Rh7AG091900

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7A
OG0016006
Physical Location & Seq
Reverse (-)
7020738 .. 7029137
8400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7AG091900.1

Sequence Viewer

Length: 1374 bp
ATGTGGTTTGCTGGTCGTGCGATTAGGGCTTCTTGCAGTACTAATTGTACTGGGAGTGGTTTGATTAGAGCTGCAACGGCGTCGTTTGCGAGGTACTTCTCTCGGGAACGCGCAGAGAATTTGAGGAAAATCAACCCTAAGGTCAGCTTTCCGGAGGCGAATTCAATTGCTCGGGATCTATACGACGTCGTCAAGCAACATGGACCTATCACCATCCCCAATACTTGGGCTCAAGCCAAGGAGTCTGGTGTCAGTGGATTGAATAGCAAAACACACATGAAGATAATGCTCAAATGGATGAGAGGAAGGAAGATGCTCAAGCTGTTTCCCAACCAAGTTGGCTCAAACAAAAAATTCTTGTTATGTACACTGCCTGAAGACCCTCATGTTACTGAGTTTAGAACTTCCACCGCAGTAAAAGTGTTATCTAAGAAGCCTTCCTCCAAGAGGAAAAAGCAAAAGCAAAAGAGAGTTCGAGTACTCATACTAGGACAATCGACGACCCACAAACAAAGCCGAGCTCTCTCTCCCCGTATCTTTGGGGATACGTCAACAATGAGTGAAAAAGGGAATTGCATTGGATATGCTGCAAGGGATCCATCTGGAGTTCTATCCCATTATGAATTTAGCCGCAGGGATCTTGGAACCGATGATGTTTCCATAAGAATTACTCATTGCGGAGTTTGTTATGCTGATGTGATTTGGACCAGAAATAAGCATGGAGACTCCAAGTACCCTCTAGTGCCTGGACACGAGATTGCGGGTATTGTAAAAGAGGTAGGTTCAAATGTTAAGCGGTTCAAAGTCGGTGACCATGTTGGAGTGGGAACCTATGTCAACTCATGCAGAGATTGTGAGTATTGCAATGATGGACTTGAAGTTCAGTGCGTAAAGGGATCAGTTTTCACTTTTAATGGTGTTGATGCTGATGGTACAATTACGAAAGGGGGATACTCCAGTCACATAGTTGTTCACGATAGGTATGAAGCTTTGGTGAAGTCACTTGACTTTATAGTTGACACAGCGTCTGGTGATCACCCATTTGATCCATACATGGCATTGTTAAAGACTGGTGGAATTTTCGTCTTGGTGGGATTCCCCAGTGAAATCAAATTCAGTCCTGCAAGCCTTAATCTTGATACAAAAGAAAACACTCAACACTGTAGACGATGGTTAAAAGTTGCACATTCAAATCAAGTCTCCATGAAGCTTGATCTCTTGCAAAAAACAAAGCAACAATGGAAGATTGCAATGATGCGAAAAAGCATATCAGGGTGGTCAGTGACAATGGAGCAGGGCAGACTTTGGAGACCACAGCCTGCGAGCCAAATAAACCATAAGGTCATGTTGAACAAATGGTTTCATTTTATATAG

Protein Analysis

457

Amino Acids

51.29

Weight (kDa)

9.82

Isoelectric Point (pI)

36.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 216 - 328 6.3e-23 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 225
AccI GTMKAC 1 cut(s) 1165
AccII CGCG 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 5 cut(s) 411, 631, 678, 761, 796
AclWI GGATC 6 cut(s) 183, 590, 603, 645, 904, 1040
AcsI RAATTY 6 cut(s) 118, 160, 353, 623, 1077, 1112
AcuI CTGAAG 1 cut(s) 396
AcyI GRCGYC 2 cut(s) 80, 186
AfaI GTAC 7 cut(s) 40, 49, 95, 367, 480, 734, 934
AfiI CCNNNNNNNGG 2 cut(s) 225, 447
AgsI TTSAA 7 cut(s) 165, 262, 786, 802, 878, 1191, 1351
AhdI GACNNNNNGTC 1 cut(s) 1024
AjnI CCWGG 1 cut(s) 745
AloI GAACNNNNNNTCC 2 cut(s) 864, 896
AluBI AGCT 6 cut(s) 71, 147, 322, 521, 989, 1210
AluI AGCT 6 cut(s) 71, 147, 322, 521, 989, 1210
Alw21I GWGCWC 1 cut(s) 523
Alw26I GTCTC 3 cut(s) 717, 1204, 1303
AlwI GGATC 6 cut(s) 183, 590, 603, 645, 904, 1040
AlwNI CAGNNNCTG 1 cut(s) 1028
Ama87I CYCGRG 2 cut(s) 102, 171
Aor13HI TCCGGA 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 71, 587
ApoI RAATTY 6 cut(s) 118, 160, 353, 623, 1077, 1112
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 203, 705
AsuHPI GGTGA 5 cut(s) 202, 821, 1006, 1028, 1043
AvaI CYCGRG 2 cut(s) 102, 171
AvaII GGWCC 2 cut(s) 203, 705
AxyI CCTNAGG 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 943, 976
BamHI GGATCC 1 cut(s) 595
BanII GRGCYC 2 cut(s) 232, 523
BauI CACGAG 1 cut(s) 752
BbsI GAAGAC 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 523
BbvI GCAGC 2 cut(s) 58, 574
BccI CCATC 5 cut(s) 221, 607, 863, 923, 1164
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 747
BciVI GTATCC 2 cut(s) 538, 944
BclI TGATCA 1 cut(s) 1033
BcoDI GTCTC 3 cut(s) 717, 1204, 1303
BfaI CTAG 2 cut(s) 488, 740
BfmI CTRYAG 1 cut(s) 1162
BfuI GTATCC 2 cut(s) 538, 944
BisI GCNGC 3 cut(s) 72, 588, 631
BlsI GCNGC 3 cut(s) 73, 589, 632
BmcAI AGTACT 2 cut(s) 40, 480
Bme1390I CCNGG 1 cut(s) 747
Bme18I GGWCC 2 cut(s) 203, 705
BmeRI GACNNNNNGTC 1 cut(s) 1024
BmeT110I CYCGRG 2 cut(s) 102, 171
BmgT120I GGNCC 2 cut(s) 203, 705
BmiI GGNNCC 3 cut(s) 597, 646, 829
BmrFI CCNGG 1 cut(s) 747
BmrI ACTGGG 2 cut(s) 60, 1095
BmsI GCATC 3 cut(s) 303, 913, 1245
BmuI ACTGGG 2 cut(s) 60, 1095
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 2 cut(s) 624, 940
BpuEI CTTGAG 2 cut(s) 216, 302
BsaHI GRCGYC 2 cut(s) 80, 186
BsaI GGTCTC 1 cut(s) 1303
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 447
Bse1I ACTGG 4 cut(s) 55, 957, 1075, 1101
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 3 cut(s) 673, 871, 1257
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 747
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 213, 303
BseLI CCNNNNNNNGG 2 cut(s) 225, 447
BseMI GCAATG 3 cut(s) 673, 871, 1257
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 55, 957, 1075, 1101
BseXI GCAGC 2 cut(s) 58, 574
Bsh1236I CGCG 1 cut(s) 111
BsiHKAI GWGCWC 1 cut(s) 523
BsiHKCI CYCGRG 2 cut(s) 102, 171
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 225, 447
BsmAI GTCTC 3 cut(s) 717, 1204, 1303
Bso31I GGTCTC 1 cut(s) 1303
BsoBI CYCGRG 2 cut(s) 102, 171
Bsp1286I GDGCHC 2 cut(s) 232, 523
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
BspACI CCGC 5 cut(s) 411, 631, 678, 761, 796
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 3 cut(s) 597, 646, 829
BspPI GGATC 6 cut(s) 183, 590, 603, 645, 904, 1040
BspTNI GGTCTC 1 cut(s) 1303
BsrDI GCAATG 3 cut(s) 673, 871, 1257
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 4 cut(s) 55, 957, 1075, 1101
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
BssNI GRCGYC 2 cut(s) 80, 186
BssSI CACGAG 1 cut(s) 752
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 752
Bst2UI CCWGG 1 cut(s) 747
Bst4CI ACNGT 1 cut(s) 1163
BstACI GRCGYC 2 cut(s) 80, 186
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 3 cut(s) 1126, 1320, 1324
BstDEI CTNAG 3 cut(s) 138, 393, 429
BstEII GGTNACC 1 cut(s) 809
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 2 cut(s) 213, 303
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 7 cut(s) 178, 598, 640, 899, 1036, 1048, 1216
BstMAI GTCTC 3 cut(s) 717, 1204, 1303
BstMBI GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
BstMWI GCNNNNNNNGC 4 cut(s) 17, 26, 77, 86
BstNI CCWGG 1 cut(s) 747
BstPI GGTNACC 1 cut(s) 809
BstSCI CCNGG 1 cut(s) 745
BstSFI CTRYAG 1 cut(s) 1162
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 2 cut(s) 58, 574
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 3 cut(s) 175, 595, 637
BstYI RGATCY 3 cut(s) 175, 595, 637
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 2 cut(s) 538, 944
BtsCI GGATG 2 cut(s) 213, 303
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 6 cut(s) 259, 368, 890, 1108, 1159, 1287
Cac8I GCNNGC 3 cut(s) 1126, 1320, 1324
CaiI CAGNNNCTG 1 cut(s) 1028
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 203, 705
CseI GACGC 2 cut(s) 69, 1014
Csp6I GTAC 7 cut(s) 39, 48, 94, 366, 479, 733, 933
CviAII CATG 9 cut(s) 200, 277, 386, 719, 815, 843, 1054, 1204, 1345
CviQI GTAC 7 cut(s) 39, 48, 94, 366, 479, 733, 933
DdeI CTNAG 3 cut(s) 138, 393, 429
DpnI GATC 7 cut(s) 177, 597, 639, 898, 1035, 1047, 1215
DpnII GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
DriI GACNNNNNGTC 1 cut(s) 1024
Eam1105I GACNNNNNGTC 1 cut(s) 1024
Ecl136II GAGCTC 1 cut(s) 521
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 2 cut(s) 232, 523
Eco31I GGTCTC 1 cut(s) 1303
Eco47I GGWCC 2 cut(s) 203, 705
Eco53kI GAGCTC 1 cut(s) 521
Eco57I CTGAAG 1 cut(s) 396
Eco81I CCTNAGG 1 cut(s) 138
Eco88I CYCGRG 2 cut(s) 102, 171
Eco91I GGTNACC 1 cut(s) 809
EcoICRI GAGCTC 1 cut(s) 521
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 809
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 745
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 2 cut(s) 232, 523
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 9 cut(s) 203, 280, 389, 722, 818, 846, 1057, 1207, 1348
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 9 cut(s) 199, 276, 385, 718, 814, 842, 1053, 1203, 1344
FauI CCCGC 1 cut(s) 754
FbaI TGATCA 1 cut(s) 1033
FblI GTMKAC 1 cut(s) 1165
Fnu4HI GCNGC 3 cut(s) 72, 588, 631
FokI GGATG 2 cut(s) 200, 310
FriOI GRGCYC 2 cut(s) 232, 523
Fsp4HI GCNGC 3 cut(s) 72, 588, 631
FspBI CTAG 2 cut(s) 488, 740
GlaI GCGC 1 cut(s) 112
GluI GCNGC 3 cut(s) 72, 588, 631
GsuI CTGGAG 2 cut(s) 624, 940
HapII CCGG 1 cut(s) 152
HgaI GACGC 2 cut(s) 69, 1014
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 2 cut(s) 80, 186
Hin1II CATG 9 cut(s) 203, 280, 389, 722, 818, 846, 1057, 1207, 1348
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 3 cut(s) 552, 838, 1018
HindII GTYRAC 3 cut(s) 552, 838, 1018
HindIII AAGCTT 2 cut(s) 987, 1208
HinfI GANTC 3 cut(s) 242, 725, 1095
HpaII CCGG 1 cut(s) 152
HphI GGTGA 5 cut(s) 202, 821, 1006, 1028, 1043
Hpy166II GTNNAC 6 cut(s) 368, 552, 838, 973, 1018, 1166
Hpy188III TCNNGA 6 cut(s) 104, 152, 173, 603, 974, 1136
Hpy8I GTNNAC 6 cut(s) 368, 552, 838, 973, 1018, 1166
Hpy99I CGWCG 4 cut(s) 85, 188, 191, 502
HpyAV CCTTC 2 cut(s) 300, 447
HpyCH4III ACNGT 1 cut(s) 1163
HpyCH4IV ACGT 2 cut(s) 186, 548
HpyF10VI GCNNNNNNNGC 4 cut(s) 17, 26, 77, 86
HpyF3I CTNAG 3 cut(s) 138, 393, 429
HpySE526I ACGT 2 cut(s) 186, 548
Hsp92I GRCGYC 2 cut(s) 80, 186
Hsp92II CATG 9 cut(s) 203, 280, 389, 722, 818, 846, 1057, 1207, 1348
HspAI GCGC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 1033
Kzo9I GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
LmnI GCTCC 1 cut(s) 1291
Lsp1109I GCAGC 2 cut(s) 58, 574
LweI GCATC 3 cut(s) 303, 913, 1245
MaeI CTAG 2 cut(s) 488, 740
MaeII ACGT 2 cut(s) 186, 548
MaeIII GTNAC 5 cut(s) 388, 809, 959, 999, 1282
MalI GATC 7 cut(s) 177, 597, 639, 898, 1035, 1047, 1215
MboI GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
MboII GAAGA 4 cut(s) 292, 322, 389, 1255
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 3 cut(s) 175, 595, 637
MhlI GDGCHC 2 cut(s) 232, 523
MlyI GAGTC 2 cut(s) 251, 719
MmeI TCCRAC 1 cut(s) 799
MnlI CCTC 9 cut(s) 84, 117, 148, 296, 393, 441, 451, 747, 769
MroI TCCGGA 1 cut(s) 151
MseI TTAA 5 cut(s) 792, 912, 1064, 1131, 1175
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 747
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 747
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 4 cut(s) 17, 26, 77, 86
NdeII GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
NlaIII CATG 9 cut(s) 203, 280, 389, 722, 818, 846, 1057, 1207, 1348
NlaIV GGNNCC 3 cut(s) 597, 646, 829
NmeAIII GCCGAG 1 cut(s) 542
NmuCI GTSAC 4 cut(s) 809, 959, 999, 1282
PfeI GAWTC 1 cut(s) 1095
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 3 cut(s) 73, 589, 632
PleI GAGTC 2 cut(s) 250, 719
PpsI GAGTC 2 cut(s) 250, 719
Psp124BI GAGCTC 1 cut(s) 523
Psp6I CCWGG 1 cut(s) 745
PspEI GGTNACC 1 cut(s) 809
PspGI CCWGG 1 cut(s) 745
PspN4I GGNNCC 3 cut(s) 597, 646, 829
PspPI GGNCC 2 cut(s) 203, 705
PstNI CAGNNNCTG 1 cut(s) 1028
PsuI RGATCY 3 cut(s) 175, 595, 637
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 7 cut(s) 40, 49, 95, 367, 480, 734, 934
RsaNI GTAC 7 cut(s) 39, 48, 94, 366, 479, 733, 933
SacI GAGCTC 1 cut(s) 523
SaqAI TTAA 5 cut(s) 792, 912, 1064, 1131, 1175
SatI GCNGC 3 cut(s) 72, 588, 631
Sau3AI GATC 7 cut(s) 175, 595, 637, 896, 1033, 1045, 1213
Sau96I GGNCC 2 cut(s) 203, 705
ScaI AGTACT 2 cut(s) 40, 480
SchI GAGTC 2 cut(s) 251, 719
ScrFI CCNGG 1 cut(s) 747
SduI GDGCHC 2 cut(s) 232, 523
SfaNI GCATC 3 cut(s) 303, 913, 1245
SfcI CTRYAG 1 cut(s) 1162
SinI GGWCC 2 cut(s) 203, 705
SmlI CTYRAG 2 cut(s) 231, 317
SmoI CTYRAG 2 cut(s) 231, 317
SsiI CCGC 5 cut(s) 411, 631, 678, 761, 796
SspMI CTAG 2 cut(s) 488, 740
SstI GAGCTC 1 cut(s) 523
StyD4I CCNGG 1 cut(s) 745
StyI CCWWGG 1 cut(s) 237
TaaI ACNGT 1 cut(s) 1163
TaiI ACGT 2 cut(s) 189, 551
TaqI TCGA 2 cut(s) 475, 497
TatI WGTACW 4 cut(s) 38, 47, 365, 478
TauI GCSGC 1 cut(s) 633
TfiI GAWTC 1 cut(s) 1095
Tru1I TTAA 5 cut(s) 792, 912, 1064, 1131, 1175
Tru9I TTAA 5 cut(s) 792, 912, 1064, 1131, 1175
TscAI CASTG 6 cut(s) 259, 375, 890, 1108, 1166, 1287
TseFI GTSAC 4 cut(s) 809, 959, 999, 1282
TseI GCWGC 2 cut(s) 71, 587
Tsp45I GTSAC 4 cut(s) 809, 959, 999, 1282
TspDTI ATGAA 5 cut(s) 293, 636, 999, 1220, 1352
TspRI CASTG 6 cut(s) 259, 375, 890, 1108, 1166, 1287
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 203, 705
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 6 cut(s) 118, 160, 353, 623, 1077, 1112
XmiI GTMKAC 1 cut(s) 1165
XspI CTAG 2 cut(s) 488, 740
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 2 cut(s) 40, 480
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.