MD06G1234700.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0011234
Physical Location & Seq
Reverse (-)
36577707 .. 36582550
4844 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1234700.v1.1.491

Sequence Viewer

Length: 1056 bp
ATGTCCACTGCCTCATCAGCTCTGGCGCTCCACCTCCCCTTTGCTCCCCCAATCACCGCCGCCGCCACCAAACTCACTTACCCAATACGCAGCTCACGGTGGTCTGCAACTGGTGTGAGGCTCGTGGGTTGTGCTCGTGCTGCAATTTCAGGAAGAGGGCATGGTACATTTGATCCTGAACTCCGTTCTGTGCTTGAACTCGCCACCGATTCCGAGTTATATGAGCTTGAAAGAATCCTTTTTGGCCCTAGCTACTTCAGCCCGTTGCTGAAGTCTATAATGAGTAGAACCAATGTCGACCATTCAATGGTTGAAGAGGATCTCGATGAACGAGAGGAGTTTTTAGCAGTATTAGAGTCTCGATTCTTATTCCTCGCAGCCGATGCACGGTCTACGATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTGCGAAAAGAGTTAAACGTTCCTTGCTCAAGCAAATTGTCAACTGAAGACCTTGAAGCAGAGATTTTTCTTCATCTGTTGCGAGACTATTCAAGTGAAGAATCAGGAAATTTTGAGGGCTTGTTGGAGTTCCCTGAACTGTCTGATGGTCAACAAAGTCTTCAACTTGGACTCAGTCAATGGAAGGTACAGGCCCTTAGTGCTTTAAAAGTTGGGGCAGCAGAGCTCCGATCAATGTTTTTGAAGGGTGGTGGTATCTTTACTTTGGCGAAGATTTATCAGTTGGTAGCTAGAAAGTTATCTGGAAAGGTGTTCCTAGAAGCCGCCAACTATCAGCTAAAAAGGGATTTTGTTAGAAAGGGTGGACAATTAGCTGCTATGAATCTCGAGTCCAGAGCAGCCTTTCTTGCGGCAAAACAGGGTTTTGCAGGCGCTGCATCAAGATATCTTGGTTTAAGAAGCATGATGGCTTTGCTTGGCCCAGTGCTTTGGGGAACATTTCTGGCAGACGTTGTTATTCAAATGCTCGGAACTGATTATGCAAGAATCTTGCGAGCTATTTATGCTTTTGCGCAGATCCGCATCACTCGCACATATAGGCTACCGCCTGATTATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.89

Weight (kDa)

9.11

Isoelectric Point (pI)

45.9

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 1011
AccB7I CCANNNNNTGG 1 cut(s) 307
AccI GTMKAC 2 cut(s) 297, 392
AciI CCGC 7 cut(s) 57, 60, 63, 762, 848, 1018, 1043
AclI AACGTT 1 cut(s) 456
AclWI GGATC 3 cut(s) 167, 327, 1009
AcsI RAATTY 1 cut(s) 547
AcuI CTGAAG 3 cut(s) 241, 290, 504
AfaI GTAC 2 cut(s) 166, 627
AfiI CCNNNNNNNGG 2 cut(s) 307, 387
AgsI TTSAA 9 cut(s) 197, 230, 306, 314, 494, 531, 602, 682, 959
AluBI AGCT 9 cut(s) 20, 93, 226, 252, 664, 728, 775, 812, 995
AluI AGCT 9 cut(s) 20, 93, 226, 252, 664, 728, 775, 812, 995
Alw21I GWGCWC 2 cut(s) 136, 666
Alw26I GTCTC 2 cut(s) 363, 516
AlwI GGATC 3 cut(s) 167, 327, 1009
AlwNI CAGNNNCTG 1 cut(s) 872
Ama87I CYCGRG 1 cut(s) 824
AoxI GGCC 4 cut(s) 244, 410, 630, 916
ApeKI GCWGC 7 cut(s) 90, 140, 377, 656, 812, 836, 872
ApoI RAATTY 1 cut(s) 547
AspLEI GCGC 3 cut(s) 28, 872, 1012
AspS9I GGNCC 3 cut(s) 245, 631, 917
AsuHPI GGTGA 1 cut(s) 46
AvaI CYCGRG 1 cut(s) 824
BanII GRGCYC 1 cut(s) 666
BauI CACGAG 2 cut(s) 122, 135
BbsI GAAGAC 2 cut(s) 492, 590
Bbv12I GWGCWC 2 cut(s) 136, 666
BbvI GCAGC 7 cut(s) 102, 127, 389, 668, 799, 848, 859
BccI CCATC 3 cut(s) 421, 578, 898
BcoDI GTCTC 2 cut(s) 363, 516
BfaI CTAG 3 cut(s) 249, 729, 755
BfoI RGCGCY 2 cut(s) 29, 873
BmeT110I CYCGRG 1 cut(s) 824
BmgT120I GGNCC 3 cut(s) 245, 631, 917
BmrI ACTGGG 1 cut(s) 914
BmsI GCATC 3 cut(s) 373, 884, 1029
BmuI ACTGGG 1 cut(s) 914
BpiI GAAGAC 2 cut(s) 492, 590
BpuEI CTTGAG 1 cut(s) 451
BsaBI GATNNNNATC 1 cut(s) 1019
Bsc4I CCNNNNNNNGG 2 cut(s) 307, 387
Bse1I ACTGG 2 cut(s) 115, 920
Bse8I GATNNNNATC 1 cut(s) 1019
BseJI GATNNNNATC 1 cut(s) 1019
BseLI CCNNNNNNNGG 2 cut(s) 307, 387
BseMII CTCAG 1 cut(s) 625
BseNI ACTGG 2 cut(s) 115, 920
BseRI GAGGAG 1 cut(s) 350
BseXI GCAGC 7 cut(s) 102, 127, 389, 668, 799, 848, 859
BshFI GGCC 4 cut(s) 246, 412, 632, 918
BsiHKAI GWGCWC 2 cut(s) 136, 666
BsiHKCI CYCGRG 1 cut(s) 824
BslI CCNNNNNNNGG 2 cut(s) 307, 387
BsmAI GTCTC 2 cut(s) 363, 516
BsnI GGCC 4 cut(s) 246, 412, 632, 918
BsoBI CYCGRG 1 cut(s) 824
Bsp1286I GDGCHC 2 cut(s) 136, 666
Bsp143I GATC 4 cut(s) 172, 319, 668, 1014
BspACI CCGC 7 cut(s) 57, 60, 63, 762, 848, 1018, 1043
BspANI GGCC 4 cut(s) 246, 412, 632, 918
BspCNI CTCAG 1 cut(s) 624
BspPI GGATC 3 cut(s) 167, 327, 1009
BsrI ACTGG 2 cut(s) 115, 920
BssMI GATC 4 cut(s) 172, 319, 668, 1014
BssSI CACGAG 2 cut(s) 122, 135
Bst2BI CACGAG 2 cut(s) 122, 135
Bst4CI ACNGT 3 cut(s) 99, 390, 579
Bst6I CTCTTC 2 cut(s) 148, 309
BstAPI GCANNNNNTGC 2 cut(s) 383, 872
BstC8I GCNNGC 3 cut(s) 435, 868, 993
BstDEI CTNAG 2 cut(s) 611, 635
BstH2I RGCGCY 2 cut(s) 29, 873
BstHHI GCGC 3 cut(s) 28, 872, 1012
BstKTI GATC 4 cut(s) 175, 322, 671, 1017
BstMAI GTCTC 2 cut(s) 363, 516
BstMBI GATC 4 cut(s) 172, 319, 668, 1014
BstV1I GCAGC 7 cut(s) 102, 127, 389, 668, 799, 848, 859
BstV2I GAAGAC 2 cut(s) 492, 590
BstX2I RGATCY 2 cut(s) 319, 1014
BstXI CCANNNNNNTGG 1 cut(s) 927
BstYI RGATCY 2 cut(s) 319, 1014
BsuRI GGCC 4 cut(s) 246, 412, 632, 918
BtsI GCAGTG 2 cut(s) 6, 444
BtsIMutI CAGTG 3 cut(s) 6, 444, 927
Cac8I GCNNGC 3 cut(s) 435, 868, 993
CaiI CAGNNNCTG 1 cut(s) 872
CfoI GCGC 3 cut(s) 28, 872, 1012
Cfr13I GGNCC 3 cut(s) 245, 631, 917
Csp6I GTAC 2 cut(s) 165, 626
CviAII CATG 2 cut(s) 161, 901
CviQI GTAC 2 cut(s) 165, 626
DdeI CTNAG 2 cut(s) 611, 635
DpnI GATC 4 cut(s) 174, 321, 670, 1016
DpnII GATC 4 cut(s) 172, 319, 668, 1014
DraI TTTAAA 1 cut(s) 645
Eam1104I CTCTTC 2 cut(s) 148, 309
EarI CTCTTC 2 cut(s) 148, 309
Ecl136II GAGCTC 1 cut(s) 664
Eco24I GRGCYC 1 cut(s) 666
Eco32I GATATC 1 cut(s) 884
Eco53kI GAGCTC 1 cut(s) 664
Eco57I CTGAAG 3 cut(s) 241, 290, 504
Eco88I CYCGRG 1 cut(s) 824
EcoICRI GAGCTC 1 cut(s) 664
EcoO109I RGGNCCY 1 cut(s) 631
EcoRV GATATC 1 cut(s) 884
EcoT38I GRGCYC 1 cut(s) 666
FaeI CATG 2 cut(s) 164, 904
FatI CATG 2 cut(s) 160, 900
FblI GTMKAC 2 cut(s) 297, 392
FriOI GRGCYC 1 cut(s) 666
FspBI CTAG 3 cut(s) 249, 729, 755
FspI TGCGCA 1 cut(s) 1011
GlaI GCGC 3 cut(s) 27, 871, 1011
HaeII RGCGCY 2 cut(s) 29, 873
HaeIII GGCC 4 cut(s) 246, 412, 632, 918
HhaI GCGC 3 cut(s) 28, 872, 1012
Hin1II CATG 2 cut(s) 164, 904
Hin6I GCGC 3 cut(s) 26, 870, 1010
HinP1I GCGC 3 cut(s) 26, 870, 1010
HincII GTYRAC 3 cut(s) 298, 480, 590
HindII GTYRAC 3 cut(s) 298, 480, 590
HinfI GANTC 9 cut(s) 209, 234, 356, 363, 539, 609, 820, 827, 984
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 6 cut(s) 6, 298, 393, 480, 590, 803
Hpy188I TCNGA 4 cut(s) 214, 583, 668, 968
Hpy188III TCNNGA 9 cut(s) 150, 176, 323, 360, 543, 741, 824, 831, 879
Hpy8I GTNNAC 6 cut(s) 6, 298, 393, 480, 590, 803
HpyAV CCTTC 2 cut(s) 616, 676
HpyCH4III ACNGT 3 cut(s) 99, 390, 579
HpyCH4IV ACGT 2 cut(s) 456, 948
HpyCH4V TGCA 7 cut(s) 107, 143, 386, 437, 866, 875, 980
HpyF3I CTNAG 2 cut(s) 611, 635
HpySE526I ACGT 2 cut(s) 456, 948
Hsp92II CATG 2 cut(s) 164, 904
HspAI GCGC 3 cut(s) 26, 870, 1010
Kzo9I GATC 4 cut(s) 172, 319, 668, 1014
LmnI GCTCC 3 cut(s) 33, 49, 669
Lsp1109I GCAGC 7 cut(s) 102, 127, 389, 668, 799, 848, 859
LweI GCATC 3 cut(s) 373, 884, 1029
MaeI CTAG 3 cut(s) 249, 729, 755
MaeII ACGT 2 cut(s) 456, 948
MalI GATC 4 cut(s) 174, 321, 670, 1016
MboI GATC 4 cut(s) 172, 319, 668, 1014
MboII GAAGA 7 cut(s) 165, 326, 497, 500, 548, 590, 721
MflI RGATCY 2 cut(s) 319, 1014
MhlI GDGCHC 2 cut(s) 136, 666
MluCI AATT 4 cut(s) 144, 473, 547, 806
MlyI GAGTC 3 cut(s) 365, 603, 836
MmeI TCCRAC 2 cut(s) 386, 543
MnlI CCTC 9 cut(s) 22, 44, 111, 149, 310, 328, 383, 402, 547
MseI TTAA 3 cut(s) 452, 644, 893
NdeII GATC 4 cut(s) 172, 319, 668, 1014
NlaIII CATG 2 cut(s) 164, 904
NsbI TGCGCA 1 cut(s) 1011
PaeR7I CTCGAG 1 cut(s) 824
PfeI GAWTC 6 cut(s) 209, 234, 363, 539, 820, 984
PflFI GACNNNGTC 1 cut(s) 612
PflMI CCANNNNNTGG 1 cut(s) 307
PleI GAGTC 3 cut(s) 364, 603, 835
PpsI GAGTC 3 cut(s) 364, 603, 835
Psp124BI GAGCTC 1 cut(s) 666
Psp1406I AACGTT 1 cut(s) 456
PspPI GGNCC 3 cut(s) 245, 631, 917
PstNI CAGNNNCTG 1 cut(s) 872
PsuI RGATCY 2 cut(s) 319, 1014
PsyI GACNNNGTC 1 cut(s) 612
RsaI GTAC 2 cut(s) 166, 627
RsaNI GTAC 2 cut(s) 165, 626
SacI GAGCTC 1 cut(s) 666
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 3 cut(s) 452, 644, 893
Sau3AI GATC 4 cut(s) 172, 319, 668, 1014
Sau96I GGNCC 3 cut(s) 245, 631, 917
SchI GAGTC 3 cut(s) 365, 603, 836
SduI GDGCHC 2 cut(s) 136, 666
SfaNI GCATC 3 cut(s) 373, 884, 1029
Sfr274I CTCGAG 1 cut(s) 824
SlaI CTCGAG 1 cut(s) 824
SmlI CTYRAG 2 cut(s) 466, 824
SmoI CTYRAG 2 cut(s) 466, 824
Sse9I AATT 4 cut(s) 144, 473, 547, 806
SsiI CCGC 7 cut(s) 57, 60, 63, 762, 848, 1018, 1043
SspMI CTAG 3 cut(s) 249, 729, 755
SstI GAGCTC 1 cut(s) 666
TaaI ACNGT 3 cut(s) 99, 390, 579
TaiI ACGT 2 cut(s) 459, 951
TaqI TCGA 4 cut(s) 297, 324, 361, 825
TasI AATT 4 cut(s) 144, 473, 547, 806
TauI GCSGC 4 cut(s) 62, 65, 764, 851
TfiI GAWTC 6 cut(s) 209, 234, 363, 539, 820, 984
Tru1I TTAA 3 cut(s) 452, 644, 893
Tru9I TTAA 3 cut(s) 452, 644, 893
TscAI CASTG 3 cut(s) 13, 444, 927
TseI GCWGC 7 cut(s) 90, 140, 377, 656, 812, 836, 872
TspDTI ATGAA 3 cut(s) 342, 500, 833
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 3 cut(s) 13, 444, 927
Tth111I GACNNNGTC 1 cut(s) 612
Van91I CCANNNNNTGG 1 cut(s) 307
XapI RAATTY 1 cut(s) 547
XhoI CTCGAG 1 cut(s) 824
XmiI GTMKAC 2 cut(s) 297, 392
XspI CTAG 3 cut(s) 249, 729, 755
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.