Rmu_ssc0000422.1_g000016

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000422.1
OG0016006
Physical Location & Seq
Reverse (-)
69404 .. 71820
2417 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000422.1_g000016.1.cds

Sequence Viewer

Length: 816 bp
atgtggtttgctggtcgtgcgattagggcttcttgcagtactaattgtactgggagtggtttgattagagctgcaacggcgtcgtttgcgaggtacttctctcgggaacgcgcagagaatttgaggaaaatcaaccctaaggtcagctttccggaggcgaattcaattgctcgggatctatacgacgtcgtcaagcaacatggacctatcaccatccccaatacttgggctcaagccaaggagtctggtgttagtggattgaatagcaaaacacacatgaagataatgctcaaatggatgagaggaaggaagatgctcaagctgtttcccaaccaagttggctcaaacaaaaaattcttgttatgtacactgcctgaagaccctcatgttactgagtttagaacttccaccgcagtaaaagtgttatctaagaagccttcctccaagaggaaaaagcaaaagcaaaagagggctgaaggatgctctatatttttgtgggagcaaggcaggctaaaagtggttgttagtgaagacgaacagctttatcatgagacgccagctcggccagagccggacgtggccgacgtcggcgatagacaagcagagagagacgaggaggagaggacgcgtggaggtgacgcacgaatgaggtttagtcgaaggacgatttgctctgcttggggttgcttcaatctcggcctgggggcagcgtttgggcgggctgacgccacggagcggccggaagaggtgaggcgacctcgggggagccgagtccgtggacagaggacgccagaggatgccggaggagggagataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

271

Amino Acids

30.5

Weight (kDa)

10.18

Isoelectric Point (pI)

41.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 189, 588
AccB7I CCANNNNNTGG 1 cut(s) 225
AccBSI CCGCTC 1 cut(s) 736
AccII CGCG 2 cut(s) 111, 628
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 3 cut(s) 411, 718, 736
AclWI GGATC 1 cut(s) 183
AcoI YGGCCR 3 cut(s) 563, 579, 737
AcsI RAATTY 3 cut(s) 118, 160, 353
AcuI CTGAAG 2 cut(s) 396, 495
AcyI GRCGYC 6 cut(s) 80, 186, 554, 585, 726, 788
AfaI GTAC 4 cut(s) 40, 49, 95, 367
AfiI CCNNNNNNNGG 4 cut(s) 225, 447, 735, 807
AflIII ACRYGT 1 cut(s) 626
AgsI TTSAA 3 cut(s) 165, 262, 691
AjiI CACGTC 1 cut(s) 577
AjnI CCWGG 1 cut(s) 699
AluBI AGCT 5 cut(s) 71, 147, 322, 541, 560
AluI AGCT 5 cut(s) 71, 147, 322, 541, 560
Alw26I GTCTC 2 cut(s) 545, 603
AlwI GGATC 1 cut(s) 183
Ama87I CYCGRG 3 cut(s) 102, 171, 759
Aor13HI TCCGGA 1 cut(s) 151
AoxI GGCC 4 cut(s) 563, 579, 697, 737
ApeKI GCWGC 2 cut(s) 71, 707
ApoI RAATTY 3 cut(s) 118, 160, 353
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 1 cut(s) 203
AsuHPI GGTGA 3 cut(s) 202, 647, 760
AvaI CYCGRG 3 cut(s) 102, 171, 759
AvaII GGWCC 1 cut(s) 203
AxyI CCTNAGG 1 cut(s) 138
BanII GRGCYC 1 cut(s) 232
BbsI GAAGAC 2 cut(s) 384, 537
BbvI GCAGC 2 cut(s) 58, 719
BccI CCATC 1 cut(s) 221
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 701
BcoDI GTCTC 2 cut(s) 545, 603
BglI GCCNNNNNGGC 1 cut(s) 562
BisI GCNGC 3 cut(s) 72, 708, 737
BlsI GCNGC 3 cut(s) 73, 709, 738
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 701
Bme18I GGWCC 1 cut(s) 203
BmeT110I CYCGRG 3 cut(s) 102, 171, 759
BmgBI CACGTC 1 cut(s) 577
BmgT120I GGNCC 1 cut(s) 203
BmiI GGNNCC 1 cut(s) 767
BmrFI CCNGG 1 cut(s) 701
BmrI ACTGGG 1 cut(s) 60
BmsI GCATC 3 cut(s) 303, 470, 787
BmuI ACTGGG 1 cut(s) 60
BpiI GAAGAC 2 cut(s) 384, 537
BplI GAGNNNNNCTC 2 cut(s) 742, 774
BpuEI CTTGAG 2 cut(s) 216, 302
BsaHI GRCGYC 6 cut(s) 80, 186, 554, 585, 726, 788
BsaJI CCNNGG 5 cut(s) 237, 700, 729, 758, 775
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 4 cut(s) 225, 447, 735, 807
Bse1I ACTGG 1 cut(s) 55
Bse21I CCTNAGG 1 cut(s) 138
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 701
BseDI CCNNGG 5 cut(s) 237, 700, 729, 758, 775
BseGI GGATG 4 cut(s) 213, 303, 485, 802
BseLI CCNNNNNNNGG 4 cut(s) 225, 447, 735, 807
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 1 cut(s) 55
BseRI GAGGAG 2 cut(s) 629, 632
BseX3I CGGCCG 1 cut(s) 737
BseXI GCAGC 2 cut(s) 58, 719
Bsh1236I CGCG 2 cut(s) 111, 628
Bsh1285I CGRYCG 1 cut(s) 740
BshFI GGCC 4 cut(s) 565, 581, 699, 739
BsiEI CGRYCG 1 cut(s) 740
BsiHKCI CYCGRG 3 cut(s) 102, 171, 759
BsiSI CCGG 4 cut(s) 152, 572, 740, 801
BslI CCNNNNNNNGG 4 cut(s) 225, 447, 735, 807
BsmAI GTCTC 2 cut(s) 545, 603
BsmBI CGTCTC 2 cut(s) 545, 603
BsnI GGCC 4 cut(s) 565, 581, 699, 739
BsoBI CYCGRG 3 cut(s) 102, 171, 759
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 1 cut(s) 175
BspACI CCGC 3 cut(s) 411, 718, 736
BspANI GGCC 4 cut(s) 565, 581, 699, 739
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 2 cut(s) 111, 628
BspHI TCATGA 1 cut(s) 547
BspLI GGNNCC 1 cut(s) 767
BspPI GGATC 1 cut(s) 183
BsrBI CCGCTC 1 cut(s) 736
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 1 cut(s) 55
BssECI CCNNGG 5 cut(s) 237, 700, 729, 758, 775
BssMI GATC 1 cut(s) 175
BssNI GRCGYC 6 cut(s) 80, 186, 554, 585, 726, 788
BssT1I CCWWGG 1 cut(s) 237
Bst2UI CCWGG 1 cut(s) 701
Bst6I CTCTTC 1 cut(s) 738
BstACI GRCGYC 6 cut(s) 80, 186, 554, 585, 726, 788
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 509, 558, 720
BstDEI CTNAG 3 cut(s) 138, 393, 429
BstDSI CCRYGG 2 cut(s) 729, 775
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 4 cut(s) 213, 303, 485, 802
BstFNI CGCG 2 cut(s) 111, 628
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 1 cut(s) 178
BstMAI GTCTC 2 cut(s) 545, 603
BstMBI GATC 1 cut(s) 175
BstMCI CGRYCG 1 cut(s) 740
BstMWI GCNNNNNNNGC 6 cut(s) 17, 26, 77, 86, 508, 562
BstNI CCWGG 1 cut(s) 701
BstSCI CCNGG 1 cut(s) 699
BstUI CGCG 2 cut(s) 111, 628
BstV1I GCAGC 2 cut(s) 58, 719
BstV2I GAAGAC 2 cut(s) 384, 537
BstX2I RGATCY 1 cut(s) 175
BstYI RGATCY 1 cut(s) 175
BstZI CGGCCG 1 cut(s) 737
Bsu36I CCTNAGG 1 cut(s) 138
BsuRI GGCC 4 cut(s) 565, 581, 699, 739
BtgI CCRYGG 2 cut(s) 729, 775
BtrI CACGTC 1 cut(s) 577
BtsCI GGATG 4 cut(s) 213, 303, 485, 802
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 1 cut(s) 368
Cac8I GCNNGC 3 cut(s) 509, 558, 720
CciI TCATGA 1 cut(s) 547
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 1 cut(s) 203
CseI GACGC 6 cut(s) 69, 562, 634, 647, 734, 796
Csp6I GTAC 4 cut(s) 39, 48, 94, 366
CviAII CATG 4 cut(s) 200, 277, 386, 548
CviQI GTAC 4 cut(s) 39, 48, 94, 366
DdeI CTNAG 3 cut(s) 138, 393, 429
DpnI GATC 1 cut(s) 177
DpnII GATC 1 cut(s) 175
EaeI YGGCCR 3 cut(s) 563, 579, 737
EagI CGGCCG 1 cut(s) 737
Eam1104I CTCTTC 1 cut(s) 738
EarI CTCTTC 1 cut(s) 738
EclXI CGGCCG 1 cut(s) 737
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 1 cut(s) 203
Eco52I CGGCCG 1 cut(s) 737
Eco57I CTGAAG 2 cut(s) 396, 495
Eco81I CCTNAGG 1 cut(s) 138
Eco88I CYCGRG 3 cut(s) 102, 171, 759
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 699
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 237
Esp3I CGTCTC 2 cut(s) 545, 603
FaeI CATG 4 cut(s) 203, 280, 389, 551
FaiI YATR 7 cut(s) 181, 201, 278, 364, 387, 488, 549
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 4 cut(s) 199, 276, 385, 547
FauI CCCGC 1 cut(s) 711
Fnu4HI GCNGC 3 cut(s) 72, 708, 737
FokI GGATG 4 cut(s) 200, 310, 492, 809
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 3 cut(s) 72, 708, 737
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 72, 708, 737
HaeIII GGCC 4 cut(s) 565, 581, 699, 739
HapII CCGG 4 cut(s) 152, 572, 740, 801
HgaI GACGC 6 cut(s) 69, 562, 634, 647, 734, 796
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 6 cut(s) 80, 186, 554, 585, 726, 788
Hin1II CATG 4 cut(s) 203, 280, 389, 551
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HinfI GANTC 2 cut(s) 242, 771
HpaII CCGG 4 cut(s) 152, 572, 740, 801
HphI GGTGA 3 cut(s) 202, 647, 760
Hpy166II GTNNAC 2 cut(s) 368, 779
Hpy188III TCNNGA 4 cut(s) 104, 152, 173, 548
Hpy8I GTNNAC 2 cut(s) 368, 779
Hpy99I CGWCG 5 cut(s) 85, 188, 191, 587, 590
HpyAV CCTTC 4 cut(s) 300, 447, 470, 654
HpyCH4IV ACGT 3 cut(s) 186, 576, 585
HpyCH4V TGCA 2 cut(s) 36, 74
HpyF10VI GCNNNNNNNGC 6 cut(s) 17, 26, 77, 86, 508, 562
HpyF3I CTNAG 3 cut(s) 138, 393, 429
HpySE526I ACGT 3 cut(s) 186, 576, 585
Hsp92I GRCGYC 6 cut(s) 80, 186, 554, 585, 726, 788
Hsp92II CATG 4 cut(s) 203, 280, 389, 551
HspAI GCGC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 151
Kzo9I GATC 1 cut(s) 175
LmnI GCTCC 3 cut(s) 499, 733, 765
Lsp1109I GCAGC 2 cut(s) 58, 719
LweI GCATC 3 cut(s) 303, 470, 787
MaeII ACGT 3 cut(s) 186, 576, 585
MaeIII GTNAC 2 cut(s) 388, 635
MalI GATC 1 cut(s) 177
MbiI CCGCTC 1 cut(s) 736
MboI GATC 1 cut(s) 175
MboII GAAGA 5 cut(s) 292, 322, 389, 542, 755
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 175
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 5 cut(s) 43, 118, 160, 165, 353
MluI ACGCGT 1 cut(s) 626
MlyI GAGTC 2 cut(s) 251, 780
MroI TCCGGA 1 cut(s) 151
MspI CCGG 4 cut(s) 152, 572, 740, 801
MspR9I CCNGG 1 cut(s) 701
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 701
MvnI CGCG 2 cut(s) 111, 628
MwoI GCNNNNNNNGC 6 cut(s) 17, 26, 77, 86, 508, 562
NdeII GATC 1 cut(s) 175
NlaIII CATG 4 cut(s) 203, 280, 389, 551
NlaIV GGNNCC 1 cut(s) 767
NmeAIII GCCGAG 3 cut(s) 541, 675, 794
NmuCI GTSAC 1 cut(s) 635
PagI TCATGA 1 cut(s) 547
PcsI WCGNNNNNNNCGW 2 cut(s) 582, 766
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 3 cut(s) 73, 709, 738
PleI GAGTC 2 cut(s) 250, 779
PpsI GAGTC 2 cut(s) 250, 779
Psp6I CCWGG 1 cut(s) 699
PspGI CCWGG 1 cut(s) 699
PspN4I GGNNCC 1 cut(s) 767
PspPI GGNCC 1 cut(s) 203
PsuI RGATCY 1 cut(s) 175
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 4 cut(s) 40, 49, 95, 367
RsaNI GTAC 4 cut(s) 39, 48, 94, 366
SatI GCNGC 3 cut(s) 72, 708, 737
Sau3AI GATC 1 cut(s) 175
Sau96I GGNCC 1 cut(s) 203
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 2 cut(s) 251, 780
ScrFI CCNGG 1 cut(s) 701
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 3 cut(s) 303, 470, 787
SinI GGWCC 1 cut(s) 203
SmlI CTYRAG 2 cut(s) 231, 317
SmoI CTYRAG 2 cut(s) 231, 317
Sse9I AATT 5 cut(s) 43, 118, 160, 165, 353
SsiI CCGC 3 cut(s) 411, 718, 736
StyD4I CCNGG 1 cut(s) 699
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 3 cut(s) 189, 579, 588
TaqI TCGA 1 cut(s) 658
TasI AATT 5 cut(s) 43, 118, 160, 165, 353
TatI WGTACW 3 cut(s) 38, 47, 365
TauI GCSGC 1 cut(s) 739
TscAI CASTG 1 cut(s) 375
TseFI GTSAC 1 cut(s) 635
TseI GCWGC 2 cut(s) 71, 707
Tsp45I GTSAC 1 cut(s) 635
TspDTI ATGAA 1 cut(s) 293
TspGWI ACGGA 2 cut(s) 746, 764
TspRI CASTG 1 cut(s) 375
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 1 cut(s) 203
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 3 cut(s) 118, 160, 353
ZraI GACGTC 2 cut(s) 187, 586
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.