Rw7G000680

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0011234
Physical Location & Seq
Forward (+)
559008 .. 562631
3624 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G000680.1

Sequence Viewer

Length: 1059 bp
ATGTCCGCTGCCTCATCAGCTCTGACACTCCGCCTCCCCTTCGCTTCCTCAATCACCACCACCACCACCACTAAGCTCATTTATCCGATATGCAGCTCACGTCGGTCTATAAGCAGTTTGAGGCTTGTGGGTTGCGCTCGTGCTGCCATTTCAAGCCAAGCGCAAGGTACATTTGATCCTGAACTCCGTTTAGTACTTGAACTTGCCACTGATTCTGAGTTATATGAGATTGAAAGAATCCTTTTTGGCCCTAGCTACTTCAGCCCTTTGCTGAAATCCATAATGAGCAGAACCAACGTCGACTATGCAATGATTGAAGAGGATCTTGAGGAGCGAGATCAGTTTTTAGCAGCATTAGAGTCGCGATTCTTATTCCTCGCAGCGGATGCTCGGTCCACAATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTTAGAAAAGAGTTGAACATTCCTTGCTCAAGCAAATTATCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTGTTGCGAGACTACTCAAGTGAAGAATCAGGAAGTTTCGAGGGCTTGCTAGAATTCTCTGAGCCGTCAGATGCTGAAAACAGTCTTGAACTTGGACTCAGTCAATGGAAGGTGCAGGCCCTCACTGCTTTAAAAGTTGGGGCAGCGGAACTCCGATCAATGTTTTTAAAGGGTGGTGGTATCCTTACTCTGGCAAAGATCTATCAATTGTTAGCTAGGAAGTTATCTGGGAAGGTGTTCTTAGAAGCTGCCAACTATCAACTGAAAAGGGATGTTGTTAGAAAGGGTGGACAATTAGCAGCTATTAATCTAGAATCCAGAGTGGCCTTGCTAGCTGCAAAACAAGGTTTTGCAGGGGCTACATCAAGATATCTTGGCTTGAGAAGCATGATGTCGTTACTTGGCCCAGTGCTTTGGGGAACATTTCTGGCGGATGTTGTCATTCAAATGCTAGGAACCGATTATGCAAGAATTTTGCGAGCAATTTATGCTTTTGCACAGATACGCATCACTCGCACTTATGGGTCACCGGTTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

352

Amino Acids

38.87

Weight (kDa)

8.33

Isoelectric Point (pI)

52.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 300
AccII CGCG 1 cut(s) 364
AciI CCGC 5 cut(s) 6, 31, 383, 662, 947
AclWI GGATC 2 cut(s) 170, 330
AcsI RAATTY 2 cut(s) 569, 987
AcuI CTGAAG 2 cut(s) 244, 507
AfaI GTAC 2 cut(s) 169, 195
AfiI CCNNNNNNNGG 3 cut(s) 382, 402, 706
AgeI ACCGGT 1 cut(s) 1045
AgsI TTSAA 8 cut(s) 153, 200, 233, 317, 457, 497, 605, 962
AjiI CACGTC 1 cut(s) 101
AluBI AGCT 8 cut(s) 20, 76, 96, 255, 731, 764, 818, 851
AluI AGCT 8 cut(s) 20, 76, 96, 255, 731, 764, 818, 851
Alw26I GTCTC 1 cut(s) 519
AlwI GGATC 2 cut(s) 170, 330
AlwNI CAGNNNCTG 1 cut(s) 590
AoxI GGCC 5 cut(s) 247, 413, 633, 840, 919
ApeKI GCWGC 9 cut(s) 8, 93, 143, 350, 380, 659, 764, 815, 851
ApoI RAATTY 2 cut(s) 569, 987
AseI ATTAAT 1 cut(s) 822
AsiGI ACCGGT 1 cut(s) 1045
Asp700I GAANNNNTTC 1 cut(s) 752
AspLEI GCGC 2 cut(s) 137, 163
AspS9I GGNCC 4 cut(s) 248, 393, 634, 920
AsuHPI GGTGA 2 cut(s) 46, 1035
AsuNHI GCTAGC 1 cut(s) 847
AvaII GGWCC 1 cut(s) 393
BauI CACGAG 1 cut(s) 138
BbsI GAAGAC 1 cut(s) 495
BbvI GCAGC 8 cut(s) 105, 130, 362, 392, 671, 751, 827, 838
BccI CCATC 1 cut(s) 424
BceAI ACGGC 1 cut(s) 565
BcgI CGANNNNNNTGC 2 cut(s) 342, 376
BciVI GTATCC 1 cut(s) 707
BcoDI GTCTC 1 cut(s) 519
BfaI CTAG 6 cut(s) 252, 566, 732, 827, 848, 968
BfuI GTATCC 1 cut(s) 707
BglII AGATCT 1 cut(s) 714
BisI GCNGC 9 cut(s) 9, 94, 144, 351, 381, 660, 765, 816, 852
BlsI GCNGC 9 cut(s) 10, 95, 145, 352, 382, 661, 766, 817, 853
BmcAI AGTACT 1 cut(s) 195
Bme18I GGWCC 1 cut(s) 393
BmgBI CACGTC 1 cut(s) 101
BmgT120I GGNCC 4 cut(s) 248, 393, 634, 920
BmiI GGNNCC 1 cut(s) 973
BmrI ACTGGG 1 cut(s) 917
BmsI GCATC 3 cut(s) 376, 577, 1032
BmtI GCTAGC 1 cut(s) 851
BmuI ACTGGG 1 cut(s) 917
BpiI GAAGAC 1 cut(s) 495
BpuEI CTTGAG 4 cut(s) 347, 454, 517, 916
BsaBI GATNNNNATC 1 cut(s) 1022
BsaWI WCCGGW 1 cut(s) 1045
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 382, 402, 706
Bse118I RCCGGY 1 cut(s) 1045
Bse1I ACTGG 1 cut(s) 923
Bse3DI GCAATG 1 cut(s) 315
Bse8I GATNNNNATC 1 cut(s) 1022
BseGI GGATG 3 cut(s) 391, 793, 955
BseJI GATNNNNATC 1 cut(s) 1022
BseLI CCNNNNNNNGG 3 cut(s) 382, 402, 706
BseMI GCAATG 1 cut(s) 315
BseMII CTCAG 3 cut(s) 207, 567, 628
BseNI ACTGG 1 cut(s) 923
BseRI GAGGAG 1 cut(s) 344
BseXI GCAGC 8 cut(s) 105, 130, 362, 392, 671, 751, 827, 838
BsgI GTGCAG 1 cut(s) 650
Bsh1236I CGCG 1 cut(s) 364
BshFI GGCC 5 cut(s) 249, 415, 635, 842, 921
BshTI ACCGGT 1 cut(s) 1045
BsiSI CCGG 1 cut(s) 1046
BslI CCNNNNNNNGG 3 cut(s) 382, 402, 706
BsmAI GTCTC 1 cut(s) 519
BsnI GGCC 5 cut(s) 249, 415, 635, 842, 921
Bsp143I GATC 5 cut(s) 175, 322, 337, 671, 714
Bsp68I TCGCGA 1 cut(s) 364
BspACI CCGC 5 cut(s) 6, 31, 383, 662, 947
BspANI GGCC 5 cut(s) 249, 415, 635, 842, 921
BspCNI CTCAG 3 cut(s) 208, 568, 627
BspFNI CGCG 1 cut(s) 364
BspLI GGNNCC 1 cut(s) 973
BspOI GCTAGC 1 cut(s) 851
BspPI GGATC 2 cut(s) 170, 330
BsrDI GCAATG 1 cut(s) 315
BsrFI RCCGGY 1 cut(s) 1045
BsrI ACTGG 1 cut(s) 923
BssAI RCCGGY 1 cut(s) 1045
BssMI GATC 5 cut(s) 175, 322, 337, 671, 714
BssSI CACGAG 1 cut(s) 138
Bst2BI CACGAG 1 cut(s) 138
Bst4CI ACNGT 1 cut(s) 599
Bst6I CTCTTC 1 cut(s) 312
BstAPI GCANNNNNTGC 2 cut(s) 386, 1004
BstC8I GCNNGC 5 cut(s) 438, 563, 633, 849, 996
BstDEI CTNAG 5 cut(s) 72, 216, 576, 614, 757
BstEII GGTNACC 1 cut(s) 1041
BstF5I GGATG 3 cut(s) 391, 793, 955
BstFNI CGCG 1 cut(s) 364
BstHHI GCGC 2 cut(s) 137, 163
BstKTI GATC 5 cut(s) 178, 325, 340, 674, 717
BstMAI GTCTC 1 cut(s) 519
BstMBI GATC 5 cut(s) 175, 322, 337, 671, 714
BstMWI GCNNNNNNNGC 9 cut(s) 17, 143, 261, 386, 641, 848, 900, 1004, 1029
BstPI GGTNACC 1 cut(s) 1041
BstUI CGCG 1 cut(s) 364
BstV1I GCAGC 8 cut(s) 105, 130, 362, 392, 671, 751, 827, 838
BstV2I GAAGAC 1 cut(s) 495
BstX2I RGATCY 2 cut(s) 322, 714
BstXI CCANNNNNNTGG 1 cut(s) 930
BstYI RGATCY 2 cut(s) 322, 714
BsuI GTATCC 1 cut(s) 707
BsuRI GGCC 5 cut(s) 249, 415, 635, 842, 921
BtrI CACGTC 1 cut(s) 101
BtsCI GGATG 3 cut(s) 391, 793, 955
BtsI GCAGTG 1 cut(s) 639
BtsIMutI CAGTG 3 cut(s) 207, 639, 930
BtuMI TCGCGA 1 cut(s) 364
Cac8I GCNNGC 5 cut(s) 438, 563, 633, 849, 996
CaiI CAGNNNCTG 1 cut(s) 590
CfoI GCGC 2 cut(s) 137, 163
Cfr10I RCCGGY 1 cut(s) 1045
Cfr13I GGNCC 4 cut(s) 248, 393, 634, 920
Csp6I GTAC 2 cut(s) 168, 194
CspAI ACCGGT 1 cut(s) 1045
CviAII CATG 1 cut(s) 904
CviQI GTAC 2 cut(s) 168, 194
DdeI CTNAG 5 cut(s) 72, 216, 576, 614, 757
DpnI GATC 5 cut(s) 177, 324, 339, 673, 716
DpnII GATC 5 cut(s) 175, 322, 337, 671, 714
DraI TTTAAA 2 cut(s) 648, 684
Eam1104I CTCTTC 1 cut(s) 312
EarI CTCTTC 1 cut(s) 312
EciI GGCGGA 2 cut(s) 20, 962
Eco32I GATATC 1 cut(s) 887
Eco47I GGWCC 1 cut(s) 393
Eco57I CTGAAG 2 cut(s) 244, 507
Eco91I GGTNACC 1 cut(s) 1041
EcoO109I RGGNCCY 1 cut(s) 634
EcoO65I GGTNACC 1 cut(s) 1041
EcoRI GAATTC 1 cut(s) 569
EcoRV GATATC 1 cut(s) 887
FaeI CATG 1 cut(s) 907
FalI AAGNNNNNCTT 4 cut(s) 309, 341, 740, 772
FatI CATG 1 cut(s) 903
FblI GTMKAC 1 cut(s) 300
Fnu4HI GCNGC 9 cut(s) 9, 94, 144, 351, 381, 660, 765, 816, 852
FokI GGATG 3 cut(s) 398, 800, 962
Fsp4HI GCNGC 9 cut(s) 9, 94, 144, 351, 381, 660, 765, 816, 852
FspBI CTAG 6 cut(s) 252, 566, 732, 827, 848, 968
GlaI GCGC 2 cut(s) 136, 162
GluI GCNGC 9 cut(s) 9, 94, 144, 351, 381, 660, 765, 816, 852
HaeIII GGCC 5 cut(s) 249, 415, 635, 842, 921
HapII CCGG 1 cut(s) 1046
HhaI GCGC 2 cut(s) 137, 163
Hin1II CATG 1 cut(s) 907
Hin6I GCGC 2 cut(s) 135, 161
HinP1I GCGC 2 cut(s) 135, 161
HincII GTYRAC 1 cut(s) 301
HindII GTYRAC 1 cut(s) 301
HinfI GANTC 7 cut(s) 212, 237, 359, 366, 542, 612, 830
HpaII CCGG 1 cut(s) 1046
HphI GGTGA 2 cut(s) 46, 1035
Hpy166II GTNNAC 3 cut(s) 301, 396, 806
Hpy188I TCNGA 6 cut(s) 24, 87, 217, 577, 586, 671
Hpy188III TCNNGA 8 cut(s) 179, 326, 363, 546, 602, 827, 834, 882
Hpy8I GTNNAC 3 cut(s) 301, 396, 806
Hpy99I CGWCG 2 cut(s) 105, 302
HpyAV CCTTC 4 cut(s) 49, 521, 619, 742
HpyCH4III ACNGT 1 cut(s) 599
HpyCH4IV ACGT 2 cut(s) 100, 297
HpyCH4V TGCA 8 cut(s) 93, 308, 440, 631, 854, 869, 983, 1013
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 143, 261, 386, 641, 848, 900, 1004, 1029
HpyF3I CTNAG 5 cut(s) 72, 216, 576, 614, 757
HpySE526I ACGT 2 cut(s) 100, 297
Hsp92II CATG 1 cut(s) 907
HspAI GCGC 2 cut(s) 135, 161
Kzo9I GATC 5 cut(s) 175, 322, 337, 671, 714
LmnI GCTCC 1 cut(s) 331
LpnPI CCDG 9 cut(s) 192, 531, 617, 692, 729, 847, 855, 929, 936
Lsp1109I GCAGC 8 cut(s) 105, 130, 362, 392, 671, 751, 827, 838
LweI GCATC 3 cut(s) 376, 577, 1032
MaeI CTAG 6 cut(s) 252, 566, 732, 827, 848, 968
MaeII ACGT 2 cut(s) 100, 297
MaeIII GTNAC 2 cut(s) 912, 1041
MalI GATC 5 cut(s) 177, 324, 339, 673, 716
MboI GATC 5 cut(s) 175, 322, 337, 671, 714
MboII GAAGA 3 cut(s) 329, 500, 551
MfeI CAATTG 1 cut(s) 722
MflI RGATCY 2 cut(s) 322, 714
MluCI AATT 6 cut(s) 476, 569, 722, 809, 987, 999
MlyI GAGTC 2 cut(s) 368, 606
MmeI TCCRAC 1 cut(s) 389
MroXI GAANNNNTTC 1 cut(s) 752
MseI TTAA 3 cut(s) 647, 683, 822
MslI CAYNNNNRTG 1 cut(s) 962
MspA1I CMGCKG 3 cut(s) 8, 383, 662
MspI CCGG 1 cut(s) 1046
MunI CAATTG 1 cut(s) 722
MvnI CGCG 1 cut(s) 364
MwoI GCNNNNNNNGC 9 cut(s) 17, 143, 261, 386, 641, 848, 900, 1004, 1029
NdeII GATC 5 cut(s) 175, 322, 337, 671, 714
NheI GCTAGC 1 cut(s) 847
NlaIII CATG 1 cut(s) 907
NlaIV GGNNCC 1 cut(s) 973
NmuCI GTSAC 1 cut(s) 1041
NruI TCGCGA 1 cut(s) 364
PdmI GAANNNNTTC 1 cut(s) 752
PfeI GAWTC 5 cut(s) 212, 237, 366, 542, 830
PflFI GACNNNGTC 1 cut(s) 615
PinAI ACCGGT 1 cut(s) 1045
PkrI GCNGC 9 cut(s) 10, 95, 145, 352, 382, 661, 766, 817, 853
PleI GAGTC 2 cut(s) 367, 606
PpsI GAGTC 2 cut(s) 367, 606
PshBI ATTAAT 1 cut(s) 822
PspEI GGTNACC 1 cut(s) 1041
PspN4I GGNNCC 1 cut(s) 973
PspPI GGNCC 4 cut(s) 248, 393, 634, 920
PstNI CAGNNNCTG 1 cut(s) 590
PsuI RGATCY 2 cut(s) 322, 714
PsyI GACNNNGTC 1 cut(s) 615
RruI TCGCGA 1 cut(s) 364
RsaI GTAC 2 cut(s) 169, 195
RsaNI GTAC 2 cut(s) 168, 194
RseI CAYNNNNRTG 1 cut(s) 962
SalI GTCGAC 1 cut(s) 299
SaqAI TTAA 3 cut(s) 647, 683, 822
SatI GCNGC 9 cut(s) 9, 94, 144, 351, 381, 660, 765, 816, 852
Sau3AI GATC 5 cut(s) 175, 322, 337, 671, 714
Sau96I GGNCC 4 cut(s) 248, 393, 634, 920
ScaI AGTACT 1 cut(s) 195
SchI GAGTC 2 cut(s) 368, 606
SfaNI GCATC 3 cut(s) 376, 577, 1032
SinI GGWCC 1 cut(s) 393
SmiMI CAYNNNNRTG 1 cut(s) 962
SmlI CTYRAG 4 cut(s) 326, 469, 532, 895
SmoI CTYRAG 4 cut(s) 326, 469, 532, 895
Sse9I AATT 6 cut(s) 476, 569, 722, 809, 987, 999
SsiI CCGC 5 cut(s) 6, 31, 383, 662, 947
SspMI CTAG 6 cut(s) 252, 566, 732, 827, 848, 968
TaaI ACNGT 1 cut(s) 599
TaiI ACGT 2 cut(s) 103, 300
TaqI TCGA 2 cut(s) 300, 555
TaqII GACCGA 2 cut(s) 93, 381
TasI AATT 6 cut(s) 476, 569, 722, 809, 987, 999
TatI WGTACW 1 cut(s) 193
TfiI GAWTC 5 cut(s) 212, 237, 366, 542, 830
Tru1I TTAA 3 cut(s) 647, 683, 822
Tru9I TTAA 3 cut(s) 647, 683, 822
TscAI CASTG 3 cut(s) 214, 646, 930
TseFI GTSAC 1 cut(s) 1041
TseI GCWGC 9 cut(s) 8, 93, 143, 350, 380, 659, 764, 815, 851
Tsp45I GTSAC 1 cut(s) 1041
TspDTI ATGAA 1 cut(s) 503
TspGWI ACGGA 1 cut(s) 176
TspRI CASTG 3 cut(s) 214, 646, 930
Tth111I GACNNNGTC 1 cut(s) 615
VpaK11BI GGWCC 1 cut(s) 393
VspI ATTAAT 1 cut(s) 822
XapI RAATTY 2 cut(s) 569, 987
XbaI TCTAGA 1 cut(s) 826
XmiI GTMKAC 1 cut(s) 300
XmnI GAANNNNTTC 1 cut(s) 752
XspI CTAG 6 cut(s) 252, 566, 732, 827, 848, 968
ZrmI AGTACT 1 cut(s) 195
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.