FvH4_5g10193

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0016006
Physical Location & Seq
Forward (+)
5834840 .. 5836766
1927 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g10193.t1

Sequence Viewer

Length: 474 bp
ATGTGGTTAGCTAGTCGCGCATTTAGGGTTTCTTCCGGTGCTAATTGTACTGGGAATGGTTTGATTGGAGCTGCAACGGCGTCGTTTTCGAGGTACTTCTCTCGGGAGCGCGCCGAGAATCTGAGGAAAATCAACCCTAAGGTCAGCTTCCCGGAGGCGAATTCAATTGCGACGGAGCTATACGACGTCGTCAAGCAACATGGACCTATCACCATCCCCAATACTTGGGCTCAGGCCAAGGAGTCTGGTGTTAGTGGATTGAACAGCAAAACACACATGAAGATAATGCTCAAGTGGATGAGAGGAAGGAAGATGCTGAAGCTGTTCCCCAACCAAGTTGGTTCAAACAAAAAATTCTTGTTATGTACACTGCCTGAAGACCCTCATGTTACTGAGTTTATAAATTCAACCGCAGTAAAAGTGCAATCTAAGAAGCCTTCCTCCAAGAAGAAAAAGCAAAAGCAGAGGAGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

158

Amino Acids

17.62

Weight (kDa)

10.59

Isoelectric Point (pI)

36.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 401
AatII GACGTC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 225
AccII CGCG 2 cut(s) 18, 111
AciI CCGC 1 cut(s) 411
AcsI RAATTY 3 cut(s) 160, 353, 403
AcuI CTGAAG 2 cut(s) 338, 396
AcyI GRCGYC 2 cut(s) 80, 186
AfaI GTAC 3 cut(s) 49, 95, 367
AfiI CCNNNNNNNGG 1 cut(s) 225
AgsI TTSAA 4 cut(s) 165, 262, 345, 408
AluBI AGCT 5 cut(s) 11, 71, 147, 178, 322
AluI AGCT 5 cut(s) 11, 71, 147, 178, 322
Ama87I CYCGRG 1 cut(s) 102
AoxI GGCC 1 cut(s) 234
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 3 cut(s) 160, 353, 403
Asp700I GAANNNNTTC 1 cut(s) 323
AspLEI GCGC 3 cut(s) 20, 111, 113
AspS9I GGNCC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 152
AsuHPI GGTGA 1 cut(s) 202
AvaI CYCGRG 1 cut(s) 102
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 138
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 58
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BcnI CCSGG 1 cut(s) 152
BfaI CTAG 1 cut(s) 12
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
Bme1390I CCNGG 1 cut(s) 152
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 1 cut(s) 102
BmgT120I GGNCC 1 cut(s) 203
BmrFI CCNGG 1 cut(s) 152
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 1 cut(s) 303
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 1 cut(s) 384
Bpu10I CCTNAGC 1 cut(s) 231
BpuEI CTTGAG 1 cut(s) 275
BpuMI CCSGG 1 cut(s) 152
BsaHI GRCGYC 2 cut(s) 80, 186
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 35
Bsc4I CCNNNNNNNGG 1 cut(s) 225
Bse1I ACTGG 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 213, 303
BseLI CCNNNNNNNGG 1 cut(s) 225
BseMII CTCAG 3 cut(s) 113, 245, 384
BseNI ACTGG 1 cut(s) 55
BsePI GCGCGC 1 cut(s) 109
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 2 cut(s) 18, 111
BshFI GGCC 1 cut(s) 236
BsiHKCI CYCGRG 1 cut(s) 102
BsiSI CCGG 2 cut(s) 36, 152
BslI CCNNNNNNNGG 1 cut(s) 225
BsnI GGCC 1 cut(s) 236
BsoBI CYCGRG 1 cut(s) 102
Bsp1286I GDGCHC 1 cut(s) 232
Bsp1407I TGTACA 1 cut(s) 365
BspACI CCGC 1 cut(s) 411
BspANI GGCC 1 cut(s) 236
BspCNI CTCAG 3 cut(s) 114, 244, 385
BspFNI CGCG 2 cut(s) 18, 111
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 1 cut(s) 237
BssHII GCGCGC 1 cut(s) 109
BssNI GRCGYC 2 cut(s) 80, 186
BssT1I CCWWGG 1 cut(s) 237
BstACI GRCGYC 2 cut(s) 80, 186
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 111
BstDEI CTNAG 5 cut(s) 122, 138, 231, 393, 429
BstF5I GGATG 2 cut(s) 213, 303
BstFNI CGCG 2 cut(s) 18, 111
BstHHI GCGC 3 cut(s) 20, 111, 113
BstMWI GCNNNNNNNGC 2 cut(s) 17, 77
BstSCI CCNGG 1 cut(s) 150
BstUI CGCG 2 cut(s) 18, 111
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 384
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 1 cut(s) 236
BtsCI GGATG 2 cut(s) 213, 303
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 1 cut(s) 111
CfoI GCGC 3 cut(s) 20, 111, 113
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 1 cut(s) 69
Csp6I GTAC 3 cut(s) 48, 94, 366
CviAII CATG 3 cut(s) 200, 277, 386
CviJI RGCY 8 cut(s) 11, 71, 147, 178, 230, 236, 322, 436
CviKI_1 RGCY 8 cut(s) 11, 71, 147, 178, 230, 236, 322, 436
CviQI GTAC 3 cut(s) 48, 94, 366
DdeI CTNAG 5 cut(s) 122, 138, 231, 393, 429
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 203
Eco57I CTGAAG 2 cut(s) 338, 396
Eco81I CCTNAGG 1 cut(s) 138
Eco88I CYCGRG 1 cut(s) 102
EcoRI GAATTC 1 cut(s) 160
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 3 cut(s) 203, 280, 389
FaiI YATR 6 cut(s) 181, 201, 278, 364, 387, 401
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 3 cut(s) 199, 276, 385
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 200, 310
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 12
GlaI GCGC 3 cut(s) 19, 110, 112
GluI GCNGC 1 cut(s) 72
HaeIII GGCC 1 cut(s) 236
HapII CCGG 2 cut(s) 36, 152
HgaI GACGC 1 cut(s) 69
HhaI GCGC 3 cut(s) 20, 111, 113
Hin1I GRCGYC 2 cut(s) 80, 186
Hin1II CATG 3 cut(s) 203, 280, 389
Hin6I GCGC 3 cut(s) 18, 109, 111
HinP1I GCGC 3 cut(s) 18, 109, 111
HinfI GANTC 2 cut(s) 118, 242
HpaII CCGG 2 cut(s) 36, 152
HphI GGTGA 1 cut(s) 202
Hpy166II GTNNAC 1 cut(s) 368
Hpy188I TCNGA 1 cut(s) 123
Hpy188III TCNNGA 1 cut(s) 104
Hpy8I GTNNAC 1 cut(s) 368
Hpy99I CGWCG 4 cut(s) 85, 175, 188, 191
HpyAV CCTTC 2 cut(s) 300, 447
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 2 cut(s) 74, 424
HpyF10VI GCNNNNNNNGC 2 cut(s) 17, 77
HpyF3I CTNAG 5 cut(s) 122, 138, 231, 393, 429
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 2 cut(s) 80, 186
Hsp92II CATG 3 cut(s) 203, 280, 389
HspAI GCGC 3 cut(s) 18, 109, 111
LmnI GCTCC 3 cut(s) 68, 106, 175
LpnPI CCDG 6 cut(s) 36, 49, 165, 218, 231, 387
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 1 cut(s) 303
MaeI CTAG 1 cut(s) 12
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 1 cut(s) 388
MboII GAAGA 5 cut(s) 24, 292, 322, 389, 460
MfeI CAATTG 1 cut(s) 165
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 5 cut(s) 43, 160, 165, 353, 403
MlyI GAGTC 1 cut(s) 251
MnlI CCTC 8 cut(s) 84, 117, 148, 296, 393, 451, 459, 462
MroXI GAANNNNTTC 1 cut(s) 323
MspI CCGG 2 cut(s) 36, 152
MspR9I CCNGG 1 cut(s) 152
MunI CAATTG 1 cut(s) 165
MvnI CGCG 2 cut(s) 18, 111
MwoI GCNNNNNNNGC 2 cut(s) 17, 77
NciI CCSGG 1 cut(s) 152
NlaIII CATG 3 cut(s) 203, 280, 389
NmeAIII GCCGAG 1 cut(s) 139
PauI GCGCGC 1 cut(s) 109
PdmI GAANNNNTTC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 118
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 225
PfoI TCCNGGA 1 cut(s) 150
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 1 cut(s) 250
PpsI GAGTC 1 cut(s) 250
PsiI TTATAA 1 cut(s) 401
PspPI GGNCC 1 cut(s) 203
PsyI GACNNNGTC 1 cut(s) 188
PteI GCGCGC 1 cut(s) 109
RsaI GTAC 3 cut(s) 49, 95, 367
RsaNI GTAC 3 cut(s) 48, 94, 366
SatI GCNGC 1 cut(s) 72
Sau96I GGNCC 1 cut(s) 203
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 152
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 1 cut(s) 303
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 1 cut(s) 290
SmoI CTYRAG 1 cut(s) 290
Sse9I AATT 5 cut(s) 43, 160, 165, 353, 403
SsiI CCGC 1 cut(s) 411
SspMI CTAG 1 cut(s) 12
StyD4I CCNGG 1 cut(s) 150
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 89
TasI AATT 5 cut(s) 43, 160, 165, 353, 403
TatI WGTACW 2 cut(s) 47, 365
TfiI GAWTC 1 cut(s) 118
TscAI CASTG 1 cut(s) 375
TseI GCWGC 1 cut(s) 71
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 1 cut(s) 188
TspRI CASTG 1 cut(s) 375
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 203
XapI RAATTY 3 cut(s) 160, 353, 403
XmnI GAANNNNTTC 1 cut(s) 323
XspI CTAG 1 cut(s) 12
ZraI GACGTC 1 cut(s) 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.