Rh2CG336700

Ribulose bisphosphate carboxylase oxygenase activase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
Physical Location & Seq
Forward (+)
44524480 .. 44531965
7486 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG336700.1

Sequence Viewer

Length: 735 bp
ATGAAACTGGGTGAAAGGTTATGTATTATCTGCAATGATTCAGTATGCCATATGGCGAAGAACTACCTTGCTCATATTCTCAATACGAAAGTTCCTTTGATTCTAGGTATTTGGGGAGGAAAAGGCCAAGGAAAGTCTTTTCAGACTGAACTTGTATTTCAAGCTATGGGAGTTGAACCTGTAGTTATGTCTGCTGGGGAATTAGAATCAGAAAGAGCTGGGGAACCAGGGAAATTGATACGGGAACGCTATAGAACAGCTTCTCAAGTTGTCCAGAACCAAGGCAAGATGAGCTGTTTGATGATCAATGACATTGATGCTGGGCTCGGTAGATTTGGAAACACTCAGATGACAGTCAATAATCAAATTGTTGTTGGAACTTTGATGAATCTATGTGATAATCCTACAAGAGTTAGTATTGGACAAGACTGGCGAGAATCAGATATCACAAACAGAGTTCCTATCATTGTTACAGGAAATGATTTTTCAAAAATTTATGCTCCCTTAATCCGTGATGGAAGGATGGAAAAGTTTTATTGGCAACCTAATCGTGAGGATATCATTAACATTGTTAACAGAATGTATGAGAAAGATGGCATATCCAGGGATGAAGTTGTAAGTATAGTTGACACTTTTCCTAACCAAGCACTGGATTTCTATGGAGCTCTACGGTCTCGAACATATGATCGGTCAATTTCTAAGGTATATGATATTCTGATCGTCTTGACAAAATAA

Protein Analysis

244

Amino Acids

27.53

Weight (kDa)

7.59

Isoelectric Point (pI)

34.09

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AAA PF00004 37 - 181 2.2e-15 ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical PF21228 184 - 234 1.9e-20 Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0010955)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 649
AcsI RAATTY 1 cut(s) 492
AfiI CCNNNNNNNGG 1 cut(s) 649
AgsI TTSAA 3 cut(s) 161, 176, 489
AjnI CCWGG 2 cut(s) 226, 602
AluBI AGCT 5 cut(s) 164, 218, 260, 294, 665
AluI AGCT 5 cut(s) 164, 218, 260, 294, 665
Alw21I GWGCWC 1 cut(s) 667
Alw26I GTCTC 1 cut(s) 678
AoxI GGCC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 492
Asp700I GAANNNNTTC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 23
BanII GRGCYC 2 cut(s) 327, 667
Bbv12I GWGCWC 1 cut(s) 667
BccI CCATC 3 cut(s) 509, 517, 587
BcgI CGANNNNNNTGC 2 cut(s) 530, 564
BciT130I CCWGG 2 cut(s) 228, 604
BclI TGATCA 1 cut(s) 303
BcoDI GTCTC 1 cut(s) 678
BfaI CTAG 1 cut(s) 104
BfmI CTRYAG 2 cut(s) 180, 250
Bme1390I CCNGG 2 cut(s) 228, 604
BmiI GGNNCC 1 cut(s) 225
BmrFI CCNGG 2 cut(s) 228, 604
BmrI ACTGGG 1 cut(s) 17
BmsI GCATC 1 cut(s) 307
BmuI ACTGGG 1 cut(s) 17
BpuEI CTTGAG 1 cut(s) 249
BsaI GGTCTC 1 cut(s) 678
BsaJI CCNNGG 4 cut(s) 127, 227, 280, 603
Bsc4I CCNNNNNNNGG 1 cut(s) 649
Bse1I ACTGG 3 cut(s) 12, 434, 654
Bse3DI GCAATG 1 cut(s) 40
BseBI CCWGG 2 cut(s) 228, 604
BseDI CCNNGG 4 cut(s) 127, 227, 280, 603
BseGI GGATG 2 cut(s) 528, 613
BseLI CCNNNNNNNGG 1 cut(s) 649
BseMI GCAATG 1 cut(s) 40
BseMII CTCAG 1 cut(s) 359
BseNI ACTGG 3 cut(s) 12, 434, 654
BseYI CCCAGC 3 cut(s) 194, 218, 320
BshFI GGCC 1 cut(s) 126
BsiHKAI GWGCWC 1 cut(s) 667
BslI CCNNNNNNNGG 1 cut(s) 649
BsmAI GTCTC 1 cut(s) 678
BsnI GGCC 1 cut(s) 126
Bso31I GGTCTC 1 cut(s) 678
Bsp1286I GDGCHC 2 cut(s) 327, 667
Bsp143I GATC 3 cut(s) 303, 685, 717
BspANI GGCC 1 cut(s) 126
BspCNI CTCAG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 225
BspTNI GGTCTC 1 cut(s) 678
BsrDI GCAATG 1 cut(s) 40
BsrI ACTGG 3 cut(s) 12, 434, 654
BssECI CCNNGG 4 cut(s) 127, 227, 280, 603
BssMI GATC 3 cut(s) 303, 685, 717
BssT1I CCWWGG 2 cut(s) 127, 280
Bst2UI CCWGG 2 cut(s) 228, 604
Bst4CI ACNGT 2 cut(s) 355, 672
BstDEI CTNAG 2 cut(s) 345, 699
BstF5I GGATG 2 cut(s) 528, 613
BstKTI GATC 3 cut(s) 306, 688, 720
BstMAI GTCTC 1 cut(s) 678
BstMBI GATC 3 cut(s) 303, 685, 717
BstMWI GCNNNNNNNGC 1 cut(s) 291
BstNI CCWGG 2 cut(s) 228, 604
BstSCI CCNGG 2 cut(s) 226, 602
BstSFI CTRYAG 2 cut(s) 180, 250
BsuRI GGCC 1 cut(s) 126
BtsCI GGATG 2 cut(s) 528, 613
BtsIMutI CAGTG 1 cut(s) 647
CviJI RGCY 7 cut(s) 126, 164, 218, 260, 294, 325, 665
CviKI_1 RGCY 7 cut(s) 126, 164, 218, 260, 294, 325, 665
DdeI CTNAG 2 cut(s) 345, 699
DpnI GATC 3 cut(s) 305, 687, 719
DpnII GATC 3 cut(s) 303, 685, 717
Ecl136II GAGCTC 1 cut(s) 665
Eco130I CCWWGG 2 cut(s) 127, 280
Eco24I GRGCYC 2 cut(s) 327, 667
Eco31I GGTCTC 1 cut(s) 678
Eco32I GATATC 2 cut(s) 445, 559
Eco53kI GAGCTC 1 cut(s) 665
EcoICRI GAGCTC 1 cut(s) 665
EcoRII CCWGG 2 cut(s) 226, 602
EcoRV GATATC 2 cut(s) 445, 559
EcoT14I CCWWGG 2 cut(s) 127, 280
EcoT38I GRGCYC 2 cut(s) 327, 667
ErhI CCWWGG 2 cut(s) 127, 280
FauNDI CATATG 2 cut(s) 51, 682
FbaI TGATCA 1 cut(s) 303
FokI GGATG 2 cut(s) 535, 620
FriOI GRGCYC 2 cut(s) 327, 667
FspBI CTAG 1 cut(s) 104
GsaI CCCAGC 3 cut(s) 198, 222, 324
HaeIII GGCC 1 cut(s) 126
HincII GTYRAC 2 cut(s) 574, 628
HindII GTYRAC 2 cut(s) 574, 628
HinfI GANTC 5 cut(s) 38, 100, 206, 388, 437
HpaI GTTAAC 1 cut(s) 574
HphI GGTGA 1 cut(s) 23
Hpy166II GTNNAC 2 cut(s) 574, 628
Hpy188I TCNGA 5 cut(s) 144, 211, 348, 442, 717
Hpy188III TCNNGA 4 cut(s) 274, 551, 675, 724
Hpy8I GTNNAC 2 cut(s) 574, 628
HpyAV CCTTC 1 cut(s) 513
HpyCH4III ACNGT 2 cut(s) 355, 672
HpyCH4V TGCA 1 cut(s) 33
HpyF10VI GCNNNNNNNGC 1 cut(s) 291
HpyF3I CTNAG 2 cut(s) 345, 699
Ksp22I TGATCA 1 cut(s) 303
KspAI GTTAAC 1 cut(s) 574
Kzo9I GATC 3 cut(s) 303, 685, 717
LmnI GCTCC 2 cut(s) 505, 662
LweI GCATC 1 cut(s) 307
MaeI CTAG 1 cut(s) 104
MaeIII GTNAC 1 cut(s) 469
MalI GATC 3 cut(s) 305, 687, 719
MboI GATC 3 cut(s) 303, 685, 717
MboII GAAGA 1 cut(s) 70
MhlI GDGCHC 2 cut(s) 327, 667
MluCI AATT 5 cut(s) 200, 233, 366, 492, 693
MmeI TCCRAC 1 cut(s) 355
MnlI CCTC 2 cut(s) 110, 547
MroXI GAANNNNTTC 1 cut(s) 259
MseI TTAA 3 cut(s) 506, 564, 573
MslI CAYNNNNRTG 1 cut(s) 347
MspR9I CCNGG 2 cut(s) 228, 604
MvaI CCWGG 2 cut(s) 228, 604
MwoI GCNNNNNNNGC 1 cut(s) 291
NdeI CATATG 2 cut(s) 51, 682
NdeII GATC 3 cut(s) 303, 685, 717
NlaIV GGNNCC 1 cut(s) 225
PdmI GAANNNNTTC 1 cut(s) 259
PfeI GAWTC 5 cut(s) 38, 100, 206, 388, 437
PflMI CCANNNNNTGG 1 cut(s) 649
Psp124BI GAGCTC 1 cut(s) 667
Psp6I CCWGG 2 cut(s) 226, 602
PspFI CCCAGC 3 cut(s) 194, 218, 320
PspGI CCWGG 2 cut(s) 226, 602
PspN4I GGNNCC 1 cut(s) 225
RseI CAYNNNNRTG 1 cut(s) 347
SacI GAGCTC 1 cut(s) 667
SaqAI TTAA 3 cut(s) 506, 564, 573
Sau3AI GATC 3 cut(s) 303, 685, 717
ScrFI CCNGG 2 cut(s) 228, 604
SduI GDGCHC 2 cut(s) 327, 667
SfaNI GCATC 1 cut(s) 307
SfcI CTRYAG 2 cut(s) 180, 250
SmiMI CAYNNNNRTG 1 cut(s) 347
SmlI CTYRAG 1 cut(s) 264
SmoI CTYRAG 1 cut(s) 264
Sse9I AATT 5 cut(s) 200, 233, 366, 492, 693
SspMI CTAG 1 cut(s) 104
SstI GAGCTC 1 cut(s) 667
StyD4I CCNGG 2 cut(s) 226, 602
StyI CCWWGG 2 cut(s) 127, 280
TaaI ACNGT 2 cut(s) 355, 672
TaqI TCGA 1 cut(s) 676
TaqII GACCGA 1 cut(s) 678
TasI AATT 5 cut(s) 200, 233, 366, 492, 693
TfiI GAWTC 5 cut(s) 38, 100, 206, 388, 437
Tru1I TTAA 3 cut(s) 506, 564, 573
Tru9I TTAA 3 cut(s) 506, 564, 573
TscAI CASTG 1 cut(s) 654
TspDTI ATGAA 3 cut(s) 17, 401, 624
TspGWI ACGGA 1 cut(s) 500
TspRI CASTG 1 cut(s) 654
Van91I CCANNNNNTGG 1 cut(s) 649
XapI RAATTY 1 cut(s) 492
XmnI GAANNNNTTC 1 cut(s) 259
XspI CTAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.