Rh7BG093500

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0016006
Physical Location & Seq
Reverse (-)
6887097 .. 6892512
5416 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG093500.1

Sequence Viewer

Length: 1449 bp
ATGTGGTTTGCTGGTCGTGCGATTAGGGCTTCTTGCAGTACTAATTGTACTGGGAGTGGTTTGATTAGAGCTGCAACGGCGTCGTTTGCTAGGTACTTCTCTCGGGAACGCGCAGAGAATTTGAGGAAAATCAACCCTAAGGTCAGCTTTCCGGAGGCGAATTCAATTGCTCGGGATCTATACGACGTCGTCAAGCAACATGGACCTATCACCATCCCCAATACTTGGGCTCAAGCCAAGGAGTCTGGTGTTAGTGGATTGAATAGCAAAACACACATGAAGATAATGCTCAAATGGATGAGAGGAAGGAAGATGCTGAAGCTGTTTCCCAACCAAGTTGGCTCAAACAAAAAATTCTTGTTATGTACACTGCCTGAAGACCCTCATGTTACTGAGTTTAGAACTTCCACCGCAGTAAAAGTGTTATCTAAGAAGCCTTCCTCCAAGAGGAAAAAGCAAAAGCAAAAGAGGGATCTTGGAACCGATGATGTTTCCATAAGAATTACTCATTGCGGAGTTTGTTATGCTGATGTGATTTGGACCAGAAATAAGCATGGAGACTCCAAGTACCCTCTAGTGCCTGGACATGAGATTGCGGGTATTGTAAAAGAGGTAGGTTCAAATGTCAAGCGGTTCAAAGTCGGTGACCATGTTGGAGTGGGAACCTATGTCAACTCATGCAGAGATTGTGAGTATTGCAATGATAGACTTGAAGTTCAGTGCGTAAAGGGATCAGTTTTCACTTTTAATGGTGTTGATGCTGATGGTACAATTACGAAAGGGGGATACTCCAGTCATATAGTTGTTCACGATAGGTACTGCTACAAGATACCTGATAACTATCCATTGGCTTCCGCAGCACCTTTGCTTTGTGCTGGAATTACTGTTTATGCTCCTATGATGCGCCATAAGATGAACCAACCCGGTAAATCTCTAGGCGTGATTGGGCTTGGTGGTCTTGGTCACATGGCAGTGAAGTTTGGAAAGGCATTTGGTTTGAATGTAACAGTTTTCAGCACAAGCATATCCAAGAAAGAGGAAGCCTTAAGTCTGCTTGGTGCAGATAAATTTGTGGTCTCATCTGACCAAGAGCAGATGAAGGCTTTGGTGAAGTCACTTGACTTTATAGTTGACACAGCGTCTGGTGATCACCCATTTGATCCATACATGGCATTGTTGAAGACTGGTGGAATTTTCGTCTTGGTGGGATTCCCCAGTGAAGTCAAATTCAGTCCTGCAAACCTTAATCGAGGTATGAAAACCATTTCTGGTAGTATAACGGGTGGAACAAAGGATACACAAGAAATGATAGATTTCTGTGCTGCTCATGGAATCCACCCAATGATTGAAGTAATTCCAATTCAATATGCAAATGAAGCTATTGACAGGCTTACAAAAAGAGAAGTGAAATACCGGTTTGTGATTGACATTGAAAACTCCCTGAAATGA

Protein Analysis

482

Amino Acids

53.07

Weight (kDa)

9.47

Isoelectric Point (pI)

25.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 161 - 279 3.1e-24 Alcohol dehydrogenase GroES-like domain
ADH_zinc_N PF00107 319 - 441 2.1e-19 Zinc-binding dehydrogenase
ADH_zinc_N_2 PF13602 352 - 467 9.7e-07 Zinc-binding dehydrogenase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 225
AccII CGCG 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 5 cut(s) 411, 513, 596, 631, 855
AclWI GGATC 4 cut(s) 183, 480, 739, 1154
AcsI RAATTY 6 cut(s) 118, 160, 353, 1067, 1191, 1226
AcuI CTGAAG 2 cut(s) 338, 396
AcyI GRCGYC 2 cut(s) 80, 186
AfaI GTAC 7 cut(s) 40, 49, 95, 367, 569, 769, 818
AfiI CCNNNNNNNGG 2 cut(s) 225, 447
AflII CTTAAG 1 cut(s) 1045
AgeI ACCGGT 1 cut(s) 1413
AhdI GACNNNNNGTC 1 cut(s) 1138
AjnI CCWGG 1 cut(s) 580
AluBI AGCT 4 cut(s) 71, 147, 322, 1379
AluI AGCT 4 cut(s) 71, 147, 322, 1379
Alw26I GTCTC 2 cut(s) 552, 1081
AlwI GGATC 4 cut(s) 183, 480, 739, 1154
AlwNI CAGNNNCTG 1 cut(s) 1142
Ama87I CYCGRG 2 cut(s) 102, 171
Aor13HI TCCGGA 1 cut(s) 151
ApeKI GCWGC 3 cut(s) 71, 857, 1322
ApoI RAATTY 6 cut(s) 118, 160, 353, 1067, 1191, 1226
AsiGI ACCGGT 1 cut(s) 1413
Asp700I GAANNNNTTC 1 cut(s) 1353
AspLEI GCGC 2 cut(s) 113, 906
AspS9I GGNCC 2 cut(s) 203, 540
AsuC2I CCSGG 1 cut(s) 924
AsuHPI GGTGA 5 cut(s) 202, 656, 1120, 1142, 1157
AvaI CYCGRG 2 cut(s) 102, 171
AvaII GGWCC 2 cut(s) 203, 540
AxyI CCTNAGG 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 778, 811
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 384, 1187
BbvI GCAGC 3 cut(s) 58, 869, 1309
BccI CCATC 2 cut(s) 221, 758
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 582
BciVI GTATCC 2 cut(s) 779, 1288
BclI TGATCA 1 cut(s) 1147
BcnI CCSGG 1 cut(s) 924
BcoDI GTCTC 2 cut(s) 552, 1081
BfaI CTAG 3 cut(s) 90, 575, 935
BfrI CTTAAG 1 cut(s) 1045
BfuI GTATCC 2 cut(s) 779, 1288
BisI GCNGC 3 cut(s) 72, 858, 1323
BlsI GCNGC 3 cut(s) 73, 859, 1324
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 2 cut(s) 582, 924
Bme18I GGWCC 2 cut(s) 203, 540
BmeRI GACNNNNNGTC 1 cut(s) 1138
BmeT110I CYCGRG 2 cut(s) 102, 171
BmgT120I GGNCC 2 cut(s) 203, 540
BmiI GGNNCC 2 cut(s) 481, 664
BmrFI CCNGG 2 cut(s) 582, 924
BmrI ACTGGG 2 cut(s) 60, 1209
BmsI GCATC 3 cut(s) 303, 748, 891
BmuI ACTGGG 2 cut(s) 60, 1209
BpiI GAAGAC 2 cut(s) 384, 1187
BpmI CTGGAG 1 cut(s) 775
BpuEI CTTGAG 1 cut(s) 216
BpuMI CCSGG 1 cut(s) 924
BsaBI GATNNNNATC 1 cut(s) 840
BsaHI GRCGYC 2 cut(s) 80, 186
BsaI GGTCTC 1 cut(s) 1081
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 2 cut(s) 151, 1413
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 447
Bse118I RCCGGY 1 cut(s) 1413
Bse1I ACTGG 4 cut(s) 55, 792, 1189, 1215
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 2 cut(s) 508, 706
Bse8I GATNNNNATC 1 cut(s) 840
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 213, 303
BseJI GATNNNNATC 1 cut(s) 840
BseLI CCNNNNNNNGG 2 cut(s) 225, 447
BseMI GCAATG 2 cut(s) 508, 706
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 55, 792, 1189, 1215
BseXI GCAGC 3 cut(s) 58, 869, 1309
BsgI GTGCAG 1 cut(s) 1080
Bsh1236I CGCG 1 cut(s) 111
BshTI ACCGGT 1 cut(s) 1413
BsiHKCI CYCGRG 2 cut(s) 102, 171
BsiSI CCGG 3 cut(s) 152, 924, 1414
BslI CCNNNNNNNGG 2 cut(s) 225, 447
BsmAI GTCTC 2 cut(s) 552, 1081
Bso31I GGTCTC 1 cut(s) 1081
BsoBI CYCGRG 2 cut(s) 102, 171
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 5 cut(s) 175, 472, 731, 1147, 1159
BspACI CCGC 5 cut(s) 411, 513, 596, 631, 855
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 481, 664
BspPI GGATC 4 cut(s) 183, 480, 739, 1154
BspTI CTTAAG 1 cut(s) 1045
BspTNI GGTCTC 1 cut(s) 1081
BsrDI GCAATG 2 cut(s) 508, 706
BsrFI RCCGGY 1 cut(s) 1413
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 4 cut(s) 55, 792, 1189, 1215
BssAI RCCGGY 1 cut(s) 1413
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 5 cut(s) 175, 472, 731, 1147, 1159
BssNI GRCGYC 2 cut(s) 80, 186
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 582
Bst4CI ACNGT 2 cut(s) 886, 1009
BstACI GRCGYC 2 cut(s) 80, 186
BstAFI CTTAAG 1 cut(s) 1045
BstAUI TGTACA 1 cut(s) 365
BstDEI CTNAG 3 cut(s) 138, 393, 429
BstEII GGTNACC 1 cut(s) 644
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 2 cut(s) 213, 303
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 2 cut(s) 113, 906
BstKTI GATC 5 cut(s) 178, 475, 734, 1150, 1162
BstMAI GTCTC 2 cut(s) 552, 1081
BstMBI GATC 5 cut(s) 175, 472, 731, 1147, 1159
BstMWI GCNNNNNNNGC 6 cut(s) 17, 26, 77, 86, 857, 1376
BstNI CCWGG 1 cut(s) 582
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 2 cut(s) 580, 922
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 3 cut(s) 58, 869, 1309
BstV2I GAAGAC 2 cut(s) 384, 1187
BstX2I RGATCY 2 cut(s) 175, 472
BstYI RGATCY 2 cut(s) 175, 472
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 2 cut(s) 779, 1288
BtsCI GGATG 2 cut(s) 213, 303
BtsI GCAGTG 2 cut(s) 368, 978
BtsIMutI CAGTG 4 cut(s) 368, 725, 978, 1222
CaiI CAGNNNCTG 1 cut(s) 1142
CfoI GCGC 2 cut(s) 113, 906
Cfr10I RCCGGY 1 cut(s) 1413
Cfr13I GGNCC 2 cut(s) 203, 540
CseI GACGC 2 cut(s) 69, 1128
Csp6I GTAC 7 cut(s) 39, 48, 94, 366, 568, 768, 817
CspAI ACCGGT 1 cut(s) 1413
CviQI GTAC 7 cut(s) 39, 48, 94, 366, 568, 768, 817
DdeI CTNAG 3 cut(s) 138, 393, 429
DpnI GATC 5 cut(s) 177, 474, 733, 1149, 1161
DpnII GATC 5 cut(s) 175, 472, 731, 1147, 1159
DriI GACNNNNNGTC 1 cut(s) 1138
Eam1105I GACNNNNNGTC 1 cut(s) 1138
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 232
Eco31I GGTCTC 1 cut(s) 1081
Eco47I GGWCC 2 cut(s) 203, 540
Eco57I CTGAAG 2 cut(s) 338, 396
Eco81I CCTNAGG 1 cut(s) 138
Eco88I CYCGRG 2 cut(s) 102, 171
Eco91I GGTNACC 1 cut(s) 644
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 237
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 1 cut(s) 1147
Fnu4HI GCNGC 3 cut(s) 72, 858, 1323
FokI GGATG 2 cut(s) 200, 310
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 72, 858, 1323
FspBI CTAG 3 cut(s) 90, 575, 935
GlaI GCGC 2 cut(s) 112, 905
GluI GCNGC 3 cut(s) 72, 858, 1323
GsuI CTGGAG 1 cut(s) 775
HapII CCGG 3 cut(s) 152, 924, 1414
HgaI GACGC 2 cut(s) 69, 1128
HhaI GCGC 2 cut(s) 113, 906
Hin1I GRCGYC 2 cut(s) 80, 186
Hin6I GCGC 2 cut(s) 111, 904
HinP1I GCGC 2 cut(s) 111, 904
HincII GTYRAC 2 cut(s) 673, 1132
HindII GTYRAC 2 cut(s) 673, 1132
HinfI GANTC 4 cut(s) 242, 560, 1209, 1332
HpaII CCGG 3 cut(s) 152, 924, 1414
HphI GGTGA 5 cut(s) 202, 656, 1120, 1142, 1157
Hpy166II GTNNAC 4 cut(s) 368, 673, 808, 1132
Hpy188I TCNGA 1 cut(s) 1084
Hpy188III TCNNGA 4 cut(s) 104, 152, 173, 809
Hpy8I GTNNAC 4 cut(s) 368, 673, 808, 1132
Hpy99I CGWCG 3 cut(s) 85, 188, 191
HpyAV CCTTC 3 cut(s) 300, 447, 1093
HpyCH4III ACNGT 2 cut(s) 886, 1009
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 7 cut(s) 36, 74, 681, 699, 1061, 1238, 1370
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 26, 77, 86, 857, 1376
HpyF3I CTNAG 3 cut(s) 138, 393, 429
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 2 cut(s) 80, 186
HspAI GCGC 2 cut(s) 111, 904
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 1147
Kzo9I GATC 5 cut(s) 175, 472, 731, 1147, 1159
LmnI GCTCC 1 cut(s) 898
Lsp1109I GCAGC 3 cut(s) 58, 869, 1309
LweI GCATC 3 cut(s) 303, 748, 891
MaeI CTAG 3 cut(s) 90, 575, 935
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 5 cut(s) 388, 644, 962, 1003, 1113
MalI GATC 5 cut(s) 177, 474, 733, 1149, 1161
MboI GATC 5 cut(s) 175, 472, 731, 1147, 1159
MboII GAAGA 4 cut(s) 292, 322, 389, 1192
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 2 cut(s) 175, 472
MhlI GDGCHC 1 cut(s) 232
MlyI GAGTC 2 cut(s) 251, 554
MmeI TCCRAC 1 cut(s) 634
MroI TCCGGA 1 cut(s) 151
MroXI GAANNNNTTC 1 cut(s) 1353
MseI TTAA 3 cut(s) 747, 1046, 1245
MslI CAYNNNNRTG 1 cut(s) 971
MspCI CTTAAG 1 cut(s) 1045
MspI CCGG 3 cut(s) 152, 924, 1414
MspR9I CCNGG 2 cut(s) 582, 924
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 6 cut(s) 17, 26, 77, 86, 857, 1376
NciI CCSGG 1 cut(s) 924
NdeII GATC 5 cut(s) 175, 472, 731, 1147, 1159
NlaIV GGNNCC 2 cut(s) 481, 664
NmuCI GTSAC 3 cut(s) 644, 962, 1113
PdmI GAANNNNTTC 1 cut(s) 1353
PfeI GAWTC 2 cut(s) 1209, 1332
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 225
PinAI ACCGGT 1 cut(s) 1413
PkrI GCNGC 3 cut(s) 73, 859, 1324
PleI GAGTC 2 cut(s) 250, 554
PpsI GAGTC 2 cut(s) 250, 554
Psp6I CCWGG 1 cut(s) 580
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 481, 664
PspPI GGNCC 2 cut(s) 203, 540
PsrI GAACNNNNNNTAC 2 cut(s) 1279, 1311
PstNI CAGNNNCTG 1 cut(s) 1142
PsuI RGATCY 2 cut(s) 175, 472
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 7 cut(s) 40, 49, 95, 367, 569, 769, 818
RsaNI GTAC 7 cut(s) 39, 48, 94, 366, 568, 768, 817
RseI CAYNNNNRTG 1 cut(s) 971
SaqAI TTAA 3 cut(s) 747, 1046, 1245
SatI GCNGC 3 cut(s) 72, 858, 1323
Sau3AI GATC 5 cut(s) 175, 472, 731, 1147, 1159
Sau96I GGNCC 2 cut(s) 203, 540
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 2 cut(s) 251, 554
ScrFI CCNGG 2 cut(s) 582, 924
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 3 cut(s) 303, 748, 891
SinI GGWCC 2 cut(s) 203, 540
SmiMI CAYNNNNRTG 1 cut(s) 971
SmlI CTYRAG 2 cut(s) 231, 1045
SmoI CTYRAG 2 cut(s) 231, 1045
SsiI CCGC 5 cut(s) 411, 513, 596, 631, 855
SspMI CTAG 3 cut(s) 90, 575, 935
StyD4I CCNGG 2 cut(s) 580, 922
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 2 cut(s) 886, 1009
TaiI ACGT 1 cut(s) 189
TaqI TCGA 1 cut(s) 1249
TatI WGTACW 3 cut(s) 38, 47, 365
TfiI GAWTC 2 cut(s) 1209, 1332
Tru1I TTAA 3 cut(s) 747, 1046, 1245
Tru9I TTAA 3 cut(s) 747, 1046, 1245
TscAI CASTG 4 cut(s) 375, 725, 978, 1222
TseFI GTSAC 3 cut(s) 644, 962, 1113
TseI GCWGC 3 cut(s) 71, 857, 1322
Tsp45I GTSAC 3 cut(s) 644, 962, 1113
TspDTI ATGAA 5 cut(s) 293, 929, 1112, 1271, 1389
TspRI CASTG 4 cut(s) 375, 725, 978, 1222
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 225
Vha464I CTTAAG 1 cut(s) 1045
VpaK11BI GGWCC 2 cut(s) 203, 540
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 6 cut(s) 118, 160, 353, 1067, 1191, 1226
XmnI GAANNNNTTC 1 cut(s) 1353
XspI CTAG 3 cut(s) 90, 575, 935
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.