RLG00000005513

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0011234
Physical Location & Seq
Reverse (-)
68207675 .. 68211287
3613 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000005513

Sequence Viewer

Length: 957 bp
ATGTCCGCTGCCTCATCAGCTCTGACACTCCGCCTCCCCTTCGCTTCCTCAATCACCACCACTAAGCTCATTTATCCGATATGCAACTCACGTCGGTCTATAAGCAGTTTGAGGCTTGTGGGTTGCGCTCGTGCTGCCATTTCAAGCCAAGCGCAAGGTACATTTGATCCTGAACTCCGTTTAGTACTTGAACTTGCCACTGATTCTGAGTTATATGAGATTGAAAGAATCCTTTTTGGCCCCAGCTACTTCAGCCCTTTGCTGAAATCCATAATGAGCAGAACCAACGTCGACTATGCAATGATTGAAGAGGATCTTGAGGAGCGAGATCAGTTTTTATCAGCATTAGAGTCGCGATTCTTATTCCTCGCAGCGGATGCTCGGTCCACAATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTTAGAAAAGAGTTGAACATTCCTTGCTCAAGCAAATTATCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTGTTGCGAGACTACTCAAGTGAAGAATCAGGAAGTTTTGAGGGCTTGCTAGAATTCTCTGAGCCGTCAGATGCTGAAAACAGTCTTGAACTTGGACTCAGTCAATGGAAGGTGCAGGCCCTCACTGCTTTAAAAGTTGGGGCAGCGGAACTCCGATCAATGTTTTTAAAGGGTGGTGGTATCCTTACTCTGGCAAAGATCTATCAATTGTTAGCTAGGAAGTTATCTGGGAAGGTGTTCTTAGAAGCTGCCAAGTATCAACTGAAGAGGGATGTTGTTAGAAAGGGTGGACAATTAGCAGCTATTAATCTAGAATCCAGAGTGGCCTTGCTAGCTGCAAAACAAGGTTTTGCAGGGGCTACATCAAGATATCTTGGCTTGAGAAGCATGATGTCGTTACTTGGCCCAATACGCATCACTCGCACTTATGGATCACCGGTTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

319

Amino Acids

35.12

Weight (kDa)

8.67

Isoelectric Point (pI)

53.2

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 291
AccII CGCG 1 cut(s) 355
AciI CCGC 4 cut(s) 6, 31, 374, 653
AclWI GGATC 3 cut(s) 161, 321, 946
AcsI RAATTY 1 cut(s) 560
AcuI CTGAAG 3 cut(s) 235, 498, 791
AfaI GTAC 2 cut(s) 160, 186
AfiI CCNNNNNNNGG 3 cut(s) 373, 393, 697
AgeI ACCGGT 1 cut(s) 943
AgsI TTSAA 7 cut(s) 144, 191, 224, 308, 448, 488, 596
AjiI CACGTC 1 cut(s) 92
AluBI AGCT 7 cut(s) 20, 67, 246, 722, 755, 809, 842
AluI AGCT 7 cut(s) 20, 67, 246, 722, 755, 809, 842
Alw26I GTCTC 1 cut(s) 510
AlwI GGATC 3 cut(s) 161, 321, 946
AlwNI CAGNNNCTG 1 cut(s) 581
AoxI GGCC 5 cut(s) 238, 404, 624, 831, 910
ApeKI GCWGC 7 cut(s) 8, 134, 371, 650, 755, 806, 842
ApoI RAATTY 1 cut(s) 560
AseI ATTAAT 1 cut(s) 813
AsiGI ACCGGT 1 cut(s) 943
Asp700I GAANNNNTTC 1 cut(s) 743
AspLEI GCGC 2 cut(s) 128, 154
AspS9I GGNCC 4 cut(s) 239, 384, 625, 911
AsuHPI GGTGA 2 cut(s) 46, 933
AsuNHI GCTAGC 1 cut(s) 838
AvaII GGWCC 1 cut(s) 384
BauI CACGAG 1 cut(s) 129
BbsI GAAGAC 1 cut(s) 486
BbvI GCAGC 6 cut(s) 121, 383, 662, 742, 818, 829
BccI CCATC 1 cut(s) 415
BceAI ACGGC 1 cut(s) 556
BcgI CGANNNNNNTGC 2 cut(s) 333, 367
BciVI GTATCC 1 cut(s) 698
BcoDI GTCTC 1 cut(s) 510
BfaI CTAG 4 cut(s) 557, 723, 818, 839
BfuI GTATCC 1 cut(s) 698
BglII AGATCT 1 cut(s) 705
BisI GCNGC 7 cut(s) 9, 135, 372, 651, 756, 807, 843
BlsI GCNGC 7 cut(s) 10, 136, 373, 652, 757, 808, 844
BmcAI AGTACT 1 cut(s) 186
Bme18I GGWCC 1 cut(s) 384
BmgBI CACGTC 1 cut(s) 92
BmgT120I GGNCC 4 cut(s) 239, 384, 625, 911
BmiI GGNNCC 1 cut(s) 241
BmsI GCATC 3 cut(s) 367, 568, 930
BmtI GCTAGC 1 cut(s) 842
BpiI GAAGAC 1 cut(s) 486
BpuEI CTTGAG 4 cut(s) 338, 445, 508, 907
BsaWI WCCGGW 1 cut(s) 943
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 373, 393, 697
Bse118I RCCGGY 1 cut(s) 943
Bse3DI GCAATG 1 cut(s) 306
BseGI GGATG 2 cut(s) 382, 784
BseLI CCNNNNNNNGG 3 cut(s) 373, 393, 697
BseMI GCAATG 1 cut(s) 306
BseMII CTCAG 3 cut(s) 198, 558, 619
BseRI GAGGAG 1 cut(s) 335
BseXI GCAGC 6 cut(s) 121, 383, 662, 742, 818, 829
BseYI CCCAGC 1 cut(s) 242
BsgI GTGCAG 1 cut(s) 641
Bsh1236I CGCG 1 cut(s) 355
BshFI GGCC 5 cut(s) 240, 406, 626, 833, 912
BshTI ACCGGT 1 cut(s) 943
BsiSI CCGG 1 cut(s) 944
BslI CCNNNNNNNGG 3 cut(s) 373, 393, 697
BsmAI GTCTC 1 cut(s) 510
BsnI GGCC 5 cut(s) 240, 406, 626, 833, 912
Bsp143I GATC 6 cut(s) 166, 313, 328, 662, 705, 938
Bsp68I TCGCGA 1 cut(s) 355
BspACI CCGC 4 cut(s) 6, 31, 374, 653
BspANI GGCC 5 cut(s) 240, 406, 626, 833, 912
BspCNI CTCAG 3 cut(s) 199, 559, 618
BspFNI CGCG 1 cut(s) 355
BspLI GGNNCC 1 cut(s) 241
BspOI GCTAGC 1 cut(s) 842
BspPI GGATC 3 cut(s) 161, 321, 946
BsrDI GCAATG 1 cut(s) 306
BsrFI RCCGGY 1 cut(s) 943
BssAI RCCGGY 1 cut(s) 943
BssMI GATC 6 cut(s) 166, 313, 328, 662, 705, 938
BssSI CACGAG 1 cut(s) 129
Bst2BI CACGAG 1 cut(s) 129
Bst4CI ACNGT 1 cut(s) 590
Bst6I CTCTTC 2 cut(s) 303, 767
BstAPI GCANNNNNTGC 1 cut(s) 377
BstC8I GCNNGC 4 cut(s) 429, 554, 624, 840
BstDEI CTNAG 5 cut(s) 63, 207, 567, 605, 748
BstF5I GGATG 2 cut(s) 382, 784
BstFNI CGCG 1 cut(s) 355
BstHHI GCGC 2 cut(s) 128, 154
BstKTI GATC 6 cut(s) 169, 316, 331, 665, 708, 941
BstMAI GTCTC 1 cut(s) 510
BstMBI GATC 6 cut(s) 166, 313, 328, 662, 705, 938
BstMWI GCNNNNNNNGC 9 cut(s) 17, 134, 252, 377, 632, 839, 891, 918, 927
BstUI CGCG 1 cut(s) 355
BstV1I GCAGC 6 cut(s) 121, 383, 662, 742, 818, 829
BstV2I GAAGAC 1 cut(s) 486
BstX2I RGATCY 2 cut(s) 313, 705
BstYI RGATCY 2 cut(s) 313, 705
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 5 cut(s) 240, 406, 626, 833, 912
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 2 cut(s) 382, 784
BtsI GCAGTG 1 cut(s) 630
BtsIMutI CAGTG 2 cut(s) 198, 630
BtuMI TCGCGA 1 cut(s) 355
Cac8I GCNNGC 4 cut(s) 429, 554, 624, 840
CaiI CAGNNNCTG 1 cut(s) 581
CfoI GCGC 2 cut(s) 128, 154
Cfr10I RCCGGY 1 cut(s) 943
Cfr13I GGNCC 4 cut(s) 239, 384, 625, 911
Csp6I GTAC 2 cut(s) 159, 185
CspAI ACCGGT 1 cut(s) 943
CviAII CATG 1 cut(s) 895
CviQI GTAC 2 cut(s) 159, 185
DdeI CTNAG 5 cut(s) 63, 207, 567, 605, 748
DpnI GATC 6 cut(s) 168, 315, 330, 664, 707, 940
DpnII GATC 6 cut(s) 166, 313, 328, 662, 705, 938
DraI TTTAAA 2 cut(s) 639, 675
Eam1104I CTCTTC 2 cut(s) 303, 767
EarI CTCTTC 2 cut(s) 303, 767
EciI GGCGGA 1 cut(s) 20
Eco32I GATATC 1 cut(s) 878
Eco47I GGWCC 1 cut(s) 384
Eco57I CTGAAG 3 cut(s) 235, 498, 791
EcoO109I RGGNCCY 1 cut(s) 625
EcoRI GAATTC 1 cut(s) 560
EcoRV GATATC 1 cut(s) 878
FaeI CATG 1 cut(s) 898
FalI AAGNNNNNCTT 4 cut(s) 300, 332, 731, 763
FatI CATG 1 cut(s) 894
FblI GTMKAC 1 cut(s) 291
Fnu4HI GCNGC 7 cut(s) 9, 135, 372, 651, 756, 807, 843
FokI GGATG 2 cut(s) 389, 791
Fsp4HI GCNGC 7 cut(s) 9, 135, 372, 651, 756, 807, 843
FspBI CTAG 4 cut(s) 557, 723, 818, 839
GlaI GCGC 2 cut(s) 127, 153
GluI GCNGC 7 cut(s) 9, 135, 372, 651, 756, 807, 843
GsaI CCCAGC 1 cut(s) 246
HaeIII GGCC 5 cut(s) 240, 406, 626, 833, 912
HapII CCGG 1 cut(s) 944
HhaI GCGC 2 cut(s) 128, 154
Hin1II CATG 1 cut(s) 898
Hin6I GCGC 2 cut(s) 126, 152
HinP1I GCGC 2 cut(s) 126, 152
HincII GTYRAC 1 cut(s) 292
HindII GTYRAC 1 cut(s) 292
HinfI GANTC 7 cut(s) 203, 228, 350, 357, 533, 603, 821
HpaII CCGG 1 cut(s) 944
HphI GGTGA 2 cut(s) 46, 933
Hpy166II GTNNAC 3 cut(s) 292, 387, 797
Hpy188I TCNGA 6 cut(s) 24, 78, 208, 568, 577, 662
Hpy188III TCNNGA 8 cut(s) 170, 317, 354, 537, 593, 818, 825, 873
Hpy8I GTNNAC 3 cut(s) 292, 387, 797
Hpy99I CGWCG 2 cut(s) 96, 293
HpyAV CCTTC 4 cut(s) 49, 512, 610, 733
HpyCH4III ACNGT 1 cut(s) 590
HpyCH4IV ACGT 2 cut(s) 91, 288
HpyCH4V TGCA 6 cut(s) 84, 299, 431, 622, 845, 860
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 134, 252, 377, 632, 839, 891, 918, 927
HpyF3I CTNAG 5 cut(s) 63, 207, 567, 605, 748
HpySE526I ACGT 2 cut(s) 91, 288
Hsp92II CATG 1 cut(s) 898
HspAI GCGC 2 cut(s) 126, 152
Kzo9I GATC 6 cut(s) 166, 313, 328, 662, 705, 938
LmnI GCTCC 1 cut(s) 322
LpnPI CCDG 8 cut(s) 183, 256, 522, 608, 683, 720, 838, 846
Lsp1109I GCAGC 6 cut(s) 121, 383, 662, 742, 818, 829
LweI GCATC 3 cut(s) 367, 568, 930
MaeI CTAG 4 cut(s) 557, 723, 818, 839
MaeII ACGT 2 cut(s) 91, 288
MaeIII GTNAC 1 cut(s) 903
MalI GATC 6 cut(s) 168, 315, 330, 664, 707, 940
MboI GATC 6 cut(s) 166, 313, 328, 662, 705, 938
MboII GAAGA 4 cut(s) 320, 491, 542, 784
MfeI CAATTG 1 cut(s) 713
MflI RGATCY 2 cut(s) 313, 705
MluCI AATT 4 cut(s) 467, 560, 713, 800
MlyI GAGTC 2 cut(s) 359, 597
MmeI TCCRAC 1 cut(s) 380
MroXI GAANNNNTTC 1 cut(s) 743
MseI TTAA 3 cut(s) 638, 674, 813
MspA1I CMGCKG 3 cut(s) 8, 374, 653
MspI CCGG 1 cut(s) 944
MunI CAATTG 1 cut(s) 713
MvnI CGCG 1 cut(s) 355
MwoI GCNNNNNNNGC 9 cut(s) 17, 134, 252, 377, 632, 839, 891, 918, 927
NdeII GATC 6 cut(s) 166, 313, 328, 662, 705, 938
NheI GCTAGC 1 cut(s) 838
NlaIII CATG 1 cut(s) 898
NlaIV GGNNCC 1 cut(s) 241
NruI TCGCGA 1 cut(s) 355
PdmI GAANNNNTTC 1 cut(s) 743
PfeI GAWTC 5 cut(s) 203, 228, 357, 533, 821
PflFI GACNNNGTC 1 cut(s) 606
PinAI ACCGGT 1 cut(s) 943
PkrI GCNGC 7 cut(s) 10, 136, 373, 652, 757, 808, 844
PleI GAGTC 2 cut(s) 358, 597
PpsI GAGTC 2 cut(s) 358, 597
PshBI ATTAAT 1 cut(s) 813
PspFI CCCAGC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 241
PspPI GGNCC 4 cut(s) 239, 384, 625, 911
PstNI CAGNNNCTG 1 cut(s) 581
PsuI RGATCY 2 cut(s) 313, 705
PsyI GACNNNGTC 1 cut(s) 606
RruI TCGCGA 1 cut(s) 355
RsaI GTAC 2 cut(s) 160, 186
RsaNI GTAC 2 cut(s) 159, 185
SalI GTCGAC 1 cut(s) 290
SaqAI TTAA 3 cut(s) 638, 674, 813
SatI GCNGC 7 cut(s) 9, 135, 372, 651, 756, 807, 843
Sau3AI GATC 6 cut(s) 166, 313, 328, 662, 705, 938
Sau96I GGNCC 4 cut(s) 239, 384, 625, 911
ScaI AGTACT 1 cut(s) 186
SchI GAGTC 2 cut(s) 359, 597
SfaNI GCATC 3 cut(s) 367, 568, 930
SinI GGWCC 1 cut(s) 384
SmlI CTYRAG 4 cut(s) 317, 460, 523, 886
SmoI CTYRAG 4 cut(s) 317, 460, 523, 886
Sse9I AATT 4 cut(s) 467, 560, 713, 800
SsiI CCGC 4 cut(s) 6, 31, 374, 653
SspMI CTAG 4 cut(s) 557, 723, 818, 839
TaaI ACNGT 1 cut(s) 590
TaiI ACGT 2 cut(s) 94, 291
TaqI TCGA 1 cut(s) 291
TaqII GACCGA 2 cut(s) 84, 372
TasI AATT 4 cut(s) 467, 560, 713, 800
TatI WGTACW 1 cut(s) 184
TfiI GAWTC 5 cut(s) 203, 228, 357, 533, 821
Tru1I TTAA 3 cut(s) 638, 674, 813
Tru9I TTAA 3 cut(s) 638, 674, 813
TscAI CASTG 2 cut(s) 205, 637
TseI GCWGC 7 cut(s) 8, 134, 371, 650, 755, 806, 842
TspDTI ATGAA 1 cut(s) 494
TspGWI ACGGA 1 cut(s) 167
TspRI CASTG 2 cut(s) 205, 637
Tth111I GACNNNGTC 1 cut(s) 606
VpaK11BI GGWCC 1 cut(s) 384
VspI ATTAAT 1 cut(s) 813
XapI RAATTY 1 cut(s) 560
XbaI TCTAGA 1 cut(s) 817
XmiI GTMKAC 1 cut(s) 291
XmnI GAANNNNTTC 1 cut(s) 743
XspI CTAG 4 cut(s) 557, 723, 818, 839
ZrmI AGTACT 1 cut(s) 186
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.