Rh7AG091800

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016006
Physical Location & Seq
Reverse (-)
7016558 .. 7018609
2052 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG091800.1

Sequence Viewer

Length: 606 bp
ATGAGTGAAAAAGGGAATTGCATTGGATATGCTGCAAGGGATCCATCTGGAGTTCTATCTCATTATGAATTTAGCCGCAGGGATCTTGGAACCGATGATGTTTCCATAAGAATTACTCATTGCGGAGTTTGTTATGCTGATGTGATTTGGACCAGAAATAAGCATGGAGACTCCAAGTACCCTCTAGTGCCTGGACACGAGATTGCGGGTATTGTAAAAGAGGTCGGTTCAAATGTTAAGCGGTTCAAAGTCGGTGACCATGTTGGAGTGGGAACCTATGTCAACTCATGCAGAGATTGTGAGTATTGCAATGATGGACTTGAAGTTCAGTGCGTAAAGGGATCAGTTTTCACTTTTAATGGTGTTGATGCTGATGGTACAATTACGAAAGGGGGATACTCCAGTCACATAGTTGTTCACGATAGGTATGAAGCTTTGGTGAAGTCACTTGACTTTATAGTTGACACAGCGTCTGGTGATCACCCATTTGATCCATACATGGCATTGTTAAAGACGGGTGGAATTTTCGTCTTGGTGGGATTCCCCAGTGAAGTCAAATTCAGTCCTGCGAGCCTTAATCTTGGTACTTTGGCATTTTTCAAATGA

Protein Analysis

201

Amino Acids

21.84

Weight (kDa)

6.04

Isoelectric Point (pI)

26.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 31 - 143 1e-23 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 4 cut(s) 76, 123, 206, 241
AclWI GGATC 5 cut(s) 35, 48, 90, 349, 485
AcsI RAATTY 3 cut(s) 68, 522, 557
AfaI GTAC 3 cut(s) 179, 379, 586
AgsI TTSAA 4 cut(s) 231, 247, 323, 601
AhdI GACNNNNNGTC 1 cut(s) 469
AjnI CCWGG 1 cut(s) 190
AloI GAACNNNNNNTCC 2 cut(s) 309, 341
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 162
AlwI GGATC 5 cut(s) 35, 48, 90, 349, 485
AlwNI CAGNNNCTG 1 cut(s) 473
ApeKI GCWGC 1 cut(s) 32
ApoI RAATTY 3 cut(s) 68, 522, 557
AspS9I GGNCC 1 cut(s) 150
AsuHPI GGTGA 4 cut(s) 266, 451, 473, 488
AvaII GGWCC 1 cut(s) 150
BaeI ACNNNNGTAYC 2 cut(s) 388, 421
BamHI GGATCC 1 cut(s) 40
BauI CACGAG 1 cut(s) 197
BbvI GCAGC 1 cut(s) 19
BccI CCATC 3 cut(s) 52, 308, 368
BciT130I CCWGG 1 cut(s) 192
BciVI GTATCC 1 cut(s) 389
BclI TGATCA 1 cut(s) 478
BcoDI GTCTC 1 cut(s) 162
BfaI CTAG 1 cut(s) 185
BfuI GTATCC 1 cut(s) 389
BisI GCNGC 2 cut(s) 33, 76
BlsI GCNGC 2 cut(s) 34, 77
Bme1390I CCNGG 1 cut(s) 192
Bme18I GGWCC 1 cut(s) 150
BmeRI GACNNNNNGTC 1 cut(s) 469
BmgT120I GGNCC 1 cut(s) 150
BmiI GGNNCC 3 cut(s) 42, 91, 274
BmrFI CCNGG 1 cut(s) 192
BmrI ACTGGG 1 cut(s) 540
BmsI GCATC 1 cut(s) 358
BmuI ACTGGG 1 cut(s) 540
BpmI CTGGAG 2 cut(s) 69, 385
Bse1I ACTGG 2 cut(s) 402, 546
Bse3DI GCAATG 2 cut(s) 118, 316
BseBI CCWGG 1 cut(s) 192
BseMI GCAATG 2 cut(s) 118, 316
BseNI ACTGG 2 cut(s) 402, 546
BseXI GCAGC 1 cut(s) 19
BsmAI GTCTC 1 cut(s) 162
Bsp143I GATC 5 cut(s) 40, 82, 341, 478, 490
BspACI CCGC 4 cut(s) 76, 123, 206, 241
BspLI GGNNCC 3 cut(s) 42, 91, 274
BspPI GGATC 5 cut(s) 35, 48, 90, 349, 485
BsrDI GCAATG 2 cut(s) 118, 316
BsrI ACTGG 2 cut(s) 402, 546
BssMI GATC 5 cut(s) 40, 82, 341, 478, 490
BssSI CACGAG 1 cut(s) 197
Bst2BI CACGAG 1 cut(s) 197
Bst2UI CCWGG 1 cut(s) 192
BstC8I GCNNGC 1 cut(s) 571
BstEII GGTNACC 1 cut(s) 254
BstKTI GATC 5 cut(s) 43, 85, 344, 481, 493
BstMAI GTCTC 1 cut(s) 162
BstMBI GATC 5 cut(s) 40, 82, 341, 478, 490
BstNI CCWGG 1 cut(s) 192
BstPI GGTNACC 1 cut(s) 254
BstSCI CCNGG 1 cut(s) 190
BstV1I GCAGC 1 cut(s) 19
BstX2I RGATCY 2 cut(s) 40, 82
BstYI RGATCY 2 cut(s) 40, 82
BsuI GTATCC 1 cut(s) 389
BtsIMutI CAGTG 2 cut(s) 335, 553
Cac8I GCNNGC 1 cut(s) 571
CaiI CAGNNNCTG 1 cut(s) 473
Cfr13I GGNCC 1 cut(s) 150
CseI GACGC 1 cut(s) 459
Csp6I GTAC 3 cut(s) 178, 378, 585
CviAII CATG 4 cut(s) 164, 260, 288, 499
CviJI RGCY 3 cut(s) 75, 434, 573
CviKI_1 RGCY 3 cut(s) 75, 434, 573
CviQI GTAC 3 cut(s) 178, 378, 585
DpnI GATC 5 cut(s) 42, 84, 343, 480, 492
DpnII GATC 5 cut(s) 40, 82, 341, 478, 490
DriI GACNNNNNGTC 1 cut(s) 469
Eam1105I GACNNNNNGTC 1 cut(s) 469
Eco47I GGWCC 1 cut(s) 150
Eco91I GGTNACC 1 cut(s) 254
EcoO65I GGTNACC 1 cut(s) 254
EcoRII CCWGG 1 cut(s) 190
FaeI CATG 4 cut(s) 167, 263, 291, 502
FatI CATG 4 cut(s) 163, 259, 287, 498
FauI CCCGC 1 cut(s) 199
FbaI TGATCA 1 cut(s) 478
Fnu4HI GCNGC 2 cut(s) 33, 76
Fsp4HI GCNGC 2 cut(s) 33, 76
FspBI CTAG 1 cut(s) 185
GluI GCNGC 2 cut(s) 33, 76
GsuI CTGGAG 2 cut(s) 69, 385
HgaI GACGC 1 cut(s) 459
Hin1II CATG 4 cut(s) 167, 263, 291, 502
HincII GTYRAC 2 cut(s) 283, 463
HindII GTYRAC 2 cut(s) 283, 463
HindIII AAGCTT 1 cut(s) 432
HinfI GANTC 2 cut(s) 170, 540
HphI GGTGA 4 cut(s) 266, 451, 473, 488
Hpy166II GTNNAC 3 cut(s) 283, 418, 463
Hpy188III TCNNGA 2 cut(s) 48, 419
Hpy8I GTNNAC 3 cut(s) 283, 418, 463
HpyCH4V TGCA 4 cut(s) 21, 35, 291, 309
Hsp92II CATG 4 cut(s) 167, 263, 291, 502
Ksp22I TGATCA 1 cut(s) 478
Kzo9I GATC 5 cut(s) 40, 82, 341, 478, 490
LpnPI CCDG 9 cut(s) 33, 64, 166, 177, 204, 415, 459, 559, 579
Lsp1109I GCAGC 1 cut(s) 19
LweI GCATC 1 cut(s) 358
MaeI CTAG 1 cut(s) 185
MaeIII GTNAC 3 cut(s) 254, 404, 444
MalI GATC 5 cut(s) 42, 84, 343, 480, 492
MboI GATC 5 cut(s) 40, 82, 341, 478, 490
MflI RGATCY 2 cut(s) 40, 82
MluCI AATT 6 cut(s) 16, 68, 111, 381, 522, 557
MlyI GAGTC 1 cut(s) 164
MmeI TCCRAC 1 cut(s) 244
MnlI CCTC 2 cut(s) 192, 214
MseI TTAA 4 cut(s) 237, 357, 509, 576
MspR9I CCNGG 1 cut(s) 192
MvaI CCWGG 1 cut(s) 192
NdeII GATC 5 cut(s) 40, 82, 341, 478, 490
NlaIII CATG 4 cut(s) 167, 263, 291, 502
NlaIV GGNNCC 3 cut(s) 42, 91, 274
NmuCI GTSAC 3 cut(s) 254, 404, 444
PfeI GAWTC 1 cut(s) 540
PkrI GCNGC 2 cut(s) 34, 77
PleI GAGTC 1 cut(s) 164
PpsI GAGTC 1 cut(s) 164
Psp6I CCWGG 1 cut(s) 190
PspEI GGTNACC 1 cut(s) 254
PspGI CCWGG 1 cut(s) 190
PspN4I GGNNCC 3 cut(s) 42, 91, 274
PspPI GGNCC 1 cut(s) 150
PstNI CAGNNNCTG 1 cut(s) 473
PsuI RGATCY 2 cut(s) 40, 82
RsaI GTAC 3 cut(s) 179, 379, 586
RsaNI GTAC 3 cut(s) 178, 378, 585
SaqAI TTAA 4 cut(s) 237, 357, 509, 576
SatI GCNGC 2 cut(s) 33, 76
Sau3AI GATC 5 cut(s) 40, 82, 341, 478, 490
Sau96I GGNCC 1 cut(s) 150
SchI GAGTC 1 cut(s) 164
ScrFI CCNGG 1 cut(s) 192
SetI ASST 4 cut(s) 225, 278, 428, 436
SfaNI GCATC 1 cut(s) 358
SinI GGWCC 1 cut(s) 150
Sse9I AATT 6 cut(s) 16, 68, 111, 381, 522, 557
SsiI CCGC 4 cut(s) 76, 123, 206, 241
SspMI CTAG 1 cut(s) 185
StyD4I CCNGG 1 cut(s) 190
TasI AATT 6 cut(s) 16, 68, 111, 381, 522, 557
TauI GCSGC 1 cut(s) 78
TfiI GAWTC 1 cut(s) 540
Tru1I TTAA 4 cut(s) 237, 357, 509, 576
Tru9I TTAA 4 cut(s) 237, 357, 509, 576
TscAI CASTG 2 cut(s) 335, 553
TseFI GTSAC 3 cut(s) 254, 404, 444
TseI GCWGC 1 cut(s) 32
Tsp45I GTSAC 3 cut(s) 254, 404, 444
TspDTI ATGAA 2 cut(s) 81, 444
TspRI CASTG 2 cut(s) 335, 553
VpaK11BI GGWCC 1 cut(s) 150
XapI RAATTY 3 cut(s) 68, 522, 557
XspI CTAG 1 cut(s) 185
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.