AT1G73470

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011234
Physical Location & Seq
Forward (+)
27625116 .. 27628325
3210 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73470.2

Sequence Viewer

Length: 1056 bp
ATGACCAGTGTCTCCGTCGCCGTCGTAGCTCCTCCGCATCGTTGCCCATTCTCTAGTCATCTGAATCTGAACAAGCTTTCTCTTCAAATTCCTAGAACCGGCTGGCGGAGGAAACAGCTAGGGTTTGCTTTAGCTTCTACTGCGGCTTCAGAATCGCCATCGGAAGCTACATATGATCCGGAGCTCCGTTTAGTTTTCGAGCTCGCTACCGATTCCGAGTTATATGAGCTTGAGAAAATCCTTTTTGGTCCCAGCTACTTCAGCCCTTTGCTGAAATCAATCCCAAACAAAGGAGGAGGTGACCGGCTTATGATAGGCCAAGACATTGAAGTGCGAGATGGTTTTATCGAAGCTCTTGAATCGAGATTCTTGTTTCTAGCTGCAGATGCTCGTTCAACACTCAGGGGTTGGAGGCCTTCATACAGAAACGTTTTACTTGCGGTGAGAAATAATTTGAATATTCCCTGCTCCAGCCAATTGCCAACCGAAGACCTAGAAGCAGAGATTTTTCTTTATCTTGTCGACAATTTCTCGAGTGAAGCATCAGGGGTTTTTCCAGGCATGTGGGAAAATTCTGAAGTCTCAGAGGCAGAGGGAAGCTTAGAACTCGGGCTCAGTAAATGGAAAGTTGAACTACTTGCCGCACTACAAGTGGGTGCTACAGAGGTCCAATCTATGATTCTGAAGGGTGGTGGCATGATCACATTCGCCAAAGTTTATCAGTTGTTGGCTAAGAAACTATCTGGAAAAGTATTCCTTGAAGCTGCCAACTACCAGATTAGGAAAGAGATGCTAAAAAAGGGTGGGCAGTTTGCTGCCATTAACTTGGAATCTCGAGCAGCTCTGTTAGCAGCGAAGCATGGATTTGCAGGGGCTGCATCCAGATACATTGGCTTAAAAACAGCGATGCAATTACTTGGCCCCATGATGTGGGGGACATTACTGGCTGACTTAGTGATTCAGATGCTCGAGACTGACTACGCTAGAATCCTAAGAGCAATTTACGCATTTGCACAGATTCGGATCACCAGGACATACAGGCTACCTTGTAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

351

Amino Acids

38.79

Weight (kDa)

8.82

Isoelectric Point (pI)

41.18

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 930
AccI GTMKAC 1 cut(s) 522
AccIII TCCGGA 1 cut(s) 178
AciI CCGC 5 cut(s) 35, 106, 143, 440, 642
AclI AACGTT 1 cut(s) 429
AclWI GGATC 2 cut(s) 170, 1031
AcsI RAATTY 2 cut(s) 87, 571
AcuI CTGAAG 4 cut(s) 132, 244, 597, 704
AfiI CCNNNNNNNGG 4 cut(s) 98, 105, 290, 930
AgsI TTSAA 7 cut(s) 86, 329, 359, 396, 457, 632, 761
AjnI CCWGG 2 cut(s) 556, 1028
AjuI GAANNNNNNNTTGG 2 cut(s) 663, 695
Alw21I GWGCWC 2 cut(s) 186, 204
Alw26I GTCTC 3 cut(s) 16, 586, 965
AlwI GGATC 2 cut(s) 170, 1031
AlwNI CAGNNNCTG 1 cut(s) 875
Ama87I CYCGRG 4 cut(s) 532, 608, 834, 968
Aor13HI TCCGGA 1 cut(s) 178
AoxI GGCC 3 cut(s) 316, 413, 919
ApeKI GCWGC 6 cut(s) 380, 764, 815, 839, 851, 875
ApoI RAATTY 2 cut(s) 87, 571
AspS9I GGNCC 3 cut(s) 248, 667, 920
AsuHPI GGTGA 3 cut(s) 311, 454, 1018
AvaI CYCGRG 4 cut(s) 532, 608, 834, 968
AvaII GGWCC 2 cut(s) 248, 667
BanII GRGCYC 3 cut(s) 186, 204, 615
BbsI GAAGAC 1 cut(s) 495
Bbv12I GWGCWC 2 cut(s) 186, 204
BbvI GCAGC 6 cut(s) 367, 751, 802, 851, 862, 863
BccI CCATC 2 cut(s) 166, 332
BceAI ACGGC 1 cut(s) 5
BciT130I CCWGG 2 cut(s) 558, 1030
BclI TGATCA 1 cut(s) 699
BcoDI GTCTC 3 cut(s) 16, 586, 965
BfaI CTAG 6 cut(s) 54, 93, 119, 377, 494, 984
BfmI CTRYAG 2 cut(s) 381, 660
BisI GCNGC 8 cut(s) 144, 381, 642, 765, 816, 840, 852, 876
BlsI GCNGC 8 cut(s) 145, 382, 643, 766, 817, 841, 853, 877
Bme1390I CCNGG 2 cut(s) 558, 1030
Bme18I GGWCC 2 cut(s) 248, 667
BmeT110I CYCGRG 4 cut(s) 532, 608, 834, 968
BmgT120I GGNCC 3 cut(s) 248, 667, 920
BmiI GGNNCC 2 cut(s) 250, 922
BmrFI CCNGG 2 cut(s) 558, 1030
BmsI GCATC 7 cut(s) 46, 376, 551, 780, 887, 897, 954
BoxI GACNNNNGTC 1 cut(s) 8
BpiI GAAGAC 1 cut(s) 495
BpmI CTGGAG 1 cut(s) 454
BpuEI CTTGAG 1 cut(s) 251
BsaBI GATNNNNATC 1 cut(s) 1022
BsaWI WCCGGW 1 cut(s) 178
Bsc4I CCNNNNNNNGG 4 cut(s) 98, 105, 290, 930
Bse118I RCCGGY 2 cut(s) 98, 303
Bse1I ACTGG 2 cut(s) 6, 948
Bse8I GATNNNNATC 1 cut(s) 1022
BseAI TCCGGA 1 cut(s) 178
BseBI CCWGG 2 cut(s) 558, 1030
BseGI GGATG 1 cut(s) 878
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 4 cut(s) 98, 105, 290, 930
BseMII CTCAG 3 cut(s) 415, 597, 628
BseNI ACTGG 2 cut(s) 6, 948
BseRI GAGGAG 2 cut(s) 21, 309
BseXI GCAGC 6 cut(s) 367, 751, 802, 851, 862, 863
BseYI CCCAGC 1 cut(s) 251
BshFI GGCC 3 cut(s) 318, 415, 921
BsiHKAI GWGCWC 2 cut(s) 186, 204
BsiHKCI CYCGRG 4 cut(s) 532, 608, 834, 968
BsiSI CCGG 3 cut(s) 99, 179, 304
BslFI GGGAC 2 cut(s) 234, 949
BslI CCNNNNNNNGG 4 cut(s) 98, 105, 290, 930
BsmAI GTCTC 3 cut(s) 16, 586, 965
BsmFI GGGAC 2 cut(s) 234, 949
BsnI GGCC 3 cut(s) 318, 415, 921
BsoBI CYCGRG 4 cut(s) 532, 608, 834, 968
Bsp1286I GDGCHC 3 cut(s) 186, 204, 615
Bsp13I TCCGGA 1 cut(s) 178
Bsp143I GATC 3 cut(s) 175, 699, 1023
BspACI CCGC 5 cut(s) 35, 106, 143, 440, 642
BspANI GGCC 3 cut(s) 318, 415, 921
BspCNI CTCAG 3 cut(s) 414, 596, 627
BspEI TCCGGA 1 cut(s) 178
BspLI GGNNCC 2 cut(s) 250, 922
BspMAI CTGCAG 1 cut(s) 385
BspPI GGATC 2 cut(s) 170, 1031
BsrFI RCCGGY 2 cut(s) 98, 303
BsrI ACTGG 2 cut(s) 6, 948
BssAI RCCGGY 2 cut(s) 98, 303
BssMI GATC 3 cut(s) 175, 699, 1023
Bst2UI CCWGG 2 cut(s) 558, 1030
Bst6I CTCTTC 1 cut(s) 87
BstAPI GCANNNNNTGC 1 cut(s) 875
BstC8I GCNNGC 2 cut(s) 104, 204
BstDEI CTNAG 7 cut(s) 401, 583, 601, 614, 732, 952, 992
BstEII GGTNACC 1 cut(s) 299
BstF5I GGATG 1 cut(s) 878
BstKTI GATC 3 cut(s) 178, 702, 1026
BstMAI GTCTC 3 cut(s) 16, 586, 965
BstMBI GATC 3 cut(s) 175, 699, 1023
BstMWI GCNNNNNNNGC 7 cut(s) 26, 140, 261, 386, 848, 875, 1004
BstNI CCWGG 2 cut(s) 558, 1030
BstNSI RCATGY 1 cut(s) 565
BstPAI GACNNNNGTC 1 cut(s) 8
BstPI GGTNACC 1 cut(s) 299
BstSCI CCNGG 2 cut(s) 556, 1028
BstSFI CTRYAG 2 cut(s) 381, 660
BstV1I GCAGC 6 cut(s) 367, 751, 802, 851, 862, 863
BstV2I GAAGAC 1 cut(s) 495
BstXI CCANNNNNNTGG 2 cut(s) 564, 826
BsuRI GGCC 3 cut(s) 318, 415, 921
BtgZI GCGATG 1 cut(s) 920
BtsCI GGATG 1 cut(s) 878
BtsIMutI CAGTG 1 cut(s) 13
Cac8I GCNNGC 2 cut(s) 104, 204
CaiI CAGNNNCTG 1 cut(s) 875
Cfr10I RCCGGY 2 cut(s) 98, 303
Cfr13I GGNCC 3 cut(s) 248, 667, 920
CviAII CATG 4 cut(s) 562, 697, 860, 925
DdeI CTNAG 7 cut(s) 401, 583, 601, 614, 732, 952, 992
DpnI GATC 3 cut(s) 177, 701, 1025
DpnII GATC 3 cut(s) 175, 699, 1023
Eam1104I CTCTTC 1 cut(s) 87
EarI CTCTTC 1 cut(s) 87
EciI GGCGGA 1 cut(s) 121
Ecl136II GAGCTC 2 cut(s) 184, 202
Eco147I AGGCCT 1 cut(s) 415
Eco24I GRGCYC 3 cut(s) 186, 204, 615
Eco47I GGWCC 2 cut(s) 248, 667
Eco53kI GAGCTC 2 cut(s) 184, 202
Eco57I CTGAAG 4 cut(s) 132, 244, 597, 704
Eco88I CYCGRG 4 cut(s) 532, 608, 834, 968
Eco91I GGTNACC 1 cut(s) 299
EcoICRI GAGCTC 2 cut(s) 184, 202
EcoO65I GGTNACC 1 cut(s) 299
EcoRII CCWGG 2 cut(s) 556, 1028
EcoT38I GRGCYC 3 cut(s) 186, 204, 615
FaeI CATG 4 cut(s) 565, 700, 863, 928
FalI AAGNNNNNCTT 2 cut(s) 741, 773
FaqI GGGAC 2 cut(s) 234, 949
FatI CATG 4 cut(s) 561, 696, 859, 924
FauNDI CATATG 1 cut(s) 172
FbaI TGATCA 1 cut(s) 699
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 8 cut(s) 144, 381, 642, 765, 816, 840, 852, 876
FokI GGATG 1 cut(s) 865
FriOI GRGCYC 3 cut(s) 186, 204, 615
Fsp4HI GCNGC 8 cut(s) 144, 381, 642, 765, 816, 840, 852, 876
FspBI CTAG 6 cut(s) 54, 93, 119, 377, 494, 984
GluI GCNGC 8 cut(s) 144, 381, 642, 765, 816, 840, 852, 876
GsaI CCCAGC 1 cut(s) 255
GsuI CTGGAG 1 cut(s) 454
HaeIII GGCC 3 cut(s) 318, 415, 921
HapII CCGG 3 cut(s) 99, 179, 304
Hin1II CATG 4 cut(s) 565, 700, 863, 928
HincII GTYRAC 1 cut(s) 523
HindII GTYRAC 1 cut(s) 523
HindIII AAGCTT 2 cut(s) 74, 598
HpaII CCGG 3 cut(s) 99, 179, 304
HphI GGTGA 3 cut(s) 311, 454, 1018
Hpy166II GTNNAC 1 cut(s) 523
Hpy188III TCNNGA 8 cut(s) 179, 356, 363, 532, 744, 834, 882, 970
Hpy8I GTNNAC 1 cut(s) 523
Hpy99I CGWCG 2 cut(s) 20, 26
HpyAV CCTTC 2 cut(s) 426, 679
HpyCH4IV ACGT 1 cut(s) 429
HpyCH4V TGCA 5 cut(s) 383, 869, 878, 910, 1013
HpyF10VI GCNNNNNNNGC 7 cut(s) 26, 140, 261, 386, 848, 875, 1004
HpyF3I CTNAG 7 cut(s) 401, 583, 601, 614, 732, 952, 992
HpySE526I ACGT 1 cut(s) 429
Hsp92II CATG 4 cut(s) 565, 700, 863, 928
Kpn2I TCCGGA 1 cut(s) 178
Ksp22I TGATCA 1 cut(s) 699
Kzo9I GATC 3 cut(s) 175, 699, 1023
LmnI GCTCC 4 cut(s) 34, 181, 189, 473
Lsp1109I GCAGC 6 cut(s) 367, 751, 802, 851, 862, 863
LweI GCATC 7 cut(s) 46, 376, 551, 780, 887, 897, 954
MaeI CTAG 6 cut(s) 54, 93, 119, 377, 494, 984
MaeII ACGT 1 cut(s) 429
MaeIII GTNAC 1 cut(s) 299
MalI GATC 3 cut(s) 177, 701, 1025
MboI GATC 3 cut(s) 175, 699, 1023
MboII GAAGA 2 cut(s) 74, 500
MfeI CAATTG 1 cut(s) 476
MhlI GDGCHC 3 cut(s) 186, 204, 615
MluCI AATT 7 cut(s) 87, 451, 476, 526, 571, 911, 999
MmeI TCCRAC 1 cut(s) 389
MnlI CCTC 8 cut(s) 42, 102, 287, 290, 405, 580, 586, 658
MroI TCCGGA 1 cut(s) 178
MseI TTAA 2 cut(s) 822, 896
MslI CAYNNNNRTG 1 cut(s) 329
MspI CCGG 3 cut(s) 99, 179, 304
MspR9I CCNGG 2 cut(s) 558, 1030
MunI CAATTG 1 cut(s) 476
MvaI CCWGG 2 cut(s) 558, 1030
MwoI GCNNNNNNNGC 7 cut(s) 26, 140, 261, 386, 848, 875, 1004
NdeI CATATG 1 cut(s) 172
NdeII GATC 3 cut(s) 175, 699, 1023
NlaIII CATG 4 cut(s) 565, 700, 863, 928
NlaIV GGNNCC 2 cut(s) 250, 922
NmuCI GTSAC 1 cut(s) 299
NspI RCATGY 1 cut(s) 565
PaeR7I CTCGAG 3 cut(s) 532, 834, 968
PceI AGGCCT 1 cut(s) 415
PflMI CCANNNNNTGG 1 cut(s) 930
PkrI GCNGC 8 cut(s) 145, 382, 643, 766, 817, 841, 853, 877
PshAI GACNNNNGTC 1 cut(s) 8
Psp124BI GAGCTC 2 cut(s) 186, 204
Psp1406I AACGTT 1 cut(s) 429
Psp6I CCWGG 2 cut(s) 556, 1028
PspEI GGTNACC 1 cut(s) 299
PspFI CCCAGC 1 cut(s) 251
PspGI CCWGG 2 cut(s) 556, 1028
PspN4I GGNNCC 2 cut(s) 250, 922
PspPI GGNCC 3 cut(s) 248, 667, 920
PstI CTGCAG 1 cut(s) 385
PstNI CAGNNNCTG 1 cut(s) 875
RseI CAYNNNNRTG 1 cut(s) 329
SacI GAGCTC 2 cut(s) 186, 204
SalI GTCGAC 1 cut(s) 521
SaqAI TTAA 2 cut(s) 822, 896
SatI GCNGC 8 cut(s) 144, 381, 642, 765, 816, 840, 852, 876
Sau3AI GATC 3 cut(s) 175, 699, 1023
Sau96I GGNCC 3 cut(s) 248, 667, 920
ScrFI CCNGG 2 cut(s) 558, 1030
SduI GDGCHC 3 cut(s) 186, 204, 615
SfaNI GCATC 7 cut(s) 46, 376, 551, 780, 887, 897, 954
SfcI CTRYAG 2 cut(s) 381, 660
Sfr274I CTCGAG 3 cut(s) 532, 834, 968
SinI GGWCC 2 cut(s) 248, 667
SlaI CTCGAG 3 cut(s) 532, 834, 968
SmiMI CAYNNNNRTG 1 cut(s) 329
SmlI CTYRAG 4 cut(s) 230, 532, 834, 968
SmoI CTYRAG 4 cut(s) 230, 532, 834, 968
Sse9I AATT 7 cut(s) 87, 451, 476, 526, 571, 911, 999
SseBI AGGCCT 1 cut(s) 415
SsiI CCGC 5 cut(s) 35, 106, 143, 440, 642
SspI AATATT 1 cut(s) 460
SspMI CTAG 6 cut(s) 54, 93, 119, 377, 494, 984
SstI GAGCTC 2 cut(s) 186, 204
StuI AGGCCT 1 cut(s) 415
StyD4I CCNGG 2 cut(s) 556, 1028
TaiI ACGT 1 cut(s) 432
TaqI TCGA 7 cut(s) 198, 348, 362, 522, 533, 835, 969
TasI AATT 7 cut(s) 87, 451, 476, 526, 571, 911, 999
TauI GCSGC 2 cut(s) 146, 644
Tru1I TTAA 2 cut(s) 822, 896
Tru9I TTAA 2 cut(s) 822, 896
TscAI CASTG 1 cut(s) 13
TseFI GTSAC 1 cut(s) 299
TseI GCWGC 6 cut(s) 380, 764, 815, 839, 851, 875
Tsp45I GTSAC 1 cut(s) 299
TspDTI ATGAA 1 cut(s) 408
TspGWI ACGGA 2 cut(s) 4, 176
TspRI CASTG 1 cut(s) 13
Van91I CCANNNNNTGG 1 cut(s) 930
VpaK11BI GGWCC 2 cut(s) 248, 667
XapI RAATTY 2 cut(s) 87, 571
XceI RCATGY 1 cut(s) 565
XhoI CTCGAG 3 cut(s) 532, 834, 968
XmiI GTMKAC 1 cut(s) 522
XspI CTAG 6 cut(s) 54, 93, 119, 377, 494, 984
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.