FvH4_5g17910

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011234
Physical Location & Seq
Reverse (-)
10274326 .. 10278633
4308 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g17910.t2

Sequence Viewer

Length: 1062 bp
ATGTCCGCCGCCTCATCAGCTCTCACACTCCGCCTCCCCTTCGCTTCCTCAATCACCGCTACTACCACCACCACCAAGCTCATTTATCCGATATGCAGCTCGCGTCGGTCTATAAGCAGTTTGAGGCTTGTGGGTTGTGCCCGTGCGGCCATTTCTAGCGAAGCGCAAGGTGCATTTGATCCTGAACTCCGTTTAGTACTTGAACTTGCCACTGATTCTGAGTTATACGAGATTGAAAGAATCCTTTTTGGCCCGAGCTACTTCAGCCCTTTGCTGAAATCCATAATGAGCAGAACCAATGTCGACTATGCAATGATTGAGGAGGATCTTGAGGAGCGAGATCAGTTTTTATCAGCATTAGAGTCGCGATTCTTGTTCCTCGCAGCTGATGCTCGGTCCACAATAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTTAGAAAAGAGTTGAATATTCCTTGCTCGAGCAAATTATCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTGTTGCGTGACTACTCAAGTGAAGAATCAGGAAGTTTTGAGGATTTGCTAGAATTCTCTGAGCCATCAGATGGTCAAAACAGTCTTGAACTTGGACTCAGTCAATGGAAGGTGCAGGCCCTCACTGCCCTAAAAGTTGGGGCAGCAGAACTCCGATCAATGTTTTTTAAGGGTGGTGGTATCCTTACTCTGGCAAAGATCTATCAATTGTTAGCTAGGAAGTTATCGGGGAAAGTGTTCTTAGAAGCTGCCAACTATCAACTGAAAAGGGATTTTGTTAGAAAGGGTGGACAATTAGCAGCTATTAATCTAGAATCCAGAGTGGCCTTGCTAGCTGCAAAACAAGGTTTTGCGGGGGCTACATCAAGATATCTTGGCTTGAGAAGCATGATGGCTTTACTTGGCCCAGTGCTTTGGGGAACATTTCTGGCGGATGTTGTCATTCAAATGCTAGGAACTGATTATGCAAGAATATTGCGAGCAATTTATGCCTTTGCACAGATACGTATCACTCGCACTTATGGGTCACCGGTTGATGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

354

Amino Acids

39.04

Weight (kDa)

7.63

Isoelectric Point (pI)

51.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 590
AccI GTMKAC 1 cut(s) 303
AccII CGCG 2 cut(s) 103, 367
AciI CCGC 7 cut(s) 6, 9, 31, 57, 146, 872, 950
AclWI GGATC 2 cut(s) 173, 333
AcoI YGGCCR 1 cut(s) 147
AcsI RAATTY 1 cut(s) 572
AcuI CTGAAG 2 cut(s) 247, 510
AfaI GTAC 1 cut(s) 198
AfiI CCNNNNNNNGG 3 cut(s) 405, 590, 709
AgeI ACCGGT 1 cut(s) 1048
AgsI TTSAA 6 cut(s) 203, 236, 460, 500, 608, 965
AluBI AGCT 9 cut(s) 20, 79, 99, 258, 386, 734, 767, 821, 854
AluI AGCT 9 cut(s) 20, 79, 99, 258, 386, 734, 767, 821, 854
AlwI GGATC 2 cut(s) 173, 333
Ama87I CYCGRG 2 cut(s) 253, 472
AoxI GGCC 6 cut(s) 147, 250, 416, 636, 843, 922
ApeKI GCWGC 6 cut(s) 96, 383, 662, 767, 818, 854
ApoI RAATTY 1 cut(s) 572
AseI ATTAAT 1 cut(s) 825
AsiGI ACCGGT 1 cut(s) 1048
Asp700I GAANNNNTTC 1 cut(s) 755
AspLEI GCGC 1 cut(s) 166
AspS9I GGNCC 4 cut(s) 251, 396, 637, 923
AsuHPI GGTGA 2 cut(s) 46, 1038
AsuNHI GCTAGC 1 cut(s) 850
AvaI CYCGRG 2 cut(s) 253, 472
AvaII GGWCC 1 cut(s) 396
BaeGI GKGCMC 1 cut(s) 142
BbsI GAAGAC 1 cut(s) 498
BbvI GCAGC 6 cut(s) 108, 395, 674, 754, 830, 841
BccI CCATC 4 cut(s) 427, 584, 592, 904
BcgI CGANNNNNNTGC 2 cut(s) 345, 379
BciVI GTATCC 1 cut(s) 710
BfaI CTAG 6 cut(s) 156, 569, 735, 830, 851, 971
BfuI GTATCC 1 cut(s) 710
BglI GCCNNNNNGGC 1 cut(s) 146
BglII AGATCT 1 cut(s) 717
BisI GCNGC 8 cut(s) 9, 97, 147, 384, 663, 768, 819, 855
BlsI GCNGC 8 cut(s) 10, 98, 148, 385, 664, 769, 820, 856
BmcAI AGTACT 1 cut(s) 198
Bme18I GGWCC 1 cut(s) 396
BmeT110I CYCGRG 2 cut(s) 253, 472
BmgT120I GGNCC 4 cut(s) 251, 396, 637, 923
BmrI ACTGGG 1 cut(s) 920
BmsI GCATC 1 cut(s) 379
BmtI GCTAGC 1 cut(s) 854
BmuI ACTGGG 1 cut(s) 920
BpiI GAAGAC 1 cut(s) 498
BpuEI CTTGAG 3 cut(s) 350, 520, 919
BsaAI YACGTR 1 cut(s) 1025
BsaBI GATNNNNATC 1 cut(s) 1025
BsaWI WCCGGW 1 cut(s) 1048
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 405, 590, 709
Bse118I RCCGGY 1 cut(s) 1048
Bse1I ACTGG 1 cut(s) 926
Bse3DI GCAATG 1 cut(s) 318
Bse8I GATNNNNATC 1 cut(s) 1025
BseGI GGATG 1 cut(s) 958
BseJI GATNNNNATC 1 cut(s) 1025
BseLI CCNNNNNNNGG 3 cut(s) 405, 590, 709
BseMI GCAATG 1 cut(s) 318
BseMII CTCAG 3 cut(s) 210, 570, 631
BseNI ACTGG 1 cut(s) 926
BseRI GAGGAG 2 cut(s) 335, 347
BseSI GKGCMC 1 cut(s) 142
BseXI GCAGC 6 cut(s) 108, 395, 674, 754, 830, 841
BsgI GTGCAG 1 cut(s) 653
Bsh1236I CGCG 2 cut(s) 103, 367
BshFI GGCC 6 cut(s) 149, 252, 418, 638, 845, 924
BshTI ACCGGT 1 cut(s) 1048
BsiHKCI CYCGRG 2 cut(s) 253, 472
BsiSI CCGG 1 cut(s) 1049
BslI CCNNNNNNNGG 3 cut(s) 405, 590, 709
BsnI GGCC 6 cut(s) 149, 252, 418, 638, 845, 924
BsoBI CYCGRG 2 cut(s) 253, 472
Bsp1286I GDGCHC 1 cut(s) 142
Bsp143I GATC 5 cut(s) 178, 325, 340, 674, 717
Bsp68I TCGCGA 1 cut(s) 367
BspACI CCGC 7 cut(s) 6, 9, 31, 57, 146, 872, 950
BspANI GGCC 6 cut(s) 149, 252, 418, 638, 845, 924
BspCNI CTCAG 3 cut(s) 211, 571, 630
BspFNI CGCG 2 cut(s) 103, 367
BspOI GCTAGC 1 cut(s) 854
BspPI GGATC 2 cut(s) 173, 333
BsrDI GCAATG 1 cut(s) 318
BsrFI RCCGGY 1 cut(s) 1048
BsrI ACTGG 1 cut(s) 926
BssAI RCCGGY 1 cut(s) 1048
BssMI GATC 5 cut(s) 178, 325, 340, 674, 717
Bst4CI ACNGT 1 cut(s) 602
BstAPI GCANNNNNTGC 2 cut(s) 389, 1007
BstBAI YACGTR 1 cut(s) 1025
BstC8I GCNNGC 5 cut(s) 101, 441, 636, 852, 999
BstDEI CTNAG 4 cut(s) 219, 579, 617, 760
BstEII GGTNACC 1 cut(s) 1044
BstF5I GGATG 1 cut(s) 958
BstFNI CGCG 2 cut(s) 103, 367
BstHHI GCGC 1 cut(s) 166
BstKTI GATC 5 cut(s) 181, 328, 343, 677, 720
BstMBI GATC 5 cut(s) 178, 325, 340, 674, 717
BstMWI GCNNNNNNNGC 9 cut(s) 17, 146, 170, 264, 389, 644, 851, 903, 1007
BstPI GGTNACC 1 cut(s) 1044
BstSLI GKGCMC 1 cut(s) 142
BstSNI TACGTA 1 cut(s) 1025
BstUI CGCG 2 cut(s) 103, 367
BstV1I GCAGC 6 cut(s) 108, 395, 674, 754, 830, 841
BstV2I GAAGAC 1 cut(s) 498
BstX2I RGATCY 2 cut(s) 325, 717
BstXI CCANNNNNNTGG 1 cut(s) 933
BstYI RGATCY 2 cut(s) 325, 717
BsuI GTATCC 1 cut(s) 710
BsuRI GGCC 6 cut(s) 149, 252, 418, 638, 845, 924
BtsCI GGATG 1 cut(s) 958
BtsI GCAGTG 1 cut(s) 642
BtsIMutI CAGTG 3 cut(s) 210, 642, 933
BtuMI TCGCGA 1 cut(s) 367
Cac8I GCNNGC 5 cut(s) 101, 441, 636, 852, 999
CfoI GCGC 1 cut(s) 166
Cfr10I RCCGGY 1 cut(s) 1048
Cfr13I GGNCC 4 cut(s) 251, 396, 637, 923
CseI GACGC 1 cut(s) 92
Csp6I GTAC 1 cut(s) 197
CspAI ACCGGT 1 cut(s) 1048
CviAII CATG 1 cut(s) 907
CviQI GTAC 1 cut(s) 197
DdeI CTNAG 4 cut(s) 219, 579, 617, 760
DpnI GATC 5 cut(s) 180, 327, 342, 676, 719
DpnII GATC 5 cut(s) 178, 325, 340, 674, 717
EaeI YGGCCR 1 cut(s) 147
EciI GGCGGA 2 cut(s) 20, 965
Eco105I TACGTA 1 cut(s) 1025
Eco32I GATATC 1 cut(s) 890
Eco47I GGWCC 1 cut(s) 396
Eco57I CTGAAG 2 cut(s) 247, 510
Eco88I CYCGRG 2 cut(s) 253, 472
Eco91I GGTNACC 1 cut(s) 1044
EcoO109I RGGNCCY 1 cut(s) 637
EcoO65I GGTNACC 1 cut(s) 1044
EcoRI GAATTC 1 cut(s) 572
EcoRV GATATC 1 cut(s) 890
FaeI CATG 1 cut(s) 910
FatI CATG 1 cut(s) 906
FauI CCCGC 1 cut(s) 865
FblI GTMKAC 1 cut(s) 303
Fnu4HI GCNGC 8 cut(s) 9, 97, 147, 384, 663, 768, 819, 855
FokI GGATG 1 cut(s) 965
Fsp4HI GCNGC 8 cut(s) 9, 97, 147, 384, 663, 768, 819, 855
FspBI CTAG 6 cut(s) 156, 569, 735, 830, 851, 971
GlaI GCGC 1 cut(s) 165
GluI GCNGC 8 cut(s) 9, 97, 147, 384, 663, 768, 819, 855
HaeIII GGCC 6 cut(s) 149, 252, 418, 638, 845, 924
HapII CCGG 1 cut(s) 1049
HgaI GACGC 1 cut(s) 92
HhaI GCGC 1 cut(s) 166
Hin1II CATG 1 cut(s) 910
Hin6I GCGC 1 cut(s) 164
HinP1I GCGC 1 cut(s) 164
HincII GTYRAC 1 cut(s) 304
HindII GTYRAC 1 cut(s) 304
HinfI GANTC 7 cut(s) 215, 240, 362, 369, 545, 615, 833
HpaII CCGG 1 cut(s) 1049
HphI GGTGA 2 cut(s) 46, 1038
Hpy166II GTNNAC 3 cut(s) 304, 399, 809
Hpy188I TCNGA 5 cut(s) 90, 220, 580, 589, 674
Hpy188III TCNNGA 8 cut(s) 182, 329, 366, 549, 605, 830, 837, 885
Hpy8I GTNNAC 3 cut(s) 304, 399, 809
Hpy99I CGWCG 1 cut(s) 108
HpyAV CCTTC 3 cut(s) 49, 524, 622
HpyCH4III ACNGT 1 cut(s) 602
HpyCH4IV ACGT 1 cut(s) 1024
HpyCH4V TGCA 8 cut(s) 96, 173, 311, 443, 634, 857, 986, 1016
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 146, 170, 264, 389, 644, 851, 903, 1007
HpyF3I CTNAG 4 cut(s) 219, 579, 617, 760
HpySE526I ACGT 1 cut(s) 1024
Hsp92II CATG 1 cut(s) 910
HspAI GCGC 1 cut(s) 164
Kzo9I GATC 5 cut(s) 178, 325, 340, 674, 717
LmnI GCTCC 1 cut(s) 334
LpnPI CCDG 7 cut(s) 195, 534, 620, 695, 850, 932, 939
Lsp1109I GCAGC 6 cut(s) 108, 395, 674, 754, 830, 841
LweI GCATC 1 cut(s) 379
MaeI CTAG 6 cut(s) 156, 569, 735, 830, 851, 971
MaeII ACGT 1 cut(s) 1024
MaeIII GTNAC 2 cut(s) 527, 1044
MalI GATC 5 cut(s) 180, 327, 342, 676, 719
MboI GATC 5 cut(s) 178, 325, 340, 674, 717
MboII GAAGA 2 cut(s) 503, 554
MfeI CAATTG 1 cut(s) 725
MflI RGATCY 2 cut(s) 325, 717
MhlI GDGCHC 1 cut(s) 142
MluCI AATT 5 cut(s) 479, 572, 725, 812, 1002
MlyI GAGTC 2 cut(s) 371, 609
MmeI TCCRAC 1 cut(s) 392
MroXI GAANNNNTTC 1 cut(s) 755
MseI TTAA 2 cut(s) 687, 825
MslI CAYNNNNRTG 1 cut(s) 965
MspA1I CMGCKG 1 cut(s) 386
MspI CCGG 1 cut(s) 1049
MunI CAATTG 1 cut(s) 725
MvnI CGCG 2 cut(s) 103, 367
MwoI GCNNNNNNNGC 9 cut(s) 17, 146, 170, 264, 389, 644, 851, 903, 1007
NdeII GATC 5 cut(s) 178, 325, 340, 674, 717
NheI GCTAGC 1 cut(s) 850
NlaIII CATG 1 cut(s) 910
NmuCI GTSAC 2 cut(s) 527, 1044
NruI TCGCGA 1 cut(s) 367
PaeR7I CTCGAG 1 cut(s) 472
PdmI GAANNNNTTC 1 cut(s) 755
PfeI GAWTC 5 cut(s) 215, 240, 369, 545, 833
PflFI GACNNNGTC 1 cut(s) 618
PflMI CCANNNNNTGG 1 cut(s) 590
PinAI ACCGGT 1 cut(s) 1048
PkrI GCNGC 8 cut(s) 10, 98, 148, 385, 664, 769, 820, 856
PleI GAGTC 2 cut(s) 370, 609
PpsI GAGTC 2 cut(s) 370, 609
Ppu21I YACGTR 1 cut(s) 1025
PshBI ATTAAT 1 cut(s) 825
PspEI GGTNACC 1 cut(s) 1044
PspPI GGNCC 4 cut(s) 251, 396, 637, 923
PspXI VCTCGAGB 1 cut(s) 472
PsuI RGATCY 2 cut(s) 325, 717
PsyI GACNNNGTC 1 cut(s) 618
PvuII CAGCTG 1 cut(s) 386
RruI TCGCGA 1 cut(s) 367
RsaI GTAC 1 cut(s) 198
RsaNI GTAC 1 cut(s) 197
RseI CAYNNNNRTG 1 cut(s) 965
SalI GTCGAC 1 cut(s) 302
SaqAI TTAA 2 cut(s) 687, 825
SatI GCNGC 8 cut(s) 9, 97, 147, 384, 663, 768, 819, 855
Sau3AI GATC 5 cut(s) 178, 325, 340, 674, 717
Sau96I GGNCC 4 cut(s) 251, 396, 637, 923
ScaI AGTACT 1 cut(s) 198
SchI GAGTC 2 cut(s) 371, 609
SduI GDGCHC 1 cut(s) 142
SfaNI GCATC 1 cut(s) 379
Sfr274I CTCGAG 1 cut(s) 472
SinI GGWCC 1 cut(s) 396
SlaI CTCGAG 1 cut(s) 472
SmiMI CAYNNNNRTG 1 cut(s) 965
SmlI CTYRAG 4 cut(s) 329, 472, 535, 898
SmoI CTYRAG 4 cut(s) 329, 472, 535, 898
SnaBI TACGTA 1 cut(s) 1025
Sse9I AATT 5 cut(s) 479, 572, 725, 812, 1002
SsiI CCGC 7 cut(s) 6, 9, 31, 57, 146, 872, 950
SspI AATATT 2 cut(s) 463, 993
SspMI CTAG 6 cut(s) 156, 569, 735, 830, 851, 971
TaaI ACNGT 1 cut(s) 602
TaiI ACGT 1 cut(s) 1027
TaqI TCGA 2 cut(s) 303, 473
TaqII GACCGA 2 cut(s) 96, 384
TasI AATT 5 cut(s) 479, 572, 725, 812, 1002
TatI WGTACW 1 cut(s) 196
TauI GCSGC 2 cut(s) 11, 149
TfiI GAWTC 5 cut(s) 215, 240, 369, 545, 833
Tru1I TTAA 2 cut(s) 687, 825
Tru9I TTAA 2 cut(s) 687, 825
TscAI CASTG 3 cut(s) 217, 649, 933
TseFI GTSAC 2 cut(s) 527, 1044
TseI GCWGC 6 cut(s) 96, 383, 662, 767, 818, 854
Tsp45I GTSAC 2 cut(s) 527, 1044
TspDTI ATGAA 1 cut(s) 506
TspGWI ACGGA 1 cut(s) 179
TspRI CASTG 3 cut(s) 217, 649, 933
Tth111I GACNNNGTC 1 cut(s) 618
Van91I CCANNNNNTGG 1 cut(s) 590
VpaK11BI GGWCC 1 cut(s) 396
VspI ATTAAT 1 cut(s) 825
XapI RAATTY 1 cut(s) 572
XbaI TCTAGA 1 cut(s) 829
XhoI CTCGAG 1 cut(s) 472
XmiI GTMKAC 1 cut(s) 303
XmnI GAANNNNTTC 1 cut(s) 755
XspI CTAG 6 cut(s) 156, 569, 735, 830, 851, 971
ZrmI AGTACT 1 cut(s) 198
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.