Rh7BG008100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011234
Physical Location & Seq
Forward (+)
489251 .. 491916
2666 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG008100.1

Sequence Viewer

Length: 972 bp
ATGTCCGCTGCCTCATCAGCTCTGACACTCCGCCTCCCCTTCGCTTCCTCAATCACCACCACCACCACTAAGCTCATTTATCCGATATGCAGCTCACGTCGGTCTATAAGCAGAACTTTGAGGCTTGTGGGTTGCGCTCGTGCTGCCATTTCAAGCCAAGCGCAAGGTACATTTGATCCTGAACTCCGTTTAGTACTTGAACTTGCCACTGATTCTGAGTTATATGAGATTGAAAGAATCCTTTTTGGCCCTAGCTACTTCAGCCCTTTGCTGAAATCCATAATGAGCAGAACCAACGTCGACTATGCAATGATTGAAGAGGATCTTGAGGAGCGAGATCAGTTTTTATCAGCATTAGAGTCGCGATTCTTATTCCTCGCAGCGGATGCTCGGTCCACAATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTTAGAAAAGAGTTGAACATTCCCTGCTCAAGCAAATTATCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTGTTGCGAGACTACTCAAGTGAAGAATCAGGAAGTTTCGAGGGCTTGCTAGAATTCTCTGAGCCGTCAGATGCTGAAAACAGTCTTGAACTTGGACTCAGTCAATGGAAGGTGCAGGCCCTCACTGCTTTAAAAGTTGGGGCAGCGGAACTCCGATCAATGTTTTTAAAGGGTGGTGGTATCCTTACTCTGGCAAAGATCTATCAATTGTTAGCTAGGAAGTTATCTGGGAAGGTGTTCTTAGAAGCTGCCAACTATCAACTGAAAAGGGATGTTGTTAGAAAGGTACTTTTTTGTCTTTGTATGTGTGATCTTGTTCTAATTTTTGTTTCTATTTTGGAACATATACAGTTTGTACACGTGTGTAACACACTCCCCAGAATTTTGCAATATCTTATGCTCCGTCGAAAATTTCTTCTCAGTACCAGACTATTGAGAGAGGGACAGAAGGGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

323

Amino Acids

36.43

Weight (kDa)

8.63

Isoelectric Point (pI)

54.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 364
AciI CCGC 4 cut(s) 6, 31, 383, 662
AclWI GGATC 2 cut(s) 170, 330
AcsI RAATTY 3 cut(s) 569, 897, 926
AcuI CTGAAG 2 cut(s) 244, 507
AcvI CACGTG 1 cut(s) 877
AfaI GTAC 5 cut(s) 169, 195, 804, 873, 940
AfiI CCNNNNNNNGG 3 cut(s) 382, 402, 706
AflIII ACRYGT 2 cut(s) 874, 876
AgsI TTSAA 7 cut(s) 153, 200, 233, 317, 457, 497, 605
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 6 cut(s) 20, 73, 93, 255, 731, 764
AluI AGCT 6 cut(s) 20, 73, 93, 255, 731, 764
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 2 cut(s) 170, 330
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 3 cut(s) 247, 413, 633
ApeKI GCWGC 6 cut(s) 8, 90, 143, 380, 659, 764
ApoI RAATTY 3 cut(s) 569, 897, 926
Asp700I GAANNNNTTC 1 cut(s) 752
AspLEI GCGC 2 cut(s) 137, 163
AspS9I GGNCC 3 cut(s) 248, 393, 634
AsuHPI GGTGA 1 cut(s) 46
AvaII GGWCC 1 cut(s) 393
BauI CACGAG 1 cut(s) 138
BbrPI CACGTG 1 cut(s) 877
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 5 cut(s) 102, 130, 392, 671, 751
BccI CCATC 1 cut(s) 424
BceAI ACGGC 1 cut(s) 565
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciVI GTATCC 1 cut(s) 707
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 3 cut(s) 252, 566, 732
BfuI GTATCC 1 cut(s) 707
BglII AGATCT 1 cut(s) 714
BisI GCNGC 6 cut(s) 9, 91, 144, 381, 660, 765
BlsI GCNGC 6 cut(s) 10, 92, 145, 382, 661, 766
BmcAI AGTACT 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 248, 393, 634
BmsI GCATC 2 cut(s) 376, 577
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 3 cut(s) 347, 454, 517
BsaAI YACGTR 1 cut(s) 877
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 402, 706
Bse3DI GCAATG 1 cut(s) 315
BseGI GGATG 2 cut(s) 391, 793
BseLI CCNNNNNNNGG 3 cut(s) 382, 402, 706
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 4 cut(s) 207, 567, 628, 949
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 5 cut(s) 102, 130, 392, 671, 751
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 3 cut(s) 249, 415, 635
BslI CCNNNNNNNGG 3 cut(s) 382, 402, 706
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 3 cut(s) 249, 415, 635
Bsp1407I TGTACA 1 cut(s) 871
Bsp143I GATC 6 cut(s) 175, 322, 337, 671, 714, 826
Bsp68I TCGCGA 1 cut(s) 364
BspACI CCGC 4 cut(s) 6, 31, 383, 662
BspANI GGCC 3 cut(s) 249, 415, 635
BspCNI CTCAG 4 cut(s) 208, 568, 627, 948
BspFNI CGCG 1 cut(s) 364
BspPI GGATC 2 cut(s) 170, 330
BsrDI GCAATG 1 cut(s) 315
BsrGI TGTACA 1 cut(s) 871
BssMI GATC 6 cut(s) 175, 322, 337, 671, 714, 826
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 599, 867
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 1 cut(s) 386
BstAUI TGTACA 1 cut(s) 871
BstBAI YACGTR 1 cut(s) 877
BstC8I GCNNGC 3 cut(s) 438, 563, 633
BstDEI CTNAG 6 cut(s) 69, 216, 576, 614, 757, 935
BstF5I GGATG 2 cut(s) 391, 793
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 2 cut(s) 137, 163
BstKTI GATC 6 cut(s) 178, 325, 340, 674, 717, 829
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 6 cut(s) 175, 322, 337, 671, 714, 826
BstMWI GCNNNNNNNGC 5 cut(s) 17, 143, 261, 386, 641
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 5 cut(s) 102, 130, 392, 671, 751
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 322, 714
BstYI RGATCY 2 cut(s) 322, 714
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 3 cut(s) 249, 415, 635
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 2 cut(s) 391, 793
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 2 cut(s) 207, 639
BtuMI TCGCGA 1 cut(s) 364
Cac8I GCNNGC 3 cut(s) 438, 563, 633
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 2 cut(s) 137, 163
Cfr13I GGNCC 3 cut(s) 248, 393, 634
Csp6I GTAC 5 cut(s) 168, 194, 803, 872, 939
CviQI GTAC 5 cut(s) 168, 194, 803, 872, 939
DdeI CTNAG 6 cut(s) 69, 216, 576, 614, 757, 935
DpnI GATC 6 cut(s) 177, 324, 339, 673, 716, 828
DpnII GATC 6 cut(s) 175, 322, 337, 671, 714, 826
DraI TTTAAA 2 cut(s) 648, 684
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 244, 507
Eco72I CACGTG 1 cut(s) 877
EcoO109I RGGNCCY 1 cut(s) 634
EcoRI GAATTC 1 cut(s) 569
FalI AAGNNNNNCTT 6 cut(s) 100, 132, 309, 341, 740, 772
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 6 cut(s) 9, 91, 144, 381, 660, 765
FokI GGATG 2 cut(s) 398, 800
Fsp4HI GCNGC 6 cut(s) 9, 91, 144, 381, 660, 765
FspBI CTAG 3 cut(s) 252, 566, 732
GlaI GCGC 2 cut(s) 136, 162
GluI GCNGC 6 cut(s) 9, 91, 144, 381, 660, 765
HaeIII GGCC 3 cut(s) 249, 415, 635
HhaI GCGC 2 cut(s) 137, 163
Hin6I GCGC 2 cut(s) 135, 161
HinP1I GCGC 2 cut(s) 135, 161
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 6 cut(s) 212, 237, 359, 366, 542, 612
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 301, 396, 874
Hpy188I TCNGA 6 cut(s) 24, 84, 217, 577, 586, 671
Hpy188III TCNNGA 5 cut(s) 179, 326, 363, 546, 602
Hpy8I GTNNAC 3 cut(s) 301, 396, 874
Hpy99I CGWCG 3 cut(s) 102, 302, 924
HpyAV CCTTC 5 cut(s) 49, 521, 619, 742, 958
HpyCH4III ACNGT 2 cut(s) 599, 867
HpyCH4IV ACGT 3 cut(s) 97, 297, 876
HpyCH4V TGCA 5 cut(s) 90, 308, 440, 631, 904
HpyF10VI GCNNNNNNNGC 5 cut(s) 17, 143, 261, 386, 641
HpyF3I CTNAG 6 cut(s) 69, 216, 576, 614, 757, 935
HpySE526I ACGT 3 cut(s) 97, 297, 876
HspAI GCGC 2 cut(s) 135, 161
Kzo9I GATC 6 cut(s) 175, 322, 337, 671, 714, 826
LmnI GCTCC 2 cut(s) 331, 921
LpnPI CCDG 8 cut(s) 192, 478, 531, 617, 692, 729, 907, 955
Lsp1109I GCAGC 5 cut(s) 102, 130, 392, 671, 751
LweI GCATC 2 cut(s) 376, 577
MaeI CTAG 3 cut(s) 252, 566, 732
MaeII ACGT 3 cut(s) 97, 297, 876
MaeIII GTNAC 1 cut(s) 881
MalI GATC 6 cut(s) 177, 324, 339, 673, 716, 828
MboI GATC 6 cut(s) 175, 322, 337, 671, 714, 826
MboII GAAGA 4 cut(s) 329, 500, 551, 923
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 2 cut(s) 322, 714
MluCI AATT 6 cut(s) 476, 569, 722, 837, 897, 926
MlyI GAGTC 2 cut(s) 368, 606
MmeI TCCRAC 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 2 cut(s) 647, 683
MspA1I CMGCKG 3 cut(s) 8, 383, 662
MunI CAATTG 1 cut(s) 722
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 5 cut(s) 17, 143, 261, 386, 641
NdeII GATC 6 cut(s) 175, 322, 337, 671, 714, 826
NruI TCGCGA 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 4 cut(s) 212, 237, 366, 542
PflFI GACNNNGTC 1 cut(s) 615
PkrI GCNGC 6 cut(s) 10, 92, 145, 382, 661, 766
PleI GAGTC 2 cut(s) 367, 606
PmaCI CACGTG 1 cut(s) 877
PmlI CACGTG 1 cut(s) 877
PpsI GAGTC 2 cut(s) 367, 606
Ppu21I YACGTR 1 cut(s) 877
PspCI CACGTG 1 cut(s) 877
PspPI GGNCC 3 cut(s) 248, 393, 634
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 322, 714
PsyI GACNNNGTC 1 cut(s) 615
RruI TCGCGA 1 cut(s) 364
RsaI GTAC 5 cut(s) 169, 195, 804, 873, 940
RsaNI GTAC 5 cut(s) 168, 194, 803, 872, 939
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 2 cut(s) 647, 683
SatI GCNGC 6 cut(s) 9, 91, 144, 381, 660, 765
Sau3AI GATC 6 cut(s) 175, 322, 337, 671, 714, 826
Sau96I GGNCC 3 cut(s) 248, 393, 634
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 2 cut(s) 368, 606
SfaNI GCATC 2 cut(s) 376, 577
SinI GGWCC 1 cut(s) 393
SmlI CTYRAG 3 cut(s) 326, 469, 532
SmoI CTYRAG 3 cut(s) 326, 469, 532
Sse9I AATT 6 cut(s) 476, 569, 722, 837, 897, 926
SsiI CCGC 4 cut(s) 6, 31, 383, 662
SspMI CTAG 3 cut(s) 252, 566, 732
TaaI ACNGT 2 cut(s) 599, 867
TaiI ACGT 3 cut(s) 100, 300, 879
TaqI TCGA 3 cut(s) 300, 555, 922
TaqII GACCGA 2 cut(s) 90, 381
TasI AATT 6 cut(s) 476, 569, 722, 837, 897, 926
TatI WGTACW 2 cut(s) 193, 871
TfiI GAWTC 4 cut(s) 212, 237, 366, 542
Tru1I TTAA 2 cut(s) 647, 683
Tru9I TTAA 2 cut(s) 647, 683
TscAI CASTG 2 cut(s) 214, 646
TseI GCWGC 6 cut(s) 8, 90, 143, 380, 659, 764
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 2 cut(s) 176, 908
TspRI CASTG 2 cut(s) 214, 646
Tth111I GACNNNGTC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 393
XapI RAATTY 3 cut(s) 569, 897, 926
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 3 cut(s) 252, 566, 732
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.