Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr14

Orthogroup ID

OG0011234

Physical Location & Seq

Genomic Coordinates Reverse (-)

32053887 .. 32065770

Gene Structure 11884 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD14G1241900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 954 bp

ATGTCCACTGCCTCATCAGCTCTGGCGCTCCACCTCCCCTTTGCTCCCCCAATCGCCACCACCGCCTCCGCTGCCGCCATCAAACTCACTTACCCAATAAGCAGCTCACGGTGGTCAGCAAGTGGTTTGAGGCTCGTAGGTTCTGCTCATGCAGCAATTTCAGGAAGCGGACAAGGAACCTTTGATCCTGAGCTCCGTTCTGTGCTTGAACTCGCCACGAATTCTGAGTTATATGAGCTTGAAAGAATCCTATTTGGCCCTAGCTACTTCAGCCCTTTGCTGAAGTCTATAATGAGTAGAACCAATGTTGACTATGCGATGGTTGAAGAGGATCTCCATAAGCGAGAGGAGTTTTTAACAGTATTAGAGTCTCGATTCTTATTCCTTGCAGCCGAAGCCCGGTCTACGATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTACTTACAGTAAGGAAAGAGTTGAACATTCCTTGCTCGAGCAAATTGTCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTGTTGCGAGACTATTCAAGTGAAGAATCAGGAAATTTCGAGGGCTTGTTGGAGTTCTCTGAGCCATCTGATGGTCAACATAGTCTTCAATTTGGACTCAGTCAATGGAAGGTGCAGGCCCTCAGTGCTTTAAAAGTCGGGGCAGCAGAGCTCCGATCCATGTTTTTGAAGGGAGGACAATTAGCTGCTATTAATCTAGAGTCAGGAGCAGCCCTTCTTGCGGCAAAACAGGGTTTTGCAGGGGCTACATCAAGATATCTTGGTTTAAGAAGCATGATGGCTTTGCTTGGCCCAGTGCTTTGGGGAACATTTTTGGCAGATGTTGTCATTCAAATGCTCGGAACTGATTACGCAAGAATCTTGCGGGCAATTTATGCTTTTGCACAGATCCGTATCACTGGAACATATAGGCTACCGCCTGATTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

318

Amino Acids

34.62

Weight (kDa)

6.25

Isoelectric Point (pI)

49.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011234)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G73470 AT1G73470 AT1G73470
fragaria_vesca	FvH4_5g17910 FvH4_5g17910
malus_domestica	MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica	Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis	pycom06g20940
rosa_chinensis	RchiOBHm_Chr7g0177701
rosa_laevigata	RLG00000005513
rosa_multiflora	Rmu_sc0004786.1_g000002
rosa_roxburghii	Rroxscaffold_3G00275640
rosa_rugosa	Rorug06G0408400
rosa_samantha	Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana	Rw7G000680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	596
AccI	GTMKAC	1 cut(s)	404
AciI	CCGC	7 cut(s)	63, 69, 75, 168, 746, 889, 941
AclWI	GGATC	4 cut(s)	179, 339, 675, 907
AcsI	RAATTY	2 cut(s)	220, 559
AcuI	CTGAAG	3 cut(s)	253, 302, 516
AfiI	CCNNNNNNNGG	3 cut(s)	399, 596, 745
AgsI	TTSAA	9 cut(s)	209, 242, 326, 466, 506, 543, 614, 694, 857
AloI	GAACNNNNNNTCC	2 cut(s)	169, 201
AluBI	AGCT	7 cut(s)	20, 105, 193, 238, 264, 676, 710
AluI	AGCT	7 cut(s)	20, 105, 193, 238, 264, 676, 710
Alw21I	GWGCWC	2 cut(s)	195, 678
Alw26I	GTCTC	2 cut(s)	375, 528
AlwI	GGATC	4 cut(s)	179, 339, 675, 907
Ama87I	CYCGRG	1 cut(s)	478
AoxI	GGCC	4 cut(s)	256, 422, 642, 814
ApeKI	GCWGC	7 cut(s)	71, 102, 152, 389, 668, 710, 734
ApoI	RAATTY	2 cut(s)	220, 559
AseI	ATTAAT	1 cut(s)	717
AspLEI	GCGC	1 cut(s)	28
AspS9I	GGNCC	3 cut(s)	257, 643, 815
AsuC2I	CCSGG	1 cut(s)	400
AvaI	CYCGRG	1 cut(s)	478
BanII	GRGCYC	2 cut(s)	195, 678
BbsI	GAAGAC	2 cut(s)	504, 602
Bbv12I	GWGCWC	2 cut(s)	195, 678
BbvI	GCAGC	7 cut(s)	58, 114, 164, 401, 680, 697, 746
BccI	CCATC	6 cut(s)	86, 313, 433, 590, 598, 796
BcnI	CCSGG	1 cut(s)	400
BcoDI	GTCTC	2 cut(s)	375, 528
BfaI	CTAG	2 cut(s)	261, 722
BfoI	RGCGCY	1 cut(s)	29
BisI	GCNGC	9 cut(s)	72, 75, 103, 153, 390, 669, 711, 735, 747
BlsI	GCNGC	9 cut(s)	73, 76, 104, 154, 391, 670, 712, 736, 748
Bme1390I	CCNGG	1 cut(s)	400
BmeT110I	CYCGRG	1 cut(s)	478
BmgT120I	GGNCC	3 cut(s)	257, 643, 815
BmiI	GGNNCC	1 cut(s)	178
BmrFI	CCNGG	1 cut(s)	400
BmrI	ACTGGG	1 cut(s)	812
BmuI	ACTGGG	1 cut(s)	812
BpiI	GAAGAC	2 cut(s)	504, 602
Bpu10I	CCTNAGC	1 cut(s)	189
BpuMI	CCSGG	1 cut(s)	400
BsaBI	GATNNNNATC	1 cut(s)	917
Bsc4I	CCNNNNNNNGG	3 cut(s)	399, 596, 745
Bse1I	ACTGG	2 cut(s)	818, 928
Bse8I	GATNNNNATC	1 cut(s)	917
BseJI	GATNNNNATC	1 cut(s)	917
BseLI	CCNNNNNNNGG	3 cut(s)	399, 596, 745
BseMII	CTCAG	5 cut(s)	180, 216, 576, 637, 661
BseNI	ACTGG	2 cut(s)	818, 928
BseRI	GAGGAG	1 cut(s)	362
BseXI	GCAGC	7 cut(s)	58, 114, 164, 401, 680, 697, 746
BsgI	GTGCAG	1 cut(s)	659
BshFI	GGCC	4 cut(s)	258, 424, 644, 816
BsiHKAI	GWGCWC	2 cut(s)	195, 678
BsiHKCI	CYCGRG	1 cut(s)	478
BsiSI	CCGG	1 cut(s)	400
BslI	CCNNNNNNNGG	3 cut(s)	399, 596, 745
BsmAI	GTCTC	2 cut(s)	375, 528
BsnI	GGCC	4 cut(s)	258, 424, 644, 816
BsoBI	CYCGRG	1 cut(s)	478
Bsp1286I	GDGCHC	2 cut(s)	195, 678
Bsp143I	GATC	4 cut(s)	184, 331, 680, 912
BspACI	CCGC	7 cut(s)	63, 69, 75, 168, 746, 889, 941
BspANI	GGCC	4 cut(s)	258, 424, 644, 816
BspCNI	CTCAG	5 cut(s)	181, 217, 577, 636, 660
BspLI	GGNNCC	1 cut(s)	178
BspPI	GGATC	4 cut(s)	179, 339, 675, 907
BsrI	ACTGG	2 cut(s)	818, 928
BssMI	GATC	4 cut(s)	184, 331, 680, 912
Bst4CI	ACNGT	3 cut(s)	111, 361, 451
Bst6I	CTCTTC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	899
BstC8I	GCNNGC	2 cut(s)	642, 891
BstDEI	CTNAG	5 cut(s)	189, 225, 585, 623, 647
BstH2I	RGCGCY	1 cut(s)	29
BstHHI	GCGC	1 cut(s)	28
BstKTI	GATC	4 cut(s)	187, 334, 683, 915
BstMAI	GTCTC	2 cut(s)	375, 528
BstMBI	GATC	4 cut(s)	184, 331, 680, 912
BstMWI	GCNNNNNNNGC	9 cut(s)	17, 62, 71, 152, 270, 395, 650, 743, 899
BstSCI	CCNGG	1 cut(s)	398
BstV1I	GCAGC	7 cut(s)	58, 114, 164, 401, 680, 697, 746
BstV2I	GAAGAC	2 cut(s)	504, 602
BstX2I	RGATCY	2 cut(s)	331, 912
BstXI	CCANNNNNNTGG	1 cut(s)	825
BstYI	RGATCY	2 cut(s)	331, 912
BsuRI	GGCC	4 cut(s)	258, 424, 644, 816
BtgZI	GCGATG	1 cut(s)	332
BtsI	GCAGTG	1 cut(s)	6
BtsIMutI	CAGTG	4 cut(s)	6, 655, 825, 921
Cac8I	GCNNGC	2 cut(s)	642, 891
CfoI	GCGC	1 cut(s)	28
Cfr13I	GGNCC	3 cut(s)	257, 643, 815
CviAII	CATG	3 cut(s)	149, 685, 799
DdeI	CTNAG	5 cut(s)	189, 225, 585, 623, 647
DpnI	GATC	4 cut(s)	186, 333, 682, 914
DpnII	GATC	4 cut(s)	184, 331, 680, 912
DraI	TTTAAA	1 cut(s)	657
Eam1104I	CTCTTC	1 cut(s)	321
EarI	CTCTTC	1 cut(s)	321
Ecl136II	GAGCTC	2 cut(s)	193, 676
Eco24I	GRGCYC	2 cut(s)	195, 678
Eco32I	GATATC	1 cut(s)	782
Eco53kI	GAGCTC	2 cut(s)	193, 676
Eco57I	CTGAAG	3 cut(s)	253, 302, 516
Eco88I	CYCGRG	1 cut(s)	478
EcoICRI	GAGCTC	2 cut(s)	193, 676
EcoO109I	RGGNCCY	1 cut(s)	643
EcoRI	GAATTC	1 cut(s)	220
EcoRV	GATATC	1 cut(s)	782
EcoT38I	GRGCYC	2 cut(s)	195, 678
FaeI	CATG	3 cut(s)	152, 688, 802
FatI	CATG	3 cut(s)	148, 684, 798
FauI	CCCGC	1 cut(s)	882
FblI	GTMKAC	1 cut(s)	404
Fnu4HI	GCNGC	9 cut(s)	72, 75, 103, 153, 390, 669, 711, 735, 747
FriOI	GRGCYC	2 cut(s)	195, 678
Fsp4HI	GCNGC	9 cut(s)	72, 75, 103, 153, 390, 669, 711, 735, 747
FspBI	CTAG	2 cut(s)	261, 722
GlaI	GCGC	1 cut(s)	27
GluI	GCNGC	9 cut(s)	72, 75, 103, 153, 390, 669, 711, 735, 747
HaeII	RGCGCY	1 cut(s)	29
HaeIII	GGCC	4 cut(s)	258, 424, 644, 816
HapII	CCGG	1 cut(s)	400
HhaI	GCGC	1 cut(s)	28
Hin1II	CATG	3 cut(s)	152, 688, 802
Hin6I	GCGC	1 cut(s)	26
HinP1I	GCGC	1 cut(s)	26
HincII	GTYRAC	3 cut(s)	310, 492, 602
HindII	GTYRAC	3 cut(s)	310, 492, 602
HinfI	GANTC	7 cut(s)	246, 368, 375, 551, 621, 725, 882
HpaII	CCGG	1 cut(s)	400
Hpy166II	GTNNAC	5 cut(s)	6, 310, 405, 492, 602
Hpy188I	TCNGA	5 cut(s)	226, 586, 595, 680, 866
Hpy188III	TCNNGA	7 cut(s)	162, 188, 372, 555, 722, 729, 777
Hpy8I	GTNNAC	5 cut(s)	6, 310, 405, 492, 602
HpyAV	CCTTC	4 cut(s)	530, 628, 688, 749
HpyCH4III	ACNGT	3 cut(s)	111, 361, 451
HpyCH4V	TGCA	5 cut(s)	152, 389, 640, 764, 908
HpyF10VI	GCNNNNNNNGC	9 cut(s)	17, 62, 71, 152, 270, 395, 650, 743, 899
HpyF3I	CTNAG	5 cut(s)	189, 225, 585, 623, 647
Hsp92II	CATG	3 cut(s)	152, 688, 802
HspAI	GCGC	1 cut(s)	26
Kzo9I	GATC	4 cut(s)	184, 331, 680, 912
LmnI	GCTCC	5 cut(s)	33, 49, 198, 681, 731
Lsp1109I	GCAGC	7 cut(s)	58, 114, 164, 401, 680, 697, 746
MaeI	CTAG	2 cut(s)	261, 722
MalI	GATC	4 cut(s)	186, 333, 682, 914
MboI	GATC	4 cut(s)	184, 331, 680, 912
MboII	GAAGA	4 cut(s)	338, 509, 560, 602
MflI	RGATCY	2 cut(s)	331, 912
MhlI	GDGCHC	2 cut(s)	195, 678
MluCI	AATT	7 cut(s)	156, 220, 485, 559, 614, 704, 894
MlyI	GAGTC	3 cut(s)	377, 615, 734
MmeI	TCCRAC	2 cut(s)	398, 555
MseI	TTAA	4 cut(s)	356, 656, 717, 791
MslI	CAYNNNNRTG	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	71
MspI	CCGG	1 cut(s)	400
MspR9I	CCNGG	1 cut(s)	400
MwoI	GCNNNNNNNGC	9 cut(s)	17, 62, 71, 152, 270, 395, 650, 743, 899
NciI	CCSGG	1 cut(s)	400
NdeII	GATC	4 cut(s)	184, 331, 680, 912
NlaIII	CATG	3 cut(s)	152, 688, 802
NlaIV	GGNNCC	1 cut(s)	178
PaeR7I	CTCGAG	1 cut(s)	478
PfeI	GAWTC	4 cut(s)	246, 375, 551, 882
PflFI	GACNNNGTC	1 cut(s)	624
PflMI	CCANNNNNTGG	1 cut(s)	596
PkrI	GCNGC	9 cut(s)	73, 76, 104, 154, 391, 670, 712, 736, 748
PleI	GAGTC	3 cut(s)	376, 615, 733
PpsI	GAGTC	3 cut(s)	376, 615, 733
PshBI	ATTAAT	1 cut(s)	717
Psp124BI	GAGCTC	2 cut(s)	195, 678
PspN4I	GGNNCC	1 cut(s)	178
PspPI	GGNCC	3 cut(s)	257, 643, 815
PspXI	VCTCGAGB	1 cut(s)	478
PsuI	RGATCY	2 cut(s)	331, 912
PsyI	GACNNNGTC	1 cut(s)	624
RseI	CAYNNNNRTG	1 cut(s)	857
SacI	GAGCTC	2 cut(s)	195, 678
SaqAI	TTAA	4 cut(s)	356, 656, 717, 791
SatI	GCNGC	9 cut(s)	72, 75, 103, 153, 390, 669, 711, 735, 747
Sau3AI	GATC	4 cut(s)	184, 331, 680, 912
Sau96I	GGNCC	3 cut(s)	257, 643, 815
SchI	GAGTC	3 cut(s)	377, 615, 734
ScrFI	CCNGG	1 cut(s)	400
SduI	GDGCHC	2 cut(s)	195, 678
Sfr274I	CTCGAG	1 cut(s)	478
SlaI	CTCGAG	1 cut(s)	478
SmiMI	CAYNNNNRTG	1 cut(s)	857
SmlI	CTYRAG	1 cut(s)	478
SmoI	CTYRAG	1 cut(s)	478
Sse9I	AATT	7 cut(s)	156, 220, 485, 559, 614, 704, 894
SsiI	CCGC	7 cut(s)	63, 69, 75, 168, 746, 889, 941
SspMI	CTAG	2 cut(s)	261, 722
SstI	GAGCTC	2 cut(s)	195, 678
StyD4I	CCNGG	1 cut(s)	398
TaaI	ACNGT	3 cut(s)	111, 361, 451
TaqI	TCGA	3 cut(s)	373, 479, 564
TasI	AATT	7 cut(s)	156, 220, 485, 559, 614, 704, 894
TauI	GCSGC	2 cut(s)	77, 749
TfiI	GAWTC	4 cut(s)	246, 375, 551, 882
Tru1I	TTAA	4 cut(s)	356, 656, 717, 791
Tru9I	TTAA	4 cut(s)	356, 656, 717, 791
TscAI	CASTG	4 cut(s)	13, 655, 825, 928
TseI	GCWGC	7 cut(s)	71, 102, 152, 389, 668, 710, 734
TspDTI	ATGAA	1 cut(s)	512
TspGWI	ACGGA	2 cut(s)	185, 905
TspRI	CASTG	4 cut(s)	13, 655, 825, 928
Tth111I	GACNNNGTC	1 cut(s)	624
Van91I	CCANNNNNTGG	1 cut(s)	596
VspI	ATTAAT	1 cut(s)	717
XapI	RAATTY	2 cut(s)	220, 559
XbaI	TCTAGA	1 cut(s)	721
XhoI	CTCGAG	1 cut(s)	478
XmiI	GTMKAC	1 cut(s)	404
XspI	CTAG	2 cut(s)	261, 722

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.