Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0013257.1

Orthogroup ID

OG0010955

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 6128

Gene Structure 6128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0013257.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1026 bp

atgactctctgcaactcatttctcctcaaaaccccaatcttccctcactcccatttcttcactcaccaatttcccaccaaacccatcttctccctttcctgctccgcaaccccctcttcctcctcctccgtgcctgaccccaaaaccaacgccaacgacggcaacgccgccaatggcggtggtgcgccgaagagcaagaggctttcggaccagtcctcgtgggaggccaaggactctgtgggcgaggactacttatacaggctcggcaaagaggccgacaacatgaacatcgccgtcggagcccgggccggtgtcgtcgatgaccttttcgtcgggaaattcctcggccgtgactccgatatcgtttttgattatcgccagaaggtcaccaggataaagtcggtaagttctacgaaactgggtgaaaggttatctattatctgcaatgattcagtatgccatatggcgaagaactaccttgctcatattctcaatacgaaagttcctttgattctaggtatttggggaggaaaaggccaaggaaagtcttttcagactgaacttgtatttcaagctatgggagttgaacctgtagttatgtctgctggggaattagaatcagaaagagctggggaaccagggaaattgatacgggaacgctatagaacagcttctcaagttgtccagaaccaaggcaagatgagctgtttgatgatcaatgacattgatgctgggctcggtagatttggaaacactcagatgacagtcaataatcaaattgttgttggaactttgatgaatctatgtgataatcctacaagagttagtattggacaagactggcgagaatcagatatcacaaacagagttcctatcattgttacaggaaatgatttttcaaaaatttatgctcccttaatccgtgatggaaggatggaaaagttttattggcaacctaatcgtgaagatatcattaacattgttaacagaatgtatgagaaagatggcatatccagggatgaagtt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0008047 GO:0008150 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009579 GO:0030234 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044093 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046863 GO:0050790 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

AAA

Protein Analysis

342

Amino Acids

37.86

Weight (kDa)

8.14

Isoelectric Point (pI)

29.62

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010955)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73110 AT1G73110
fragaria_vesca	FvH4_6g27970 FvH4_6g27970 FvH4_6g27970 FvH4_6g27970 FvH4_6g27970
malus_domestica	MD09G1230800.v1.1
prunus_persica	Prupe.3G107000_v2.0.a1 Prupe.3G107000_v2.0.a1
pyrus_communis	pycom09g14970
rosa_chinensis	RchiOBHm_Chr2g0131521
rosa_laevigata	RLG00000019201
rosa_multiflora	Rmu_sc0013257.1_g000001
rosa_roxburghii	Rroxscaffold_2G00112760
rosa_samantha	Rh2AG351100 Rh2BG357700 Rh2CG336700 Rh2DG375500
rosa_wichuraiana	Rw2G028500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	329
AciI	CCGC	3 cut(s)	105, 168, 177
AcoI	YGGCCR	1 cut(s)	346
AcsI	RAATTY	2 cut(s)	338, 903
AgsI	TTSAA	3 cut(s)	572, 587, 900
AjnI	CCWGG	3 cut(s)	389, 637, 1013
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AluBI	AGCT	4 cut(s)	575, 629, 671, 705
AluI	AGCT	4 cut(s)	575, 629, 671, 705
Ama87I	CYCGRG	1 cut(s)	303
AoxI	GGCC	5 cut(s)	225, 273, 306, 346, 535
ApoI	RAATTY	2 cut(s)	338, 903
Asp700I	GAANNNNTTC	1 cut(s)	670
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	208, 306
AsuC2I	CCSGG	2 cut(s)	304, 305
AsuHPI	GGTGA	3 cut(s)	56, 379, 434
AvaI	CYCGRG	1 cut(s)	303
AvaII	GGWCC	1 cut(s)	208
BanII	GRGCYC	2 cut(s)	304, 738
BauI	CACGAG	1 cut(s)	217
BccI	CCATC	4 cut(s)	92, 920, 928, 998
BceAI	ACGGC	3 cut(s)	175, 278, 333
BcgI	CGANNNNNNTGC	2 cut(s)	941, 975
BciT130I	CCWGG	3 cut(s)	391, 639, 1015
BclI	TGATCA	1 cut(s)	714
BcnI	CCSGG	2 cut(s)	304, 305
BfaI	CTAG	1 cut(s)	515
BfmI	CTRYAG	2 cut(s)	591, 661
BisI	GCNGC	1 cut(s)	168
BlsI	GCNGC	1 cut(s)	169
Bme1390I	CCNGG	5 cut(s)	304, 305, 391, 639, 1015
Bme18I	GGWCC	1 cut(s)	208
BmeT110I	CYCGRG	1 cut(s)	303
BmgT120I	GGNCC	2 cut(s)	208, 306
BmiI	GGNNCC	2 cut(s)	301, 636
BmrFI	CCNGG	5 cut(s)	304, 305, 391, 639, 1015
BmrI	ACTGGG	1 cut(s)	428
BmsI	GCATC	1 cut(s)	718
BmuI	ACTGGG	1 cut(s)	428
BpuEI	CTTGAG	1 cut(s)	660
BpuMI	CCSGG	2 cut(s)	304, 305
BsaJI	CCNNGG	7 cut(s)	228, 303, 343, 538, 638, 691, 1014
Bse118I	RCCGGY	1 cut(s)	308
Bse1I	ACTGG	3 cut(s)	211, 423, 845
Bse3DI	GCAATG	1 cut(s)	451
BseBI	CCWGG	3 cut(s)	391, 639, 1015
BseDI	CCNNGG	7 cut(s)	228, 303, 343, 538, 638, 691, 1014
BseGI	GGATG	2 cut(s)	939, 1024
BseMI	GCAATG	1 cut(s)	451
BseMII	CTCAG	1 cut(s)	770
BseNI	ACTGG	3 cut(s)	211, 423, 845
BseRI	GAGGAG	3 cut(s)	14, 112, 115
BseX3I	CGGCCG	1 cut(s)	346
BseYI	CCCAGC	3 cut(s)	605, 629, 731
Bsh1285I	CGRYCG	1 cut(s)	349
BshFI	GGCC	5 cut(s)	227, 275, 308, 348, 537
BsiEI	CGRYCG	1 cut(s)	349
BsiHKCI	CYCGRG	1 cut(s)	303
BsiSI	CCGG	2 cut(s)	304, 309
BsnI	GGCC	5 cut(s)	227, 275, 308, 348, 537
BsoBI	CYCGRG	1 cut(s)	303
Bsp1286I	GDGCHC	2 cut(s)	304, 738
Bsp143I	GATC	1 cut(s)	714
BspACI	CCGC	3 cut(s)	105, 168, 177
BspANI	GGCC	5 cut(s)	227, 275, 308, 348, 537
BspCNI	CTCAG	1 cut(s)	769
BspLI	GGNNCC	2 cut(s)	301, 636
BspQI	GCTCTTC	1 cut(s)	185
BsrDI	GCAATG	1 cut(s)	451
BsrFI	RCCGGY	1 cut(s)	308
BsrI	ACTGG	3 cut(s)	211, 423, 845
BssAI	RCCGGY	1 cut(s)	308
BssECI	CCNNGG	7 cut(s)	228, 303, 343, 538, 638, 691, 1014
BssMI	GATC	1 cut(s)	714
BssSI	CACGAG	1 cut(s)	217
BssT1I	CCWWGG	3 cut(s)	228, 538, 691
Bst2BI	CACGAG	1 cut(s)	217
Bst2UI	CCWGG	3 cut(s)	391, 639, 1015
Bst4CI	ACNGT	1 cut(s)	766
Bst6I	CTCTTC	2 cut(s)	121, 185
BstDEI	CTNAG	1 cut(s)	756
BstEII	GGTNACC	1 cut(s)	385
BstF5I	GGATG	2 cut(s)	939, 1024
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	717
BstMBI	GATC	1 cut(s)	714
BstMCI	CGRYCG	1 cut(s)	349
BstMWI	GCNNNNNNNGC	2 cut(s)	299, 702
BstNI	CCWGG	3 cut(s)	391, 639, 1015
BstPI	GGTNACC	1 cut(s)	385
BstSCI	CCNGG	5 cut(s)	302, 303, 389, 637, 1013
BstSFI	CTRYAG	2 cut(s)	591, 661
BstZI	CGGCCG	1 cut(s)	346
BsuRI	GGCC	5 cut(s)	227, 275, 308, 348, 537
BtgZI	GCGATG	1 cut(s)	274
BtsCI	GGATG	2 cut(s)	939, 1024
CfoI	GCGC	1 cut(s)	187
Cfr10I	RCCGGY	1 cut(s)	308
Cfr13I	GGNCC	2 cut(s)	208, 306
Cfr9I	CCCGGG	1 cut(s)	303
CspCI	CAANNNNNGTGG	2 cut(s)	160, 195
CviAII	CATG	1 cut(s)	283
DdeI	CTNAG	1 cut(s)	756
DpnI	GATC	1 cut(s)	716
DpnII	GATC	1 cut(s)	714
DrdI	GACNNNNNNGTC	1 cut(s)	329
DseDI	GACNNNNNNGTC	1 cut(s)	329
EaeI	YGGCCR	1 cut(s)	346
EagI	CGGCCG	1 cut(s)	346
Eam1104I	CTCTTC	2 cut(s)	121, 185
EarI	CTCTTC	2 cut(s)	121, 185
EclXI	CGGCCG	1 cut(s)	346
Eco130I	CCWWGG	3 cut(s)	228, 538, 691
Eco24I	GRGCYC	2 cut(s)	304, 738
Eco32I	GATATC	3 cut(s)	361, 856, 970
Eco47I	GGWCC	1 cut(s)	208
Eco52I	CGGCCG	1 cut(s)	346
Eco88I	CYCGRG	1 cut(s)	303
Eco91I	GGTNACC	1 cut(s)	385
EcoO65I	GGTNACC	1 cut(s)	385
EcoRII	CCWGG	3 cut(s)	389, 637, 1013
EcoRV	GATATC	3 cut(s)	361, 856, 970
EcoT14I	CCWWGG	3 cut(s)	228, 538, 691
EcoT38I	GRGCYC	2 cut(s)	304, 738
ErhI	CCWWGG	3 cut(s)	228, 538, 691
FaeI	CATG	1 cut(s)	286
FatI	CATG	1 cut(s)	282
FauNDI	CATATG	1 cut(s)	462
FbaI	TGATCA	1 cut(s)	714
Fnu4HI	GCNGC	1 cut(s)	168
FokI	GGATG	1 cut(s)	946
FriOI	GRGCYC	2 cut(s)	304, 738
Fsp4HI	GCNGC	1 cut(s)	168
FspBI	CTAG	1 cut(s)	515
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	1 cut(s)	168
GsaI	CCCAGC	3 cut(s)	609, 633, 735
HaeIII	GGCC	5 cut(s)	227, 275, 308, 348, 537
HapII	CCGG	2 cut(s)	304, 309
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	286
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	985
HindII	GTYRAC	1 cut(s)	985
HinfI	GANTC	8 cut(s)	4, 233, 353, 449, 511, 617, 799, 848
HpaI	GTTAAC	1 cut(s)	985
HpaII	CCGG	2 cut(s)	304, 309
HphI	GGTGA	3 cut(s)	56, 379, 434
Hpy166II	GTNNAC	1 cut(s)	985
Hpy188I	TCNGA	7 cut(s)	208, 299, 358, 555, 622, 759, 853
Hpy188III	TCNNGA	3 cut(s)	334, 685, 962
Hpy8I	GTNNAC	1 cut(s)	985
Hpy99I	CGWCG	4 cut(s)	161, 299, 320, 335
HpyAV	CCTTC	2 cut(s)	376, 924
HpyCH4III	ACNGT	1 cut(s)	766
HpyCH4V	TGCA	2 cut(s)	12, 444
HpyF10VI	GCNNNNNNNGC	2 cut(s)	299, 702
HpyF3I	CTNAG	1 cut(s)	756
Hsp92II	CATG	1 cut(s)	286
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	714
KspAI	GTTAAC	1 cut(s)	985
Kzo9I	GATC	1 cut(s)	714
LguI	GCTCTTC	1 cut(s)	185
LmnI	GCTCC	3 cut(s)	107, 299, 916
LweI	GCATC	1 cut(s)	718
MaeI	CTAG	1 cut(s)	515
MaeIII	GTNAC	3 cut(s)	350, 385, 880
MalI	GATC	1 cut(s)	716
MboI	GATC	1 cut(s)	714
MboII	GAAGA	7 cut(s)	31, 49, 79, 108, 202, 481, 977
MhlI	GDGCHC	2 cut(s)	304, 738
MluCI	AATT	6 cut(s)	68, 338, 611, 644, 777, 903
MlyI	GAGTC	2 cut(s)	227, 347
MmeI	TCCRAC	2 cut(s)	277, 766
MroXI	GAANNNNTTC	1 cut(s)	670
MseI	TTAA	3 cut(s)	917, 975, 984
MslI	CAYNNNNRTG	1 cut(s)	758
MspI	CCGG	2 cut(s)	304, 309
MspR9I	CCNGG	5 cut(s)	304, 305, 391, 639, 1015
MvaI	CCWGG	3 cut(s)	391, 639, 1015
MwoI	GCNNNNNNNGC	2 cut(s)	299, 702
NciI	CCSGG	2 cut(s)	304, 305
NdeI	CATATG	1 cut(s)	462
NdeII	GATC	1 cut(s)	714
NlaIII	CATG	1 cut(s)	286
NlaIV	GGNNCC	2 cut(s)	301, 636
NmeAIII	GCCGAG	2 cut(s)	243, 324
NmuCI	GTSAC	2 cut(s)	350, 385
PciSI	GCTCTTC	1 cut(s)	185
PdmI	GAANNNNTTC	1 cut(s)	670
PfeI	GAWTC	5 cut(s)	449, 511, 617, 799, 848
PkrI	GCNGC	1 cut(s)	169
PleI	GAGTC	2 cut(s)	227, 347
PpsI	GAGTC	2 cut(s)	227, 347
Psp6I	CCWGG	3 cut(s)	389, 637, 1013
PspEI	GGTNACC	1 cut(s)	385
PspFI	CCCAGC	3 cut(s)	605, 629, 731
PspGI	CCWGG	3 cut(s)	389, 637, 1013
PspN4I	GGNNCC	2 cut(s)	301, 636
PspPI	GGNCC	2 cut(s)	208, 306
RseI	CAYNNNNRTG	1 cut(s)	758
SapI	GCTCTTC	1 cut(s)	185
SaqAI	TTAA	3 cut(s)	917, 975, 984
SatI	GCNGC	1 cut(s)	168
Sau3AI	GATC	1 cut(s)	714
Sau96I	GGNCC	2 cut(s)	208, 306
SchI	GAGTC	2 cut(s)	227, 347
ScrFI	CCNGG	5 cut(s)	304, 305, 391, 639, 1015
SduI	GDGCHC	2 cut(s)	304, 738
SfaNI	GCATC	1 cut(s)	718
SfcI	CTRYAG	2 cut(s)	591, 661
SinI	GGWCC	1 cut(s)	208
SmaI	CCCGGG	1 cut(s)	305
SmiMI	CAYNNNNRTG	1 cut(s)	758
SmlI	CTYRAG	1 cut(s)	675
SmoI	CTYRAG	1 cut(s)	675
SrfI	GCCCGGGC	1 cut(s)	305
Sse9I	AATT	6 cut(s)	68, 338, 611, 644, 777, 903
SsiI	CCGC	3 cut(s)	105, 168, 177
SspMI	CTAG	1 cut(s)	515
StyD4I	CCNGG	5 cut(s)	302, 303, 389, 637, 1013
StyI	CCWWGG	3 cut(s)	228, 538, 691
TaaI	ACNGT	1 cut(s)	766
TaqI	TCGA	1 cut(s)	318
TasI	AATT	6 cut(s)	68, 338, 611, 644, 777, 903
TauI	GCSGC	1 cut(s)	170
TfiI	GAWTC	5 cut(s)	449, 511, 617, 799, 848
Tru1I	TTAA	3 cut(s)	917, 975, 984
Tru9I	TTAA	3 cut(s)	917, 975, 984
TseFI	GTSAC	2 cut(s)	350, 385
Tsp45I	GTSAC	2 cut(s)	350, 385
TspDTI	ATGAA	2 cut(s)	299, 812
TspGWI	ACGGA	2 cut(s)	118, 911
TspMI	CCCGGG	1 cut(s)	303
VpaK11BI	GGWCC	1 cut(s)	208
XapI	RAATTY	2 cut(s)	338, 903
XcmI	CCANNNNNNNNNTGG	1 cut(s)	235
XmaI	CCCGGG	1 cut(s)	303
XmnI	GAANNNNTTC	1 cut(s)	670
XspI	CTAG	1 cut(s)	515

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.