Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0010955

Physical Location & Seq

Genomic Coordinates Forward (+)

45619458 .. 45626152

Gene Structure 6695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G028500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

ATGACTCTCTGCAACTCATTTCTCCTCAAAACCCCAATCTTCCCTCACTCCCATTTCTTCACTCACCAATTTCCCACCAAACCCATCTTCTCCCTTTCCTGCTCCGCAACCCCCTCCTCCTCCGTGCCTGACCCCAAAACCAACGCCAGCGACGGCAACGCCGCCAATGGCGGCGGTGAGCCGAAGAGCAAGAGGCTTTCGGACCAGTCCTCGTGGGAGGCCAAGGACTCTGTGGGCGAGGACTACTTATACAGGCTCGGCAAAGAGGCCGACAACATGAACATCGCCGTCGGAGCCCGGGCCGGCGTTGTCGATGACCTTTTCGTCGGGAAATTCCTCGGCCGTGACTCCGATATCGTTTTTGATTATCGCCAGAAGGTCACCAGGTCCTTCCAGTACCTGCAAGGCGATTATTACATTGCGCCTCTCTTCATGGATAAAGTCGTATGCCATATGACGAAGAACTACCTTGCTCATATTCTCAATACGAAAGTTCCTTTGATTCTAGGTATTTGGGGAGGAAAAGGCCAAGGAAAGTCATTTCAGACTGAACTTGTATTTCAAGCTATGGGAGTTGAACCTGTAGTTATGTCTGCTGGGGAATTAGAATCTTTGCAATGGGAACCAGGGAAATTGATACGGGAACGCTATAGAACAGCTTCTCAAGTTGTCCAGAACCAAGGCAAGATGAGCTGTTTGATGATCAATGACATTGATGCTGGGCTCGGTAGATTTGGAAACACTCAGATGACAGTCAATAATCAAATTGTTGTTGGAACTTTGATGAATCTATGTGATAATCCTACAAGAGTTAGTATTGGACAAGACTGGCGAGAATCAGATATCACAAACAGAGTTCCTATCATTGTTACAGGAAATGATTTTTCAAAAATTTATGCTCCCTTAATCCGTGATGGAAGGATGGAAAAGTTTTATTGGCAACCTAACCGTGAGGATATCATTAACATTGTTAACAGAATGTATGAGAAAGATGGCATATCCAGGGATGAAGTTGTAAGTATAGTTGACACTTTTCCTAATCAAGCACTGGATTTCTATGGAGCTCTACGTTCTCGAACATATGATCGGTCAATTTCTAAGTGGATTGATGATATTGGCGGTGTTGAAAGTCTTGGAAACAAACTTGTGAAGCGGAGAAAGGATGACAATCTTCCCGTATATACTCCTCCAAAGCAAACGATGGAGGCTTTGCTTGAATCCGGGTATTCTCTGCTGAAAGAACAGCAGTTGATAATGGAGACCAAACTTTCAAAGGAGTACATGAAGAACATGGATGATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046863 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

AAA

Protein Analysis

433

Amino Acids

48.84

Weight (kDa)

6.28

Isoelectric Point (pI)

35.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AAA	PF00004	171 - 314	6.8e-13	ATPase family associated with various cellular activities (AAA)
RuBisCO_activase_AAA_helical	PF21228	317 - 415	1.9e-34	Ribulose bisphosphate carboxylase/oxygenase activase, AAA, helical

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73110 AT1G73110
fragaria_vesca	FvH4_6g27970 FvH4_6g27970 FvH4_6g27970 FvH4_6g27970 FvH4_6g27970
malus_domestica	MD09G1230800.v1.1
prunus_persica	Prupe.3G107000_v2.0.a1 Prupe.3G107000_v2.0.a1
pyrus_communis	pycom09g14970
rosa_chinensis	RchiOBHm_Chr2g0131521
rosa_laevigata	RLG00000019201
rosa_multiflora	Rmu_sc0013257.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112760
rosa_samantha	Rh2AG351100 Rh2BG357700 Rh2CG336700 Rh2DG375500
rosa_wichuraiana	Rw2G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	323
Acc36I	ACCTGC	1 cut(s)	408
AciI	CCGC	6 cut(s)	105, 162, 171, 174, 1119, 1153
AcoI	YGGCCR	1 cut(s)	340
AcsI	RAATTY	2 cut(s)	332, 891
AfaI	GTAC	2 cut(s)	398, 1280
AgsI	TTSAA	6 cut(s)	563, 578, 888, 1127, 1217, 1272
AjnI	CCWGG	3 cut(s)	383, 625, 1001
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	566, 659, 693, 1064
AluI	AGCT	4 cut(s)	566, 659, 693, 1064
Alw21I	GWGCWC	1 cut(s)	1066
Alw26I	GTCTC	1 cut(s)	1253
AlwNI	CAGNNNCTG	1 cut(s)	400
Ama87I	CYCGRG	1 cut(s)	297
AoxI	GGCC	5 cut(s)	219, 267, 300, 340, 526
ApoI	RAATTY	2 cut(s)	332, 891
Asp700I	GAANNNNTTC	1 cut(s)	658
AspLEI	GCGC	1 cut(s)	424
AspS9I	GGNCC	3 cut(s)	202, 300, 387
AsuC2I	CCSGG	3 cut(s)	298, 299, 1222
AsuHPI	GGTGA	3 cut(s)	56, 188, 373
AvaI	CYCGRG	1 cut(s)	297
AvaII	GGWCC	2 cut(s)	202, 387
BanII	GRGCYC	3 cut(s)	298, 726, 1066
BauI	CACGAG	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	1066
BccI	CCATC	5 cut(s)	92, 908, 916, 986, 1195
BceAI	ACGGC	3 cut(s)	169, 272, 327
BciT130I	CCWGG	3 cut(s)	385, 627, 1003
BclI	TGATCA	1 cut(s)	702
BcnI	CCSGG	3 cut(s)	298, 299, 1222
BcoDI	GTCTC	1 cut(s)	1253
BfaI	CTAG	1 cut(s)	506
BfmI	CTRYAG	2 cut(s)	582, 649
BfuAI	ACCTGC	1 cut(s)	408
BisI	GCNGC	2 cut(s)	162, 172
BlsI	GCNGC	2 cut(s)	163, 173
Bme1390I	CCNGG	6 cut(s)	298, 299, 385, 627, 1003, 1222
Bme18I	GGWCC	2 cut(s)	202, 387
BmeT110I	CYCGRG	1 cut(s)	297
BmgT120I	GGNCC	3 cut(s)	202, 300, 387
BmiI	GGNNCC	2 cut(s)	295, 624
BmrFI	CCNGG	6 cut(s)	298, 299, 385, 627, 1003, 1222
BmsI	GCATC	1 cut(s)	706
BpuEI	CTTGAG	1 cut(s)	648
BpuMI	CCSGG	3 cut(s)	298, 299, 1222
BsaBI	GATNNNNATC	1 cut(s)	1167
BsaI	GGTCTC	1 cut(s)	1253
BsaJI	CCNNGG	7 cut(s)	222, 297, 337, 529, 626, 679, 1002
Bse118I	RCCGGY	1 cut(s)	302
Bse1I	ACTGG	4 cut(s)	205, 394, 833, 1053
Bse3DI	GCAATG	2 cut(s)	417, 623
Bse8I	GATNNNNATC	1 cut(s)	1167
BseBI	CCWGG	3 cut(s)	385, 627, 1003
BseDI	CCNNGG	7 cut(s)	222, 297, 337, 529, 626, 679, 1002
BseGI	GGATG	4 cut(s)	927, 1012, 1168, 1300
BseJI	GATNNNNATC	1 cut(s)	1167
BseMI	GCAATG	2 cut(s)	417, 623
BseMII	CTCAG	1 cut(s)	758
BseNI	ACTGG	4 cut(s)	205, 394, 833, 1053
BseRI	GAGGAG	4 cut(s)	14, 106, 109, 1176
BseX3I	CGGCCG	1 cut(s)	340
BseYI	CCCAGC	2 cut(s)	596, 719
Bsh1285I	CGRYCG	1 cut(s)	343
BshFI	GGCC	5 cut(s)	221, 269, 302, 342, 528
BsiEI	CGRYCG	1 cut(s)	343
BsiHKAI	GWGCWC	1 cut(s)	1066
BsiHKCI	CYCGRG	1 cut(s)	297
BsiSI	CCGG	3 cut(s)	298, 303, 1221
BsmAI	GTCTC	1 cut(s)	1253
BsnI	GGCC	5 cut(s)	221, 269, 302, 342, 528
Bso31I	GGTCTC	1 cut(s)	1253
BsoBI	CYCGRG	1 cut(s)	297
Bsp1286I	GDGCHC	3 cut(s)	298, 726, 1066
Bsp143I	GATC	2 cut(s)	702, 1084
BspACI	CCGC	6 cut(s)	105, 162, 171, 174, 1119, 1153
BspANI	GGCC	5 cut(s)	221, 269, 302, 342, 528
BspCNI	CTCAG	1 cut(s)	757
BspLI	GGNNCC	2 cut(s)	295, 624
BspMI	ACCTGC	1 cut(s)	408
BspQI	GCTCTTC	1 cut(s)	179
BspTNI	GGTCTC	1 cut(s)	1253
BsrDI	GCAATG	2 cut(s)	417, 623
BsrFI	RCCGGY	1 cut(s)	302
BsrI	ACTGG	4 cut(s)	205, 394, 833, 1053
BssAI	RCCGGY	1 cut(s)	302
BssECI	CCNNGG	7 cut(s)	222, 297, 337, 529, 626, 679, 1002
BssMI	GATC	2 cut(s)	702, 1084
BssSI	CACGAG	1 cut(s)	211
BssT1I	CCWWGG	3 cut(s)	222, 529, 679
Bst2BI	CACGAG	1 cut(s)	211
Bst2UI	CCWGG	3 cut(s)	385, 627, 1003
Bst4CI	ACNGT	2 cut(s)	754, 950
Bst6I	CTCTTC	2 cut(s)	179, 434
BstC8I	GCNNGC	2 cut(s)	148, 304
BstDEI	CTNAG	2 cut(s)	744, 1098
BstEII	GGTNACC	1 cut(s)	379
BstF5I	GGATG	4 cut(s)	927, 1012, 1168, 1300
BstHHI	GCGC	1 cut(s)	424
BstKTI	GATC	2 cut(s)	705, 1087
BstMAI	GTCTC	1 cut(s)	1253
BstMBI	GATC	2 cut(s)	702, 1084
BstMCI	CGRYCG	1 cut(s)	343
BstMWI	GCNNNNNNNGC	2 cut(s)	293, 690
BstNI	CCWGG	3 cut(s)	385, 627, 1003
BstPI	GGTNACC	1 cut(s)	379
BstSCI	CCNGG	6 cut(s)	296, 297, 383, 625, 1001, 1220
BstSFI	CTRYAG	2 cut(s)	582, 649
BstZI	CGGCCG	1 cut(s)	340
BsuRI	GGCC	5 cut(s)	221, 269, 302, 342, 528
BtgZI	GCGATG	1 cut(s)	268
BtsCI	GGATG	4 cut(s)	927, 1012, 1168, 1300
BtsIMutI	CAGTG	1 cut(s)	1046
BveI	ACCTGC	1 cut(s)	408
Cac8I	GCNNGC	2 cut(s)	148, 304
CaiI	CAGNNNCTG	1 cut(s)	400
CfoI	GCGC	1 cut(s)	424
Cfr10I	RCCGGY	1 cut(s)	302
Cfr13I	GGNCC	3 cut(s)	202, 300, 387
Cfr9I	CCCGGG	1 cut(s)	297
CsiI	ACCWGGT	1 cut(s)	383
Csp6I	GTAC	2 cut(s)	397, 1279
CviAII	CATG	4 cut(s)	277, 433, 1282, 1291
CviQI	GTAC	2 cut(s)	397, 1279
DdeI	CTNAG	2 cut(s)	744, 1098
DpnI	GATC	2 cut(s)	704, 1086
DpnII	GATC	2 cut(s)	702, 1084
DrdI	GACNNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	340
EagI	CGGCCG	1 cut(s)	340
Eam1104I	CTCTTC	2 cut(s)	179, 434
EarI	CTCTTC	2 cut(s)	179, 434
Ecl136II	GAGCTC	1 cut(s)	1064
EclXI	CGGCCG	1 cut(s)	340
Eco130I	CCWWGG	3 cut(s)	222, 529, 679
Eco24I	GRGCYC	3 cut(s)	298, 726, 1066
Eco31I	GGTCTC	1 cut(s)	1253
Eco32I	GATATC	3 cut(s)	355, 844, 958
Eco47I	GGWCC	2 cut(s)	202, 387
Eco52I	CGGCCG	1 cut(s)	340
Eco53kI	GAGCTC	1 cut(s)	1064
Eco88I	CYCGRG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	379
EcoICRI	GAGCTC	1 cut(s)	1064
EcoO109I	RGGNCCY	1 cut(s)	387
EcoO65I	GGTNACC	1 cut(s)	379
EcoRII	CCWGG	3 cut(s)	383, 625, 1001
EcoRV	GATATC	3 cut(s)	355, 844, 958
EcoT14I	CCWWGG	3 cut(s)	222, 529, 679
EcoT38I	GRGCYC	3 cut(s)	298, 726, 1066
ErhI	CCWWGG	3 cut(s)	222, 529, 679
FaeI	CATG	4 cut(s)	280, 436, 1285, 1294
FatI	CATG	4 cut(s)	276, 432, 1281, 1290
FauNDI	CATATG	2 cut(s)	453, 1081
FbaI	TGATCA	1 cut(s)	702
Fnu4HI	GCNGC	2 cut(s)	162, 172
FokI	GGATG	3 cut(s)	934, 1019, 1175
FriOI	GRGCYC	3 cut(s)	298, 726, 1066
Fsp4HI	GCNGC	2 cut(s)	162, 172
FspBI	CTAG	1 cut(s)	506
GlaI	GCGC	1 cut(s)	423
GluI	GCNGC	2 cut(s)	162, 172
GsaI	CCCAGC	2 cut(s)	600, 723
HaeIII	GGCC	5 cut(s)	221, 269, 302, 342, 528
HapII	CCGG	3 cut(s)	298, 303, 1221
HhaI	GCGC	1 cut(s)	424
Hin1II	CATG	4 cut(s)	280, 436, 1285, 1294
Hin6I	GCGC	1 cut(s)	422
HinP1I	GCGC	1 cut(s)	422
HincII	GTYRAC	2 cut(s)	973, 1027
HindII	GTYRAC	2 cut(s)	973, 1027
HinfI	GANTC	8 cut(s)	4, 227, 347, 502, 608, 787, 836, 1217
HpaI	GTTAAC	1 cut(s)	973
HpaII	CCGG	3 cut(s)	298, 303, 1221
HphI	GGTGA	3 cut(s)	56, 188, 373
Hpy166II	GTNNAC	2 cut(s)	973, 1027
Hpy188I	TCNGA	6 cut(s)	202, 293, 352, 546, 747, 841
Hpy188III	TCNNGA	3 cut(s)	328, 673, 1074
Hpy8I	GTNNAC	2 cut(s)	973, 1027
Hpy99I	CGWCG	3 cut(s)	155, 293, 329
HpyAV	CCTTC	3 cut(s)	370, 400, 912
HpyCH4III	ACNGT	2 cut(s)	754, 950
HpyCH4IV	ACGT	1 cut(s)	1069
HpyCH4V	TGCA	3 cut(s)	12, 403, 616
HpyF10VI	GCNNNNNNNGC	2 cut(s)	293, 690
HpyF3I	CTNAG	2 cut(s)	744, 1098
HpySE526I	ACGT	1 cut(s)	1069
Hsp92II	CATG	4 cut(s)	280, 436, 1285, 1294
HspAI	GCGC	1 cut(s)	422
KroI	GCCGGC	1 cut(s)	302
KroNI	GCCGGC	1 cut(s)	304
Ksp22I	TGATCA	1 cut(s)	702
KspAI	GTTAAC	1 cut(s)	973
Kzo9I	GATC	2 cut(s)	702, 1084
LguI	GCTCTTC	1 cut(s)	179
LmnI	GCTCC	4 cut(s)	107, 293, 904, 1061
LweI	GCATC	1 cut(s)	706
MabI	ACCWGGT	1 cut(s)	383
MaeI	CTAG	1 cut(s)	506
MaeII	ACGT	1 cut(s)	1069
MaeIII	GTNAC	3 cut(s)	344, 379, 868
MalI	GATC	2 cut(s)	704, 1086
MboI	GATC	2 cut(s)	702, 1084
MboII	GAAGA	8 cut(s)	31, 49, 79, 196, 421, 472, 1163, 1297
MhlI	GDGCHC	3 cut(s)	298, 726, 1066
MluCI	AATT	7 cut(s)	68, 332, 602, 632, 765, 891, 1092
MlyI	GAGTC	2 cut(s)	221, 341
MmeI	TCCRAC	2 cut(s)	271, 754
MroNI	GCCGGC	1 cut(s)	302
MroXI	GAANNNNTTC	1 cut(s)	658
MseI	TTAA	3 cut(s)	905, 963, 972
MslI	CAYNNNNRTG	1 cut(s)	746
MspI	CCGG	3 cut(s)	298, 303, 1221
MspR9I	CCNGG	6 cut(s)	298, 299, 385, 627, 1003, 1222
MvaI	CCWGG	3 cut(s)	385, 627, 1003
MwoI	GCNNNNNNNGC	2 cut(s)	293, 690
NaeI	GCCGGC	1 cut(s)	304
NciI	CCSGG	3 cut(s)	298, 299, 1222
NdeI	CATATG	2 cut(s)	453, 1081
NdeII	GATC	2 cut(s)	702, 1084
NgoMIV	GCCGGC	1 cut(s)	302
NlaIII	CATG	4 cut(s)	280, 436, 1285, 1294
NlaIV	GGNNCC	2 cut(s)	295, 624
NmeAIII	GCCGAG	2 cut(s)	237, 318
NmuCI	GTSAC	2 cut(s)	344, 379
PciSI	GCTCTTC	1 cut(s)	179
PdiI	GCCGGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	658
PfeI	GAWTC	5 cut(s)	502, 608, 787, 836, 1217
PkrI	GCNGC	2 cut(s)	163, 173
PleI	GAGTC	2 cut(s)	221, 341
PpsI	GAGTC	2 cut(s)	221, 341
PpuMI	RGGWCCY	1 cut(s)	387
Psp124BI	GAGCTC	1 cut(s)	1066
Psp5II	RGGWCCY	1 cut(s)	387
Psp6I	CCWGG	3 cut(s)	383, 625, 1001
PspEI	GGTNACC	1 cut(s)	379
PspFI	CCCAGC	2 cut(s)	596, 719
PspGI	CCWGG	3 cut(s)	383, 625, 1001
PspN4I	GGNNCC	2 cut(s)	295, 624
PspPI	GGNCC	3 cut(s)	202, 300, 387
PspPPI	RGGWCCY	1 cut(s)	387
PstNI	CAGNNNCTG	1 cut(s)	400
RsaI	GTAC	2 cut(s)	398, 1280
RsaNI	GTAC	2 cut(s)	397, 1279
RseI	CAYNNNNRTG	1 cut(s)	746
SacI	GAGCTC	1 cut(s)	1066
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	3 cut(s)	905, 963, 972
SatI	GCNGC	2 cut(s)	162, 172
Sau3AI	GATC	2 cut(s)	702, 1084
Sau96I	GGNCC	3 cut(s)	202, 300, 387
SchI	GAGTC	2 cut(s)	221, 341
ScrFI	CCNGG	6 cut(s)	298, 299, 385, 627, 1003, 1222
SduI	GDGCHC	3 cut(s)	298, 726, 1066
SexAI	ACCWGGT	1 cut(s)	383
SfaNI	GCATC	1 cut(s)	706
SfcI	CTRYAG	2 cut(s)	582, 649
SinI	GGWCC	2 cut(s)	202, 387
SmaI	CCCGGG	1 cut(s)	299
SmiMI	CAYNNNNRTG	1 cut(s)	746
SmlI	CTYRAG	1 cut(s)	663
SmoI	CTYRAG	1 cut(s)	663
SrfI	GCCCGGGC	1 cut(s)	299
Sse9I	AATT	7 cut(s)	68, 332, 602, 632, 765, 891, 1092
SsiI	CCGC	6 cut(s)	105, 162, 171, 174, 1119, 1153
SspMI	CTAG	1 cut(s)	506
SstI	GAGCTC	1 cut(s)	1066
StyD4I	CCNGG	6 cut(s)	296, 297, 383, 625, 1001, 1220
StyI	CCWWGG	3 cut(s)	222, 529, 679
TaaI	ACNGT	2 cut(s)	754, 950
TaiI	ACGT	1 cut(s)	1072
TaqI	TCGA	2 cut(s)	312, 1075
TaqII	GACCGA	1 cut(s)	1077
TasI	AATT	7 cut(s)	68, 332, 602, 632, 765, 891, 1092
TatI	WGTACW	1 cut(s)	1278
TauI	GCSGC	2 cut(s)	164, 174
TfiI	GAWTC	5 cut(s)	502, 608, 787, 836, 1217
Tru1I	TTAA	3 cut(s)	905, 963, 972
Tru9I	TTAA	3 cut(s)	905, 963, 972
TscAI	CASTG	1 cut(s)	1053
TseFI	GTSAC	2 cut(s)	344, 379
Tsp45I	GTSAC	2 cut(s)	344, 379
TspDTI	ATGAA	5 cut(s)	293, 421, 800, 1023, 1298
TspGWI	ACGGA	2 cut(s)	112, 899
TspMI	CCCGGG	1 cut(s)	297
TspRI	CASTG	1 cut(s)	1053
VpaK11BI	GGWCC	2 cut(s)	202, 387
XapI	RAATTY	2 cut(s)	332, 891
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229
XmaI	CCCGGG	1 cut(s)	297
XmnI	GAANNNNTTC	1 cut(s)	658
XspI	CTAG	1 cut(s)	506

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.