 179, 331, 623, 721, 1269
BssMI GATC 3 cut(s) 303, 699, 903
BssSI CACGAG 1 cut(s) 945
BssT1I CCWWGG 3 cut(s) 331, 721, 1269
Bst2BI CACGAG 1 cut(s) 945
Bst4CI ACNGT 4 cut(s) 365, 751, 891, 1198
Bst6I CTCTTC 1 cut(s) 112
BstBAI YACGTR 1 cut(s) 638
BstC8I GCNNGC 2 cut(s) 9, 718
BstDEI CTNAG 2 cut(s) 1145, 1188
BstDSI CCRYGG 1 cut(s) 179
BstFNI CGCG 3 cut(s) 181, 257, 1000
BstH2I RGCGCY 1 cut(s) 8
BstHHI GCGC 3 cut(s) 7, 173, 257
BstKTI GATC 3 cut(s) 306, 702, 906
BstMAI GTCTC 3 cut(s) 318, 622, 1118
BstMBI GATC 3 cut(s) 303, 699, 903
BstMWI GCNNNNNNNGC 1 cut(s) 287
BstSCI CCNGG 1 cut(s) 622
BstSFI CTRYAG 2 cut(s) 244, 588
BstSLI GKGCMC 1 cut(s) 292
BstUI CGCG 3 cut(s) 181, 257, 1000
BstV1I GCAGC 1 cut(s) 949
Bsu15I ATCGAT 1 cut(s) 306
BsuRI GGCC 1 cut(s) 720
BsuTUI ATCGAT 1 cut(s) 306
BtgI CCRYGG 1 cut(s) 179
BtsI GCAGTG 1 cut(s) 1179
BtsIMutI CAGTG 3 cut(s) 887, 899, 1179
Cac8I GCNNGC 2 cut(s) 9, 718
CciI TCATGA 1 cut(s) 696
CfoI GCGC 3 cut(s) 7, 173, 257
Cfr13I GGNCC 2 cut(s) 381, 442
Cfr42I CCGCGG 1 cut(s) 182
ClaI ATCGAT 1 cut(s) 306
Csp6I GTAC 4 cut(s) 774, 979, 1222, 1276
CviAII CATG 6 cut(s) 207, 301, 697, 841, 1279, 1288
CviQI GTAC 4 cut(s) 774, 979, 1222, 1276
DdeI CTNAG 2 cut(s) 1145, 1188
DpnI GATC 3 cut(s) 305, 701, 905
DpnII GATC 3 cut(s) 303, 699, 903
DraIII CACNNNGTG 1 cut(s) 451
Eam1104I CTCTTC 1 cut(s) 112
EarI CTCTTC 1 cut(s) 112
Eco130I CCWWGG 3 cut(s) 331, 721, 1269
Eco32I GATATC 1 cut(s) 955
Eco47I GGWCC 2 cut(s) 381, 442
EcoO109I RGGNCCY 1 cut(s) 381
EcoRV GATATC 1 cut(s) 955
EcoT14I CCWWGG 3 cut(s) 331, 721, 1269
ErhI CCWWGG 3 cut(s) 331, 721, 1269
FaeI CATG 6 cut(s) 210, 304, 700, 844, 1282, 1291
FatI CATG 6 cut(s) 206, 300, 696, 840, 1278, 1287
FauNDI CATATG 1 cut(s) 1078
FbaI TGATCA 1 cut(s) 699
Fnu4HI GCNGC 4 cut(s) 145, 179, 298, 938
Fsp4HI GCNGC 4 cut(s) 145, 179, 298, 938
FspBI CTAG 1 cut(s) 1130
GlaI GCGC 3 cut(s) 6, 172, 256
GluI GCNGC 4 cut(s) 145, 179, 298, 938
GsuI CTGGAG 1 cut(s) 1134
HaeII RGCGCY 1 cut(s) 8
HaeIII GGCC 1 cut(s) 720
HapII CCGG 1 cut(s) 623
HhaI GCGC 3 cut(s) 7, 173, 257
Hin1II CATG 6 cut(s) 210, 304, 700, 844, 1282, 1291
Hin6I GCGC 3 cut(s) 5, 171, 255
HinP1I GCGC 3 cut(s) 5, 171, 255
HincII GTYRAC 1 cut(s) 274
HindII GTYRAC 1 cut(s) 274
HindIII AAGCTT 1 cut(s) 1262
HinfI GANTC 9 cut(s) 221, 260, 341, 602, 630, 673, 784, 1126, 1214
HpaI GTTAAC 1 cut(s) 274
HpaII CCGG 1 cut(s) 623
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 6 cut(s) 274, 445, 620, 754, 847, 961
Hpy188I TCNGA 9 cut(s) 196, 226, 265, 346, 369, 540, 607, 672, 1148
Hpy188III TCNNGA 3 cut(s) 428, 697, 947
Hpy8I GTNNAC 6 cut(s) 274, 445, 620, 754, 847, 961
Hpy99I CGWCG 1 cut(s) 379
HpyAV CCTTC 5 cut(s) 221, 226, 364, 480, 905
HpyCH4III ACNGT 4 cut(s) 365, 751, 891, 1198
HpyCH4IV ACGT 2 cut(s) 637, 1150
HpyCH4V TGCA 2 cut(s) 11, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 287
HpyF3I CTNAG 2 cut(s) 1145, 1188
HpySE526I ACGT 2 cut(s) 637, 1150
Hsp92II CATG 6 cut(s) 210, 304, 700, 844, 1282, 1291
HspAI GCGC 3 cut(s) 5, 171, 255
KpnI GGTACC 1 cut(s) 777
Ksp22I TGATCA 1 cut(s) 699
KspAI GTTAAC 1 cut(s) 274
KspI CCGCGG 1 cut(s) 182
Kzo9I GATC 3 cut(s) 303, 699, 903
LmnI GCTCC 5 cut(s) 196, 421, 472, 901, 1058
Lsp1109I GCAGC 1 cut(s) 949
LweI GCATC 1 cut(s) 703
MaeI CTAG 1 cut(s) 1130
MaeII ACGT 2 cut(s) 637, 1150
MaeIII GTNAC 3 cut(s) 638, 865, 1068
MalI GATC 3 cut(s) 305, 701, 905
MboI GATC 3 cut(s) 303, 699, 903
MhlI GDGCHC 1 cut(s) 292
MluCI AATT 2 cut(s) 861, 1175
MlyI GAGTC 2 cut(s) 624, 1120
MmeI TCCRAC 2 cut(s) 174, 579
MroXI GAANNNNTTC 4 cut(s) 340, 393, 655, 878
MseI TTAA 3 cut(s) 86, 216, 273
MspA1I CMGCKG 1 cut(s) 181
MspI CCGG 1 cut(s) 623
MspR9I CCNGG 1 cut(s) 624
MvnI CGCG 3 cut(s) 181, 257, 1000
MwoI GCNNNNNNNGC 1 cut(s) 287
NciI CCSGG 1 cut(s) 624
NdeI CATATG 1 cut(s) 1078
NdeII GATC 3 cut(s) 303, 699, 903
NlaIII CATG 6 cut(s) 210, 304, 700, 844, 1282, 1291
NlaIV GGNNCC 2 cut(s) 775, 1170
NmuCI GTSAC 3 cut(s) 638, 865, 1068
PagI TCATGA 1 cut(s) 696
PcsI WCGNNNNNNNCGW 1 cut(s) 200
PdmI GAANNNNTTC 4 cut(s) 340, 393, 655, 878
PfeI GAWTC 7 cut(s) 221, 260, 341, 602, 673, 784, 1214
PflFI GACNNNGTC 1 cut(s) 379
PkrI GCNGC 4 cut(s) 146, 180, 299, 939
PleI GAGTC 2 cut(s) 624, 1120
PpsI GAGTC 2 cut(s) 624, 1120
Ppu21I YACGTR 1 cut(s) 638
PpuMI RGGWCCY 1 cut(s) 381
PsiI TTATAA 2 cut(s) 581, 1013
Psp5II RGGWCCY 1 cut(s) 381
PspN4I GGNNCC 2 cut(s) 775, 1170
PspPI GGNCC 2 cut(s) 381, 442
PspPPI RGGWCCY 1 cut(s) 381
PsrI GAACNNNNNNTAC 2 cut(s) 837, 869
PstI CTGCAG 1 cut(s) 592
PsyI GACNNNGTC 1 cut(s) 379
RsaI GTAC 4 cut(s) 775, 980, 1223, 1277
RsaNI GTAC 4 cut(s) 774, 979, 1222, 1276
SacII CCGCGG 1 cut(s) 182
SaqAI TTAA 3 cut(s) 86, 216, 273
SatI GCNGC 4 cut(s) 145, 179, 298, 938
Sau3AI GATC 3 cut(s) 303, 699, 903
Sau96I GGNCC 2 cut(s) 381, 442
SchI GAGTC 2 cut(s) 624, 1120
ScrFI CCNGG 1 cut(s) 624
SduI GDGCHC 1 cut(s) 292
SfaNI GCATC 1 cut(s) 703
SfcI CTRYAG 2 cut(s) 244, 588
Sfr303I CCGCGG 1 cut(s) 182
SgrBI CCGCGG 1 cut(s) 182
SinI GGWCC 2 cut(s) 381, 442
SmlI CTYRAG 1 cut(s) 1094
SmoI CTYRAG 1 cut(s) 1094
Sse9I AATT 2 cut(s) 861, 1175
SsiI CCGC 9 cut(s) 144, 179, 181, 257, 297, 440, 643, 791, 1000
SspMI CTAG 1 cut(s) 1130
StyD4I CCNGG 1 cut(s) 622
StyI CCWWGG 3 cut(s) 331, 721, 1269
TaaI ACNGT 4 cut(s) 365, 751, 891, 1198
TaiI ACGT 2 cut(s) 640, 1153
TaqI TCGA 3 cut(s) 122, 306, 649
TasI AATT 2 cut(s) 861, 1175
TatI WGTACW 1 cut(s) 1275
TauI GCSGC 3 cut(s) 147, 181, 300
TfiI GAWTC 7 cut(s) 221, 260, 341, 602, 673, 784, 1214
Tru1I TTAA 3 cut(s) 86, 216, 273
Tru9I TTAA 3 cut(s) 86, 216, 273
TscAI CASTG 3 cut(s) 894, 906, 1186
TseFI GTSAC 3 cut(s) 638, 865, 1068
TseI GCWGC 1 cut(s) 937
Tsp45I GTSAC 3 cut(s) 638, 865, 1068
TspDTI ATGAA 5 cut(s) 307, 797, 1122, 1251, 1295
TspGWI ACGGA 1 cut(s) 896
TspRI CASTG 3 cut(s) 894, 906, 1186
Tth111I GACNNNGTC 1 cut(s) 379
VpaK11BI GGWCC 2 cut(s) 381, 442
XcmI CCANNNNNNNNNTGG 1 cut(s) 767
XmnI GAANNNNTTC 4 cut(s) 340, 393, 655, 878
XspI CTAG 1 cut(s) 1130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.