Prupe.5G239500_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0011234
Physical Location & Seq
Reverse (-)
18063558 .. 18069069
5512 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G239500.2

Sequence Viewer

Length: 1065 bp
ATGTCCACTACCTCATCTGCTCTGGCGCTCCGCCTCCCCTTTGCTTCCCCAATCACCACCACCACCACCACCACCACCAAACTCACTTACCCAATACGTAGCTCACGTTGGTCTACAACTAGTGCGAGGCTTGTGGGTTGTGCTCATGCTGCCATTTCAGGAAAAGGGCAAGGCACCTTTGATCCAGAATTGCGTTCCGTGCTTGAACTTGCGACGGACTCTGAGTTATATGAGCTTGAAAGAATCCTTTTTGGCCCTAGCTACTTCAGCCCCTTGCTGAAATCTATAATGAGCAGAACCAATGTCGACTATGCAATGATTGAAGAGGATCTTGAAGAGCGAGAGGAATTTCTATCCACATTAGAATCGCGATTCTTATTCCTCGCAGCTGACGCCAGGTCAACGTTAAGGGGTTGGAGGCCATCATATAGGAATGTCTTGCTTGCAGTGAGAAAGGAGTTAAACATTCCTTGCTCAAGCAAATTGTCAACTGAAGACCTTGAAGCAGAGATTTTCCTTCATCTATTGCGAGATTATTCAAGCGAAGAATCAGGAAGTTTCCAGGGCTTGTTGGAATTCTCTGAGCCCTCTGATGCTCAACATAGTCTTCAACTTGGACTCAGTCAATGGAAGGTGCAGGCCCTTACTGCTTTAAAAGTCAGCGCAACAGAGCTCCGATCAATGTTTTTGAAGGGTGGTGGTATCTTTACTTTGGCAAAGATTTATCAGTTGTTAGCTAGAAAGTTATCTGGGAAGGTGTTCCTAGAAGCTGCCAACTATCAGCTAAAAAGGGATTTTGTCAGAAAGGGTGGACAATTAGCTGCTATTAATCTAGAGTCCAGAGCGGCCTTTCTTGCAGCAAAACAAGGTTTTGCAGGGGCTACATCAAGATATCTTGGCTTAAGAAGCATGATGGCTTTGCTCGGCCCAGTGCTTTGGGGAACATTTCTGGCAGATGTGGTCATTCAAATGCTAGGAACTGATTATGCAAGAATCTTGCGAGCAATTTATGCTTTTGCACAGATCCGTATCACTCGCACATACAGGTTACCGCCTGATTACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

355

Amino Acids

39.44

Weight (kDa)

9.21

Isoelectric Point (pI)

50.84

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011234)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73470 AT1G73470 AT1G73470
fragaria_vesca FvH4_5g17910 FvH4_5g17910
malus_domestica MD06G1234700.v1.1 MD14G1241900.v1.1
prunus_persica Prupe.5G239500_v2.0.a1 Prupe.5G239500_v2.0.a1
pyrus_communis pycom06g20940
rosa_chinensis RchiOBHm_Chr7g0177701
rosa_laevigata RLG00000005513
rosa_multiflora Rmu_sc0004786.1_g000002
rosa_roxburghii Rroxscaffold_3G00275640
rosa_rugosa Rorug06G0408400
rosa_samantha Rh7AG008100 Rh7BG008100 Rh7CG008500 Rh7DG008200
rosa_wichuraiana Rw7G000680

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 173
AccBSI CCGCTC 1 cut(s) 845
AccI GTMKAC 2 cut(s) 113, 306
AccII CGCG 1 cut(s) 370
AciI CCGC 3 cut(s) 31, 845, 1052
AclI AACGTT 1 cut(s) 404
AclWI GGATC 3 cut(s) 176, 336, 1018
AcsI RAATTY 2 cut(s) 347, 575
AcuI CTGAAG 2 cut(s) 250, 513
AcyI GRCGYC 1 cut(s) 393
AflII CTTAAG 1 cut(s) 901
AgsI TTSAA 9 cut(s) 206, 239, 323, 335, 503, 540, 611, 691, 968
AhdI GACNNNNNGTC 1 cut(s) 397
AhlI ACTAGT 1 cut(s) 119
AjnI CCWGG 2 cut(s) 395, 561
AluBI AGCT 9 cut(s) 102, 235, 261, 389, 673, 737, 770, 784, 821
AluI AGCT 9 cut(s) 102, 235, 261, 389, 673, 737, 770, 784, 821
Alw21I GWGCWC 2 cut(s) 145, 675
AlwI GGATC 3 cut(s) 176, 336, 1018
AoxI GGCC 5 cut(s) 253, 419, 639, 846, 925
ApeKI GCWGC 5 cut(s) 149, 386, 770, 821, 857
ApoI RAATTY 2 cut(s) 347, 575
AseI ATTAAT 1 cut(s) 828
Asp700I GAANNNNTTC 1 cut(s) 758
AspLEI GCGC 2 cut(s) 28, 665
AspS9I GGNCC 3 cut(s) 254, 640, 926
AsuHPI GGTGA 1 cut(s) 46
BanI GGYRCC 1 cut(s) 173
BanII GRGCYC 2 cut(s) 588, 675
BbsI GAAGAC 2 cut(s) 501, 599
Bbv12I GWGCWC 2 cut(s) 145, 675
BbvI GCAGC 5 cut(s) 136, 398, 757, 808, 869
BccI CCATC 2 cut(s) 430, 907
BciT130I CCWGG 2 cut(s) 397, 563
BcuI ACTAGT 1 cut(s) 119
BfaI CTAG 6 cut(s) 120, 258, 738, 764, 833, 974
BfoI RGCGCY 1 cut(s) 29
BfrI CTTAAG 1 cut(s) 901
BisI GCNGC 6 cut(s) 150, 387, 771, 822, 846, 858
BlsI GCNGC 6 cut(s) 151, 388, 772, 823, 847, 859
Bme1390I CCNGG 2 cut(s) 397, 563
BmeRI GACNNNNNGTC 1 cut(s) 397
BmgT120I GGNCC 3 cut(s) 254, 640, 926
BmiI GGNNCC 1 cut(s) 175
BmrFI CCNGG 2 cut(s) 397, 563
BmrI ACTGGG 1 cut(s) 923
BmsI GCATC 1 cut(s) 583
BmuI ACTGGG 1 cut(s) 923
BpiI GAAGAC 2 cut(s) 501, 599
BpuEI CTTGAG 1 cut(s) 460
BsaAI YACGTR 1 cut(s) 98
BsaBI GATNNNNATC 1 cut(s) 1028
BsaHI GRCGYC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 562
Bse1I ACTGG 1 cut(s) 929
Bse3DI GCAATG 1 cut(s) 321
Bse8I GATNNNNATC 1 cut(s) 1028
BseBI CCWGG 2 cut(s) 397, 563
BseDI CCNNGG 1 cut(s) 562
BseJI GATNNNNATC 1 cut(s) 1028
BseMI GCAATG 1 cut(s) 321
BseMII CTCAG 3 cut(s) 213, 573, 634
BseNI ACTGG 1 cut(s) 929
BseXI GCAGC 5 cut(s) 136, 398, 757, 808, 869
BsgI GTGCAG 1 cut(s) 656
Bsh1236I CGCG 1 cut(s) 370
BshFI GGCC 5 cut(s) 255, 421, 641, 848, 927
BshNI GGYRCC 1 cut(s) 173
BsiHKAI GWGCWC 2 cut(s) 145, 675
BsnI GGCC 5 cut(s) 255, 421, 641, 848, 927
Bsp1286I GDGCHC 3 cut(s) 145, 588, 675
Bsp143I GATC 4 cut(s) 181, 328, 677, 1023
Bsp68I TCGCGA 1 cut(s) 370
BspACI CCGC 3 cut(s) 31, 845, 1052
BspANI GGCC 5 cut(s) 255, 421, 641, 848, 927
BspCNI CTCAG 3 cut(s) 214, 574, 633
BspFNI CGCG 1 cut(s) 370
BspLI GGNNCC 1 cut(s) 175
BspPI GGATC 3 cut(s) 176, 336, 1018
BspQI GCTCTTC 1 cut(s) 330
BspT107I GGYRCC 1 cut(s) 173
BspTI CTTAAG 1 cut(s) 901
BsrBI CCGCTC 1 cut(s) 845
BsrDI GCAATG 1 cut(s) 321
BsrI ACTGG 1 cut(s) 929
BssECI CCNNGG 1 cut(s) 562
BssMI GATC 4 cut(s) 181, 328, 677, 1023
BssNI GRCGYC 1 cut(s) 393
Bst2UI CCWGG 2 cut(s) 397, 563
Bst6I CTCTTC 2 cut(s) 318, 330
BstACI GRCGYC 1 cut(s) 393
BstAFI CTTAAG 1 cut(s) 901
BstAPI GCANNNNNTGC 1 cut(s) 1010
BstBAI YACGTR 1 cut(s) 98
BstC8I GCNNGC 3 cut(s) 444, 639, 1002
BstDEI CTNAG 3 cut(s) 222, 582, 620
BstEII GGTNACC 1 cut(s) 1047
BstFNI CGCG 1 cut(s) 370
BstH2I RGCGCY 1 cut(s) 29
BstHHI GCGC 2 cut(s) 28, 665
BstKTI GATC 4 cut(s) 184, 331, 680, 1026
BstMBI GATC 4 cut(s) 181, 328, 677, 1023
BstMWI GCNNNNNNNGC 8 cut(s) 149, 199, 267, 392, 647, 854, 906, 1010
BstNI CCWGG 2 cut(s) 397, 563
BstPI GGTNACC 1 cut(s) 1047
BstSCI CCNGG 2 cut(s) 395, 561
BstSNI TACGTA 1 cut(s) 98
BstUI CGCG 1 cut(s) 370
BstV1I GCAGC 5 cut(s) 136, 398, 757, 808, 869
BstV2I GAAGAC 2 cut(s) 501, 599
BstX2I RGATCY 2 cut(s) 328, 1023
BstXI CCANNNNNNTGG 1 cut(s) 936
BstYI RGATCY 2 cut(s) 328, 1023
BsuRI GGCC 5 cut(s) 255, 421, 641, 848, 927
BtsI GCAGTG 1 cut(s) 453
BtsIMutI CAGTG 2 cut(s) 453, 936
BtuMI TCGCGA 1 cut(s) 370
Cac8I GCNNGC 3 cut(s) 444, 639, 1002
CfoI GCGC 2 cut(s) 28, 665
Cfr13I GGNCC 3 cut(s) 254, 640, 926
CseI GACGC 1 cut(s) 401
CviAII CATG 2 cut(s) 146, 910
DdeI CTNAG 3 cut(s) 222, 582, 620
DpnI GATC 4 cut(s) 183, 330, 679, 1025
DpnII GATC 4 cut(s) 181, 328, 677, 1023
DraI TTTAAA 1 cut(s) 654
DriI GACNNNNNGTC 1 cut(s) 397
Eam1104I CTCTTC 2 cut(s) 318, 330
Eam1105I GACNNNNNGTC 1 cut(s) 397
EarI CTCTTC 2 cut(s) 318, 330
EciI GGCGGA 1 cut(s) 20
Ecl136II GAGCTC 1 cut(s) 673
Eco105I TACGTA 1 cut(s) 98
Eco24I GRGCYC 2 cut(s) 588, 675
Eco32I GATATC 1 cut(s) 893
Eco53kI GAGCTC 1 cut(s) 673
Eco57I CTGAAG 2 cut(s) 250, 513
Eco91I GGTNACC 1 cut(s) 1047
EcoICRI GAGCTC 1 cut(s) 673
EcoO109I RGGNCCY 1 cut(s) 640
EcoO65I GGTNACC 1 cut(s) 1047
EcoRI GAATTC 1 cut(s) 575
EcoRII CCWGG 2 cut(s) 395, 561
EcoRV GATATC 1 cut(s) 893
EcoT38I GRGCYC 2 cut(s) 588, 675
FaeI CATG 2 cut(s) 149, 913
FalI AAGNNNNNCTT 2 cut(s) 315, 347
FatI CATG 2 cut(s) 145, 909
FblI GTMKAC 2 cut(s) 113, 306
Fnu4HI GCNGC 6 cut(s) 150, 387, 771, 822, 846, 858
FriOI GRGCYC 2 cut(s) 588, 675
Fsp4HI GCNGC 6 cut(s) 150, 387, 771, 822, 846, 858
FspBI CTAG 6 cut(s) 120, 258, 738, 764, 833, 974
GlaI GCGC 2 cut(s) 27, 664
GluI GCNGC 6 cut(s) 150, 387, 771, 822, 846, 858
HaeII RGCGCY 1 cut(s) 29
HaeIII GGCC 5 cut(s) 255, 421, 641, 848, 927
HgaI GACGC 1 cut(s) 401
HhaI GCGC 2 cut(s) 28, 665
Hin1I GRCGYC 1 cut(s) 393
Hin1II CATG 2 cut(s) 149, 913
Hin6I GCGC 2 cut(s) 26, 663
HinP1I GCGC 2 cut(s) 26, 663
HincII GTYRAC 3 cut(s) 307, 402, 489
HindII GTYRAC 3 cut(s) 307, 402, 489
HinfI GANTC 8 cut(s) 218, 243, 365, 372, 548, 618, 836, 993
HphI GGTGA 1 cut(s) 46
Hpy166II GTNNAC 6 cut(s) 6, 114, 307, 402, 489, 812
Hpy188I TCNGA 5 cut(s) 223, 583, 592, 677, 803
Hpy188III TCNNGA 8 cut(s) 159, 185, 332, 369, 552, 833, 840, 888
Hpy8I GTNNAC 6 cut(s) 6, 114, 307, 402, 489, 812
Hpy99I CGWCG 1 cut(s) 217
HpyAV CCTTC 4 cut(s) 527, 625, 685, 748
HpyCH4IV ACGT 3 cut(s) 97, 106, 404
HpyCH4V TGCA 7 cut(s) 314, 446, 637, 857, 875, 989, 1019
HpyF10VI GCNNNNNNNGC 8 cut(s) 149, 199, 267, 392, 647, 854, 906, 1010
HpyF3I CTNAG 3 cut(s) 222, 582, 620
HpySE526I ACGT 3 cut(s) 97, 106, 404
Hsp92I GRCGYC 1 cut(s) 393
Hsp92II CATG 2 cut(s) 149, 913
HspAI GCGC 2 cut(s) 26, 663
Kzo9I GATC 4 cut(s) 181, 328, 677, 1023
LguI GCTCTTC 1 cut(s) 330
LmnI GCTCC 2 cut(s) 33, 678
Lsp1109I GCAGC 5 cut(s) 136, 398, 757, 808, 869
LweI GCATC 1 cut(s) 583
MaeI CTAG 6 cut(s) 120, 258, 738, 764, 833, 974
MaeII ACGT 3 cut(s) 97, 106, 404
MaeIII GTNAC 1 cut(s) 1047
MalI GATC 4 cut(s) 183, 330, 679, 1025
MbiI CCGCTC 1 cut(s) 845
MboI GATC 4 cut(s) 181, 328, 677, 1023
MboII GAAGA 5 cut(s) 335, 347, 506, 557, 599
MflI RGATCY 2 cut(s) 328, 1023
MhlI GDGCHC 3 cut(s) 145, 588, 675
MluCI AATT 6 cut(s) 188, 347, 482, 575, 815, 1005
MlyI GAGTC 3 cut(s) 212, 612, 845
MmeI TCCRAC 2 cut(s) 395, 552
MnlI CCTC 8 cut(s) 22, 44, 120, 319, 337, 392, 411, 598
MroXI GAANNNNTTC 1 cut(s) 758
MseI TTAA 5 cut(s) 407, 461, 653, 828, 902
MslI CAYNNNNRTG 1 cut(s) 968
MspA1I CMGCKG 1 cut(s) 389
MspCI CTTAAG 1 cut(s) 901
MspR9I CCNGG 2 cut(s) 397, 563
MvaI CCWGG 2 cut(s) 397, 563
MvnI CGCG 1 cut(s) 370
MwoI GCNNNNNNNGC 8 cut(s) 149, 199, 267, 392, 647, 854, 906, 1010
NdeII GATC 4 cut(s) 181, 328, 677, 1023
NlaIII CATG 2 cut(s) 149, 913
NlaIV GGNNCC 1 cut(s) 175
NmeAIII GCCGAG 1 cut(s) 903
NruI TCGCGA 1 cut(s) 370
PciSI GCTCTTC 1 cut(s) 330
PcsI WCGNNNNNNNCGW 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 758
PfeI GAWTC 5 cut(s) 243, 365, 372, 548, 993
PflFI GACNNNGTC 1 cut(s) 621
PkrI GCNGC 6 cut(s) 151, 388, 772, 823, 847, 859
PleI GAGTC 3 cut(s) 212, 612, 844
PpsI GAGTC 3 cut(s) 212, 612, 844
Ppu21I YACGTR 1 cut(s) 98
PshBI ATTAAT 1 cut(s) 828
Psp124BI GAGCTC 1 cut(s) 675
Psp1406I AACGTT 1 cut(s) 404
Psp6I CCWGG 2 cut(s) 395, 561
PspEI GGTNACC 1 cut(s) 1047
PspGI CCWGG 2 cut(s) 395, 561
PspN4I GGNNCC 1 cut(s) 175
PspPI GGNCC 3 cut(s) 254, 640, 926
PsuI RGATCY 2 cut(s) 328, 1023
PsyI GACNNNGTC 1 cut(s) 621
PvuII CAGCTG 1 cut(s) 389
RruI TCGCGA 1 cut(s) 370
RseI CAYNNNNRTG 1 cut(s) 968
SacI GAGCTC 1 cut(s) 675
SalI GTCGAC 1 cut(s) 305
SapI GCTCTTC 1 cut(s) 330
SaqAI TTAA 5 cut(s) 407, 461, 653, 828, 902
SatI GCNGC 6 cut(s) 150, 387, 771, 822, 846, 858
Sau3AI GATC 4 cut(s) 181, 328, 677, 1023
Sau96I GGNCC 3 cut(s) 254, 640, 926
SchI GAGTC 3 cut(s) 212, 612, 845
ScrFI CCNGG 2 cut(s) 397, 563
SduI GDGCHC 3 cut(s) 145, 588, 675
SfaNI GCATC 1 cut(s) 583
SmiMI CAYNNNNRTG 1 cut(s) 968
SmlI CTYRAG 2 cut(s) 475, 901
SmoI CTYRAG 2 cut(s) 475, 901
SnaBI TACGTA 1 cut(s) 98
SpeI ACTAGT 1 cut(s) 119
Sse9I AATT 6 cut(s) 188, 347, 482, 575, 815, 1005
SsiI CCGC 3 cut(s) 31, 845, 1052
SspMI CTAG 6 cut(s) 120, 258, 738, 764, 833, 974
SstI GAGCTC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 395, 561
TaiI ACGT 3 cut(s) 100, 109, 407
TaqI TCGA 1 cut(s) 306
TasI AATT 6 cut(s) 188, 347, 482, 575, 815, 1005
TauI GCSGC 1 cut(s) 848
TfiI GAWTC 5 cut(s) 243, 365, 372, 548, 993
Tru1I TTAA 5 cut(s) 407, 461, 653, 828, 902
Tru9I TTAA 5 cut(s) 407, 461, 653, 828, 902
TscAI CASTG 2 cut(s) 453, 936
TseI GCWGC 5 cut(s) 149, 386, 770, 821, 857
TspDTI ATGAA 1 cut(s) 509
TspGWI ACGGA 3 cut(s) 187, 230, 1016
TspRI CASTG 2 cut(s) 453, 936
Tth111I GACNNNGTC 1 cut(s) 621
Vha464I CTTAAG 1 cut(s) 901
VspI ATTAAT 1 cut(s) 828
XapI RAATTY 2 cut(s) 347, 575
XbaI TCTAGA 1 cut(s) 832
XmiI GTMKAC 2 cut(s) 113, 306
XmnI GAANNNNTTC 1 cut(s) 758
XspI CTAG 6 cut(s) 120, 258, 738, 764, 833, 974
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.