MD06G1126400.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0016006
Physical Location & Seq
Forward (+)
26844044 .. 26846433
2390 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1126400.v1.1.491

Sequence Viewer

Length: 456 bp
ATGTGGTTCGCCGGCGGCGCGTTTAGGGCTTCCACTTCGACCGGAAGTGGTCTGATTACAACCGCCGCGGCGTTTGTAAGGCATTTCTCCCGGAGCCGCGCGGAGAATCTGAGGAAAATCAATCCAAAAGTGAGCTTCCCTGAGGCTAATTCTATCGCTCGTGATCTATACGATGTCGTCAAACAGCATGGACCTCTCACCATCCCCAATACTTGGGTTCAGGCTAAGGAATTTGGTGTCAATGGATTGATGAGCAAAACACACATGAAGATAATGCTCAAATGGATGAGGGGAAGGAAGATGCTGAAGTTGTTCCCCAACCAAGTTGGTTCGACCAAAAAATTCTTGTTATGCACACTGCCTGAAGATGCTGAAGTTACTCAATTTAGAGAATCATCAGCAGTAAGGCTGCAACATAGGAAGCCTTCCATCAAGCGGAAGAAGCAAAAGAAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.16

Weight (kDa)

11.1

Isoelectric Point (pI)

33.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 213
AccII CGCG 4 cut(s) 20, 68, 99, 101
AciI CCGC 7 cut(s) 15, 63, 66, 68, 97, 101, 436
AcsI RAATTY 2 cut(s) 230, 341
AcuI CTGAAG 3 cut(s) 326, 384, 393
AfiI CCNNNNNNNGG 2 cut(s) 213, 435
AluBI AGCT 1 cut(s) 135
AluI AGCT 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 409
ApoI RAATTY 2 cut(s) 230, 341
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 2 cut(s) 20, 101
AspS9I GGNCC 1 cut(s) 191
AsuC2I CCSGG 1 cut(s) 91
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 191
AxyI CCTNAGG 1 cut(s) 141
BauI CACGAG 1 cut(s) 159
BbvI GCAGC 1 cut(s) 396
BccI CCATC 2 cut(s) 209, 437
BcnI CCSGG 1 cut(s) 91
BisI GCNGC 5 cut(s) 16, 66, 69, 97, 410
BlsI GCNGC 5 cut(s) 17, 67, 70, 98, 411
Bme1390I CCNGG 1 cut(s) 91
Bme18I GGWCC 1 cut(s) 191
BmgT120I GGNCC 1 cut(s) 191
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 1 cut(s) 91
BmsI GCATC 2 cut(s) 291, 358
Bpu10I CCTNAGC 1 cut(s) 225
BpuMI CCSGG 1 cut(s) 91
BsaJI CCNNGG 1 cut(s) 66
BsaWI WCCGGW 1 cut(s) 41
Bsc4I CCNNNNNNNGG 2 cut(s) 213, 435
Bse118I RCCGGY 1 cut(s) 11
Bse21I CCTNAGG 1 cut(s) 141
BseDI CCNNGG 1 cut(s) 66
BseGI GGATG 2 cut(s) 201, 291
BseLI CCNNNNNNNGG 2 cut(s) 213, 435
BseMII CTCAG 2 cut(s) 101, 132
BseXI GCAGC 1 cut(s) 396
Bsh1236I CGCG 4 cut(s) 20, 68, 99, 101
Bsh1285I CGRYCG 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 42
BsiSI CCGG 3 cut(s) 12, 42, 91
BslI CCNNNNNNNGG 2 cut(s) 213, 435
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 7 cut(s) 15, 63, 66, 68, 97, 101, 436
BspCNI CTCAG 2 cut(s) 102, 133
BspFNI CGCG 4 cut(s) 20, 68, 99, 101
BspLI GGNNCC 1 cut(s) 95
BsrFI RCCGGY 1 cut(s) 11
BssAI RCCGGY 1 cut(s) 11
BssECI CCNNGG 1 cut(s) 66
BssMI GATC 1 cut(s) 163
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstC8I GCNNGC 1 cut(s) 13
BstDEI CTNAG 3 cut(s) 110, 141, 225
BstDSI CCRYGG 1 cut(s) 66
BstF5I GGATG 2 cut(s) 201, 291
BstFNI CGCG 4 cut(s) 20, 68, 99, 101
BstHHI GCGC 2 cut(s) 20, 101
BstKTI GATC 1 cut(s) 166
BstMBI GATC 1 cut(s) 163
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 3 cut(s) 17, 26, 442
BstSCI CCNGG 1 cut(s) 89
BstUI CGCG 4 cut(s) 20, 68, 99, 101
BstV1I GCAGC 1 cut(s) 396
Bsu36I CCTNAGG 1 cut(s) 141
BtgI CCRYGG 1 cut(s) 66
BtsCI GGATG 2 cut(s) 201, 291
BtsI GCAGTG 1 cut(s) 356
BtsIMutI CAGTG 1 cut(s) 356
Cac8I GCNNGC 1 cut(s) 13
CfoI GCGC 2 cut(s) 20, 101
Cfr10I RCCGGY 1 cut(s) 11
Cfr13I GGNCC 1 cut(s) 191
Cfr42I CCGCGG 1 cut(s) 69
CviAII CATG 2 cut(s) 188, 265
CviJI RGCY 7 cut(s) 29, 96, 135, 146, 224, 409, 424
CviKI_1 RGCY 7 cut(s) 29, 96, 135, 146, 224, 409, 424
DdeI CTNAG 3 cut(s) 110, 141, 225
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco47I GGWCC 1 cut(s) 191
Eco57I CTGAAG 3 cut(s) 326, 384, 393
Eco81I CCTNAGG 1 cut(s) 141
FaeI CATG 2 cut(s) 191, 268
FaiI YATR 5 cut(s) 169, 189, 266, 352, 417
FatI CATG 2 cut(s) 187, 264
Fnu4HI GCNGC 5 cut(s) 16, 66, 69, 97, 410
FokI GGATG 2 cut(s) 188, 298
Fsp4HI GCNGC 5 cut(s) 16, 66, 69, 97, 410
GlaI GCGC 2 cut(s) 19, 100
GluI GCNGC 5 cut(s) 16, 66, 69, 97, 410
HapII CCGG 3 cut(s) 12, 42, 91
HhaI GCGC 2 cut(s) 20, 101
Hin1II CATG 2 cut(s) 191, 268
Hin6I GCGC 2 cut(s) 18, 99
HinP1I GCGC 2 cut(s) 18, 99
HinfI GANTC 2 cut(s) 106, 392
HpaII CCGG 3 cut(s) 12, 42, 91
HphI GGTGA 1 cut(s) 190
Hpy188I TCNGA 2 cut(s) 54, 111
Hpy188III TCNNGA 1 cut(s) 161
HpyAV CCTTC 2 cut(s) 288, 435
HpyCH4V TGCA 2 cut(s) 354, 412
HpyF10VI GCNNNNNNNGC 3 cut(s) 17, 26, 442
HpyF3I CTNAG 3 cut(s) 110, 141, 225
Hsp92II CATG 2 cut(s) 191, 268
HspAI GCGC 2 cut(s) 18, 99
KroI GCCGGC 1 cut(s) 11
KroNI GCCGGC 1 cut(s) 13
KspI CCGCGG 1 cut(s) 69
Kzo9I GATC 1 cut(s) 163
LmnI GCTCC 1 cut(s) 93
LpnPI CCDG 6 cut(s) 25, 55, 104, 153, 206, 375
Lsp1109I GCAGC 1 cut(s) 396
LweI GCATC 2 cut(s) 291, 358
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 4 cut(s) 280, 310, 377, 451
MluCI AATT 4 cut(s) 148, 230, 341, 383
MnlI CCTC 4 cut(s) 105, 136, 204, 282
MreI CGCCGGCG 1 cut(s) 11
MroNI GCCGGC 1 cut(s) 11
MroXI GAANNNNTTC 1 cut(s) 311
MspA1I CMGCKG 1 cut(s) 68
MspI CCGG 3 cut(s) 12, 42, 91
MspR9I CCNGG 1 cut(s) 91
MvnI CGCG 4 cut(s) 20, 68, 99, 101
MwoI GCNNNNNNNGC 3 cut(s) 17, 26, 442
NaeI GCCGGC 1 cut(s) 13
NciI CCSGG 1 cut(s) 91
NdeII GATC 1 cut(s) 163
NgoMIV GCCGGC 1 cut(s) 11
NlaIII CATG 2 cut(s) 191, 268
NlaIV GGNNCC 1 cut(s) 95
PdiI GCCGGC 1 cut(s) 13
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 2 cut(s) 106, 392
PflMI CCANNNNNTGG 1 cut(s) 213
PfoI TCCNGGA 1 cut(s) 89
PkrI GCNGC 5 cut(s) 17, 67, 70, 98, 411
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 1 cut(s) 191
SacII CCGCGG 1 cut(s) 69
SatI GCNGC 5 cut(s) 16, 66, 69, 97, 410
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 1 cut(s) 191
ScrFI CCNGG 1 cut(s) 91
SetI ASST 2 cut(s) 137, 196
SfaNI GCATC 2 cut(s) 291, 358
Sfr303I CCGCGG 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 11
SgrBI CCGCGG 1 cut(s) 69
SinI GGWCC 1 cut(s) 191
Sse9I AATT 4 cut(s) 148, 230, 341, 383
SsiI CCGC 7 cut(s) 15, 63, 66, 68, 97, 101, 436
StyD4I CCNGG 1 cut(s) 89
TaqI TCGA 2 cut(s) 38, 332
TasI AATT 4 cut(s) 148, 230, 341, 383
TauI GCSGC 4 cut(s) 18, 68, 71, 99
TfiI GAWTC 2 cut(s) 106, 392
TscAI CASTG 1 cut(s) 363
TseI GCWGC 1 cut(s) 409
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 1 cut(s) 363
Van91I CCANNNNNTGG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 191
XapI RAATTY 2 cut(s) 230, 341
XmnI GAANNNNTTC 1 cut(s) 311
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.