Rmu_sc0004786.1_g000002

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004786.1
OG0011234
Physical Location & Seq
Forward (+)
6243 .. 10005
3763 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004786.1_g000002.1.cds

Sequence Viewer

Length: 1041 bp
atgtccgctgcctcatcagctctgacactccgcctccccttcgcttcctcaatcaccaccaccaccactaagctcatttatccgatatgcagctcacgtcggtctataagcagtttgaggcttgtgggttgcgctcgtgctgccatttcaagccaagcgcaaggtacatttgatcctgaactccgtttagtacttgaacttgccactgattctgagttatatgagattgaaagaatcctttttggccctagctacttcagccctttgctgaaatccataatgagcagaaccaacgtcgactatgcaatgattgaagaggatcttgaggagcgagatcagtttttagcagcattagagtcgcgattcttattcctcgcagcggatgctcggtccacaataaggggttggaggccatcatataggaatgtcttgcttgcagttagaaaagagttgaacattccttgctcaagcaaattatcaactgaagaccttgaagcagagattttccttcatctgttgcgagactactcaagtgaagaatcaggaagtttcgagggcttgctagaattctctgagccatcagatgctgaaaacagtcttgaacttggactcagtcaatggaaggtgcaggccctcactgctttaaaagttggggcagcggaactccgatcaatgtttttaaagggtggtggtatccttactctggcaaagatctatcaattgttagctaggaagttatctgggaaggtgttcttagaagctgccaactatcaactgaaaagggatgttgttagaaagggtggacaattagcagctataaatctagaatccagagtggccttgctagctgcaaaacaaggttttgcaggggctacatcaagatatcttggcttgagaagcatgatgtcgctttggggaacatttctggcggatgttgtcattcaaatgctaggaaccgattatgcaagaattttgcgagcaatttatgcttttgcacagatacgcatcactcgcacttatgggtcactggttgatgactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

346

Amino Acids

38.3

Weight (kDa)

8.33

Isoelectric Point (pI)

50.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 297
AccII CGCG 1 cut(s) 361
AciI CCGC 5 cut(s) 6, 31, 380, 659, 929
AclWI GGATC 2 cut(s) 167, 327
AcsI RAATTY 2 cut(s) 566, 969
AcuI CTGAAG 2 cut(s) 241, 504
AfaI GTAC 2 cut(s) 166, 192
AfiI CCNNNNNNNGG 3 cut(s) 379, 399, 703
AgsI TTSAA 8 cut(s) 150, 197, 230, 314, 454, 494, 602, 944
AjiI CACGTC 1 cut(s) 98
AluBI AGCT 8 cut(s) 20, 73, 93, 252, 728, 761, 815, 848
AluI AGCT 8 cut(s) 20, 73, 93, 252, 728, 761, 815, 848
Alw26I GTCTC 1 cut(s) 516
AlwI GGATC 2 cut(s) 167, 327
AlwNI CAGNNNCTG 1 cut(s) 587
AoxI GGCC 4 cut(s) 244, 410, 630, 837
ApeKI GCWGC 9 cut(s) 8, 90, 140, 347, 377, 656, 761, 812, 848
ApoI RAATTY 2 cut(s) 566, 969
Asp700I GAANNNNTTC 1 cut(s) 749
AspLEI GCGC 2 cut(s) 134, 160
AspS9I GGNCC 3 cut(s) 245, 390, 631
AsuHPI GGTGA 1 cut(s) 46
AsuNHI GCTAGC 1 cut(s) 844
AvaII GGWCC 1 cut(s) 390
BauI CACGAG 1 cut(s) 135
BbsI GAAGAC 1 cut(s) 492
BbvI GCAGC 8 cut(s) 102, 127, 359, 389, 668, 748, 824, 835
BccI CCATC 2 cut(s) 421, 586
BcgI CGANNNNNNTGC 2 cut(s) 339, 373
BciVI GTATCC 1 cut(s) 704
BcoDI GTCTC 1 cut(s) 516
BfaI CTAG 6 cut(s) 249, 563, 729, 824, 845, 950
BfuI GTATCC 1 cut(s) 704
BglII AGATCT 1 cut(s) 711
BisI GCNGC 9 cut(s) 9, 91, 141, 348, 378, 657, 762, 813, 849
BlsI GCNGC 9 cut(s) 10, 92, 142, 349, 379, 658, 763, 814, 850
BmcAI AGTACT 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 390
BmgBI CACGTC 1 cut(s) 98
BmgT120I GGNCC 3 cut(s) 245, 390, 631
BmiI GGNNCC 1 cut(s) 955
BmsI GCATC 3 cut(s) 373, 574, 1014
BmtI GCTAGC 1 cut(s) 848
BpiI GAAGAC 1 cut(s) 492
BpuEI CTTGAG 4 cut(s) 344, 451, 514, 913
BsaBI GATNNNNATC 1 cut(s) 1004
BsaXI ACNNNNNCTCC 2 cut(s) 18, 48
Bsc4I CCNNNNNNNGG 3 cut(s) 379, 399, 703
Bse1I ACTGG 1 cut(s) 1032
Bse3DI GCAATG 1 cut(s) 312
Bse8I GATNNNNATC 1 cut(s) 1004
BseGI GGATG 3 cut(s) 388, 790, 937
BseJI GATNNNNATC 1 cut(s) 1004
BseLI CCNNNNNNNGG 3 cut(s) 379, 399, 703
BseMI GCAATG 1 cut(s) 312
BseMII CTCAG 3 cut(s) 204, 564, 625
BseNI ACTGG 1 cut(s) 1032
BseRI GAGGAG 1 cut(s) 341
BseXI GCAGC 8 cut(s) 102, 127, 359, 389, 668, 748, 824, 835
BsgI GTGCAG 1 cut(s) 647
Bsh1236I CGCG 1 cut(s) 361
BshFI GGCC 4 cut(s) 246, 412, 632, 839
BslI CCNNNNNNNGG 3 cut(s) 379, 399, 703
BsmAI GTCTC 1 cut(s) 516
BsnI GGCC 4 cut(s) 246, 412, 632, 839
Bsp143I GATC 5 cut(s) 172, 319, 334, 668, 711
Bsp68I TCGCGA 1 cut(s) 361
BspACI CCGC 5 cut(s) 6, 31, 380, 659, 929
BspANI GGCC 4 cut(s) 246, 412, 632, 839
BspCNI CTCAG 3 cut(s) 205, 565, 624
BspFNI CGCG 1 cut(s) 361
BspLI GGNNCC 1 cut(s) 955
BspOI GCTAGC 1 cut(s) 848
BspPI GGATC 2 cut(s) 167, 327
BsrDI GCAATG 1 cut(s) 312
BsrI ACTGG 1 cut(s) 1032
BssMI GATC 5 cut(s) 172, 319, 334, 668, 711
BssSI CACGAG 1 cut(s) 135
Bst2BI CACGAG 1 cut(s) 135
Bst4CI ACNGT 1 cut(s) 596
Bst6I CTCTTC 1 cut(s) 309
BstAPI GCANNNNNTGC 2 cut(s) 383, 986
BstC8I GCNNGC 5 cut(s) 435, 560, 630, 846, 978
BstDEI CTNAG 5 cut(s) 69, 213, 573, 611, 754
BstF5I GGATG 3 cut(s) 388, 790, 937
BstFNI CGCG 1 cut(s) 361
BstHHI GCGC 2 cut(s) 134, 160
BstKTI GATC 5 cut(s) 175, 322, 337, 671, 714
BstMAI GTCTC 1 cut(s) 516
BstMBI GATC 5 cut(s) 172, 319, 334, 668, 711
BstMWI GCNNNNNNNGC 9 cut(s) 17, 140, 258, 383, 638, 845, 897, 986, 1011
BstUI CGCG 1 cut(s) 361
BstV1I GCAGC 8 cut(s) 102, 127, 359, 389, 668, 748, 824, 835
BstV2I GAAGAC 1 cut(s) 492
BstX2I RGATCY 2 cut(s) 319, 711
BstYI RGATCY 2 cut(s) 319, 711
BsuI GTATCC 1 cut(s) 704
BsuRI GGCC 4 cut(s) 246, 412, 632, 839
BtrI CACGTC 1 cut(s) 98
BtsCI GGATG 3 cut(s) 388, 790, 937
BtsI GCAGTG 1 cut(s) 636
BtsIMutI CAGTG 3 cut(s) 204, 636, 1025
BtuMI TCGCGA 1 cut(s) 361
Cac8I GCNNGC 5 cut(s) 435, 560, 630, 846, 978
CaiI CAGNNNCTG 1 cut(s) 587
CfoI GCGC 2 cut(s) 134, 160
Cfr13I GGNCC 3 cut(s) 245, 390, 631
Csp6I GTAC 2 cut(s) 165, 191
CviAII CATG 1 cut(s) 901
CviQI GTAC 2 cut(s) 165, 191
DdeI CTNAG 5 cut(s) 69, 213, 573, 611, 754
DpnI GATC 5 cut(s) 174, 321, 336, 670, 713
DpnII GATC 5 cut(s) 172, 319, 334, 668, 711
DraI TTTAAA 2 cut(s) 645, 681
Eam1104I CTCTTC 1 cut(s) 309
EarI CTCTTC 1 cut(s) 309
EciI GGCGGA 2 cut(s) 20, 944
Eco32I GATATC 1 cut(s) 884
Eco47I GGWCC 1 cut(s) 390
Eco57I CTGAAG 2 cut(s) 241, 504
EcoO109I RGGNCCY 1 cut(s) 631
EcoRI GAATTC 1 cut(s) 566
EcoRV GATATC 1 cut(s) 884
FaeI CATG 1 cut(s) 904
FalI AAGNNNNNCTT 4 cut(s) 306, 338, 737, 769
FatI CATG 1 cut(s) 900
FblI GTMKAC 1 cut(s) 297
Fnu4HI GCNGC 9 cut(s) 9, 91, 141, 348, 378, 657, 762, 813, 849
FokI GGATG 3 cut(s) 395, 797, 944
Fsp4HI GCNGC 9 cut(s) 9, 91, 141, 348, 378, 657, 762, 813, 849
FspBI CTAG 6 cut(s) 249, 563, 729, 824, 845, 950
GlaI GCGC 2 cut(s) 133, 159
GluI GCNGC 9 cut(s) 9, 91, 141, 348, 378, 657, 762, 813, 849
HaeIII GGCC 4 cut(s) 246, 412, 632, 839
HhaI GCGC 2 cut(s) 134, 160
Hin1II CATG 1 cut(s) 904
Hin6I GCGC 2 cut(s) 132, 158
HinP1I GCGC 2 cut(s) 132, 158
HincII GTYRAC 1 cut(s) 298
HindII GTYRAC 1 cut(s) 298
HinfI GANTC 7 cut(s) 209, 234, 356, 363, 539, 609, 827
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 3 cut(s) 298, 393, 803
Hpy188I TCNGA 6 cut(s) 24, 84, 214, 574, 583, 668
Hpy188III TCNNGA 8 cut(s) 176, 323, 360, 543, 599, 824, 831, 879
Hpy8I GTNNAC 3 cut(s) 298, 393, 803
Hpy99I CGWCG 2 cut(s) 102, 299
HpyAV CCTTC 4 cut(s) 49, 518, 616, 739
HpyCH4III ACNGT 1 cut(s) 596
HpyCH4IV ACGT 2 cut(s) 97, 294
HpyCH4V TGCA 8 cut(s) 90, 305, 437, 628, 851, 866, 965, 995
HpyF10VI GCNNNNNNNGC 9 cut(s) 17, 140, 258, 383, 638, 845, 897, 986, 1011
HpyF3I CTNAG 5 cut(s) 69, 213, 573, 611, 754
HpySE526I ACGT 2 cut(s) 97, 294
Hsp92II CATG 1 cut(s) 904
HspAI GCGC 2 cut(s) 132, 158
Kzo9I GATC 5 cut(s) 172, 319, 334, 668, 711
LmnI GCTCC 1 cut(s) 328
LpnPI CCDG 9 cut(s) 189, 528, 614, 689, 726, 844, 852, 911, 1013
Lsp1109I GCAGC 8 cut(s) 102, 127, 359, 389, 668, 748, 824, 835
LweI GCATC 3 cut(s) 373, 574, 1014
MaeI CTAG 6 cut(s) 249, 563, 729, 824, 845, 950
MaeII ACGT 2 cut(s) 97, 294
MaeIII GTNAC 1 cut(s) 1023
MalI GATC 5 cut(s) 174, 321, 336, 670, 713
MboI GATC 5 cut(s) 172, 319, 334, 668, 711
MboII GAAGA 3 cut(s) 326, 497, 548
MfeI CAATTG 1 cut(s) 719
MflI RGATCY 2 cut(s) 319, 711
MluCI AATT 6 cut(s) 473, 566, 719, 806, 969, 981
MlyI GAGTC 2 cut(s) 365, 603
MmeI TCCRAC 1 cut(s) 386
MroXI GAANNNNTTC 1 cut(s) 749
MseI TTAA 2 cut(s) 644, 680
MslI CAYNNNNRTG 1 cut(s) 944
MspA1I CMGCKG 3 cut(s) 8, 380, 659
MunI CAATTG 1 cut(s) 719
MvnI CGCG 1 cut(s) 361
MwoI GCNNNNNNNGC 9 cut(s) 17, 140, 258, 383, 638, 845, 897, 986, 1011
NdeII GATC 5 cut(s) 172, 319, 334, 668, 711
NheI GCTAGC 1 cut(s) 844
NlaIII CATG 1 cut(s) 904
NlaIV GGNNCC 1 cut(s) 955
NmuCI GTSAC 1 cut(s) 1023
NruI TCGCGA 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 749
PfeI GAWTC 5 cut(s) 209, 234, 363, 539, 827
PflFI GACNNNGTC 1 cut(s) 612
PkrI GCNGC 9 cut(s) 10, 92, 142, 349, 379, 658, 763, 814, 850
PleI GAGTC 2 cut(s) 364, 603
PpsI GAGTC 2 cut(s) 364, 603
PspN4I GGNNCC 1 cut(s) 955
PspPI GGNCC 3 cut(s) 245, 390, 631
PstNI CAGNNNCTG 1 cut(s) 587
PsuI RGATCY 2 cut(s) 319, 711
PsyI GACNNNGTC 1 cut(s) 612
RruI TCGCGA 1 cut(s) 361
RsaI GTAC 2 cut(s) 166, 192
RsaNI GTAC 2 cut(s) 165, 191
RseI CAYNNNNRTG 1 cut(s) 944
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 644, 680
SatI GCNGC 9 cut(s) 9, 91, 141, 348, 378, 657, 762, 813, 849
Sau3AI GATC 5 cut(s) 172, 319, 334, 668, 711
Sau96I GGNCC 3 cut(s) 245, 390, 631
ScaI AGTACT 1 cut(s) 192
SchI GAGTC 2 cut(s) 365, 603
SfaNI GCATC 3 cut(s) 373, 574, 1014
SinI GGWCC 1 cut(s) 390
SmiMI CAYNNNNRTG 1 cut(s) 944
SmlI CTYRAG 4 cut(s) 323, 466, 529, 892
SmoI CTYRAG 4 cut(s) 323, 466, 529, 892
Sse9I AATT 6 cut(s) 473, 566, 719, 806, 969, 981
SsiI CCGC 5 cut(s) 6, 31, 380, 659, 929
SspMI CTAG 6 cut(s) 249, 563, 729, 824, 845, 950
TaaI ACNGT 1 cut(s) 596
TaiI ACGT 2 cut(s) 100, 297
TaqI TCGA 2 cut(s) 297, 552
TaqII GACCGA 2 cut(s) 90, 378
TasI AATT 6 cut(s) 473, 566, 719, 806, 969, 981
TatI WGTACW 1 cut(s) 190
TfiI GAWTC 5 cut(s) 209, 234, 363, 539, 827
Tru1I TTAA 2 cut(s) 644, 680
Tru9I TTAA 2 cut(s) 644, 680
TscAI CASTG 3 cut(s) 211, 643, 1032
TseFI GTSAC 1 cut(s) 1023
TseI GCWGC 9 cut(s) 8, 90, 140, 347, 377, 656, 761, 812, 848
Tsp45I GTSAC 1 cut(s) 1023
TspDTI ATGAA 1 cut(s) 500
TspGWI ACGGA 1 cut(s) 173
TspRI CASTG 3 cut(s) 211, 643, 1032
Tth111I GACNNNGTC 1 cut(s) 612
VpaK11BI GGWCC 1 cut(s) 390
XapI RAATTY 2 cut(s) 566, 969
XbaI TCTAGA 1 cut(s) 823
XmiI GTMKAC 1 cut(s) 297
XmnI GAANNNNTTC 1 cut(s) 749
XspI CTAG 6 cut(s) 249, 563, 729, 824, 845, 950
ZrmI AGTACT 1 cut(s) 192
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.