AT1G73940

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0016006
Physical Location & Seq
Reverse (-)
27798237 .. 27799695
1459 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G73940.1

Sequence Viewer

Length: 456 bp
ATGTGGTTCGCCGGCGGTGGTGGTGGACTGAGGAAGCTCTGCAGAGCGTCGGCTATTTTCGATAATGAGATAAGTTATAACTCTTTGTTGGTGAGATACATGTCCAGAGAACGAGCTGTGAACGTCCGGAAGATAAACCCTAAAGTTCCGATCCAAGAAGCTTACGCCATTTCTAATTCTCTCTACGATCTCTTTAAGCTACATGGTCCTCTCTCCGTTCCCAACACTTGGCTCCGCGCTCAGGAAGCTGGGGTTAGTGGACTGAATAGCAAAACACATATGAAGCTATTGTTGAAATGGATGAGAGGGAAAAAGATGCTCAAGTTAATCTGCAACCAAGTTGGTTCCTCCAAAAAGTTTTTCCACACTGTTTTACCTGAAGATCCTCTACAAGAACAACCGGCTGCTCCGATTGAGAACAAGAAACAAGCCGTCAAGAAGAAACGAAGCAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

151

Amino Acids

17.08

Weight (kDa)

10.24

Isoelectric Point (pI)

50.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 78
AccB7I CCANNNNNTGG 1 cut(s) 228
AccII CGCG 1 cut(s) 237
AccIII TCCGGA 1 cut(s) 126
AciI CCGC 2 cut(s) 15, 235
AclWI GGATC 2 cut(s) 145, 377
AcuI CTGAAG 1 cut(s) 399
AfiI CCNNNNNNNGG 2 cut(s) 228, 241
AflIII ACRYGT 1 cut(s) 99
AgsI TTSAA 1 cut(s) 295
AjuI GAANNNNNNNTTGG 2 cut(s) 344, 376
AluBI AGCT 6 cut(s) 37, 116, 161, 199, 248, 286
AluI AGCT 6 cut(s) 37, 116, 161, 199, 248, 286
AlwI GGATC 2 cut(s) 145, 377
Aor13HI TCCGGA 1 cut(s) 126
ApeKI GCWGC 1 cut(s) 404
AspLEI GCGC 1 cut(s) 239
AspS9I GGNCC 1 cut(s) 206
AsuHPI GGTGA 1 cut(s) 103
AvaII GGWCC 1 cut(s) 206
BarI GAAGNNNNNNTAC 2 cut(s) 372, 404
BbvI GCAGC 1 cut(s) 391
BceAI ACGGC 1 cut(s) 416
BfmI CTRYAG 1 cut(s) 40
BisI GCNGC 1 cut(s) 405
BlsI GCNGC 1 cut(s) 406
Bme18I GGWCC 1 cut(s) 206
BmgT120I GGNCC 1 cut(s) 206
BmiI GGNNCC 2 cut(s) 233, 346
BmsI GCATC 1 cut(s) 306
Bpu10I CCTNAGC 1 cut(s) 240
BpuEI CTTGAG 1 cut(s) 305
BsaWI WCCGGW 1 cut(s) 126
Bsc4I CCNNNNNNNGG 2 cut(s) 228, 241
Bse118I RCCGGY 2 cut(s) 11, 400
BseAI TCCGGA 1 cut(s) 126
BseGI GGATG 1 cut(s) 306
BseLI CCNNNNNNNGG 2 cut(s) 228, 241
BseMII CTCAG 2 cut(s) 20, 254
BseXI GCAGC 1 cut(s) 391
BseYI CCCAGC 1 cut(s) 248
Bsh1236I CGCG 1 cut(s) 237
BsiSI CCGG 3 cut(s) 12, 127, 401
BslI CCNNNNNNNGG 2 cut(s) 228, 241
Bsp13I TCCGGA 1 cut(s) 126
Bsp143I GATC 3 cut(s) 150, 187, 382
BspACI CCGC 2 cut(s) 15, 235
BspCNI CTCAG 2 cut(s) 21, 253
BspEI TCCGGA 1 cut(s) 126
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 2 cut(s) 233, 346
BspMAI CTGCAG 1 cut(s) 44
BspPI GGATC 2 cut(s) 145, 377
BsrFI RCCGGY 2 cut(s) 11, 400
BssAI RCCGGY 2 cut(s) 11, 400
BssMI GATC 3 cut(s) 150, 187, 382
Bst4CI ACNGT 1 cut(s) 370
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 2 cut(s) 29, 240
BstF5I GGATG 1 cut(s) 306
BstFNI CGCG 1 cut(s) 237
BstHHI GCGC 1 cut(s) 239
BstKTI GATC 3 cut(s) 153, 190, 385
BstMBI GATC 3 cut(s) 150, 187, 382
BstMWI GCNNNNNNNGC 1 cut(s) 245
BstNSI RCATGY 1 cut(s) 103
BstSFI CTRYAG 1 cut(s) 40
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 391
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BtsCI GGATG 1 cut(s) 306
BtsIMutI CAGTG 1 cut(s) 366
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 1 cut(s) 239
Cfr10I RCCGGY 2 cut(s) 11, 400
Cfr13I GGNCC 1 cut(s) 206
CseI GACGC 1 cut(s) 36
CviAII CATG 2 cut(s) 100, 203
DdeI CTNAG 2 cut(s) 29, 240
DpnI GATC 3 cut(s) 152, 189, 384
DpnII GATC 3 cut(s) 150, 187, 382
Eco47I GGWCC 1 cut(s) 206
Eco57I CTGAAG 1 cut(s) 399
FaeI CATG 2 cut(s) 103, 206
FaiI YATR 5 cut(s) 78, 101, 204, 279, 281
FatI CATG 2 cut(s) 99, 202
FauNDI CATATG 1 cut(s) 279
Fnu4HI GCNGC 1 cut(s) 405
FokI GGATG 1 cut(s) 313
Fsp4HI GCNGC 1 cut(s) 405
GlaI GCGC 1 cut(s) 238
GluI GCNGC 1 cut(s) 405
GsaI CCCAGC 1 cut(s) 252
HapII CCGG 3 cut(s) 12, 127, 401
HgaI GACGC 1 cut(s) 36
HhaI GCGC 1 cut(s) 239
Hin1II CATG 2 cut(s) 103, 206
Hin6I GCGC 1 cut(s) 237
HinP1I GCGC 1 cut(s) 237
HindIII AAGCTT 1 cut(s) 159
HpaII CCGG 3 cut(s) 12, 127, 401
HphI GGTGA 1 cut(s) 103
Hpy166II GTNNAC 3 cut(s) 26, 121, 260
Hpy188I TCNGA 2 cut(s) 150, 411
Hpy188III TCNNGA 4 cut(s) 105, 127, 242, 436
Hpy8I GTNNAC 3 cut(s) 26, 121, 260
Hpy99I CGWCG 1 cut(s) 52
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 2 cut(s) 42, 333
HpyF10VI GCNNNNNNNGC 1 cut(s) 245
HpyF3I CTNAG 2 cut(s) 29, 240
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 2 cut(s) 103, 206
HspAI GCGC 1 cut(s) 237
Kpn2I TCCGGA 1 cut(s) 126
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
Kzo9I GATC 3 cut(s) 150, 187, 382
LmnI GCTCC 2 cut(s) 237, 412
LpnPI CCDG 7 cut(s) 25, 118, 140, 227, 234, 390, 414
Lsp1109I GCAGC 1 cut(s) 391
LweI GCATC 1 cut(s) 306
MaeII ACGT 1 cut(s) 123
MalI GATC 3 cut(s) 152, 189, 384
MboI GATC 3 cut(s) 150, 187, 382
MboII GAAGA 3 cut(s) 142, 392, 451
MflI RGATCY 1 cut(s) 382
MluCI AATT 1 cut(s) 175
MnlI CCTC 5 cut(s) 24, 219, 299, 358, 396
MreI CGCCGGCG 1 cut(s) 11
MroI TCCGGA 1 cut(s) 126
MroNI GCCGGC 1 cut(s) 11
MseI TTAA 2 cut(s) 195, 326
MspI CCGG 3 cut(s) 12, 127, 401
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 245
NaeI GCCGGC 1 cut(s) 13
NdeI CATATG 1 cut(s) 279
NdeII GATC 3 cut(s) 150, 187, 382
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 103, 206
NlaIV GGNNCC 2 cut(s) 233, 346
NspI RCATGY 1 cut(s) 103
PciI ACATGT 1 cut(s) 99
PdiI GCCGGC 1 cut(s) 13
PflMI CCANNNNNTGG 1 cut(s) 228
PkrI GCNGC 1 cut(s) 406
PscI ACATGT 1 cut(s) 99
PsiI TTATAA 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 248
PspN4I GGNNCC 2 cut(s) 233, 346
PspPI GGNCC 1 cut(s) 206
PstI CTGCAG 1 cut(s) 44
PsuI RGATCY 1 cut(s) 382
SaqAI TTAA 2 cut(s) 195, 326
SatI GCNGC 1 cut(s) 405
Sau3AI GATC 3 cut(s) 150, 187, 382
Sau96I GGNCC 1 cut(s) 206
SetI ASST 8 cut(s) 39, 118, 126, 163, 201, 250, 288, 379
SfaNI GCATC 1 cut(s) 306
SfcI CTRYAG 1 cut(s) 40
SgrAI CRCCGGYG 1 cut(s) 11
SinI GGWCC 1 cut(s) 206
SmlI CTYRAG 1 cut(s) 320
SmoI CTYRAG 1 cut(s) 320
Sse9I AATT 1 cut(s) 175
SsiI CCGC 2 cut(s) 15, 235
TaaI ACNGT 1 cut(s) 370
TaiI ACGT 1 cut(s) 126
TaqI TCGA 1 cut(s) 60
TasI AATT 1 cut(s) 175
Tru1I TTAA 2 cut(s) 195, 326
Tru9I TTAA 2 cut(s) 195, 326
TscAI CASTG 1 cut(s) 373
TseI GCWGC 1 cut(s) 404
TspDTI ATGAA 1 cut(s) 296
TspGWI ACGGA 1 cut(s) 205
TspRI CASTG 1 cut(s) 373
Van91I CCANNNNNTGG 1 cut(s) 228
VpaK11BI GGWCC 1 cut(s) 206
XceI RCATGY 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.