Prupe.5G136900_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp05
OG0016006
Physical Location & Seq
Reverse (-)
12931978 .. 12934167
2190 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.5G136900.1

Sequence Viewer

Length: 456 bp
ATGTGGTTTGGCGGTGGCGCGTTTAGGGCTTCCACTTCGACTGGAAGCGGTTTGATTACAAGCGCCACTGCGTTTGTGAGGCATTTCTCTCGGAAGCGCGCAGAGAATTTGAGGAAAATCAACCCCAAAGTGAGCTTTCCGGAGGCTAACTCCATTGCTCGTGATCTATACGACGTCGTCAAGCAACATGGCCCTCTCACCATCTCCAATACTTGGGTTCAGGCTAAGGATTCTGGTCTCAGTGGATTGAACAGCAAAACACACATGAAGATAATGCTAAAATGGATGAGGGGAAGGAAGATGCTGAAGCTGTTCCCCAACCAAGTTGGTTCCACCAAAAAATTCTTGTTATGTTCACTGCCTGAAGACCCAGAAGTTACTGAATTTAGAACTTCCTCAGCAGTGAAGGTCCAAAATAGGAAGCCTTCTGTGAAGCGCAAAAAGCAAAAGAAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

152

Amino Acids

17.0

Weight (kDa)

10.97

Isoelectric Point (pI)

28.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 177
AccB7I CCANNNNNTGG 1 cut(s) 213
AccII CGCG 2 cut(s) 20, 99
AccIII TCCGGA 1 cut(s) 139
AciI CCGC 2 cut(s) 12, 48
AcsI RAATTY 3 cut(s) 106, 341, 383
AcuI CTGAAG 2 cut(s) 326, 384
AcyI GRCGYC 1 cut(s) 174
AfiI CCNNNNNNNGG 1 cut(s) 213
AgsI TTSAA 1 cut(s) 250
AluBI AGCT 2 cut(s) 135, 310
AluI AGCT 2 cut(s) 135, 310
Alw26I GTCTC 1 cut(s) 242
Aor13HI TCCGGA 1 cut(s) 139
AoxI GGCC 1 cut(s) 190
ApoI RAATTY 3 cut(s) 106, 341, 383
Asp700I GAANNNNTTC 1 cut(s) 311
AspLEI GCGC 5 cut(s) 20, 65, 99, 101, 438
AspS9I GGNCC 2 cut(s) 191, 409
AsuHPI GGTGA 1 cut(s) 190
AvaII GGWCC 1 cut(s) 409
BauI CACGAG 1 cut(s) 159
BbsI GAAGAC 1 cut(s) 372
BbvCI CCTCAGC 1 cut(s) 397
BccI CCATC 1 cut(s) 209
BcgI CGANNNNNNTGC 2 cut(s) 71, 105
BcoDI GTCTC 1 cut(s) 242
BfoI RGCGCY 1 cut(s) 66
Bme18I GGWCC 1 cut(s) 409
BmgT120I GGNCC 2 cut(s) 191, 409
BmiI GGNNCC 1 cut(s) 331
BmsI GCATC 1 cut(s) 291
BpiI GAAGAC 1 cut(s) 372
BplI GAGNNNNNCTC 2 cut(s) 134, 166
Bpu10I CCTNAGC 2 cut(s) 225, 397
BsaHI GRCGYC 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 242
BsaWI WCCGGW 1 cut(s) 139
Bsc4I CCNNNNNNNGG 1 cut(s) 213
Bse1I ACTGG 1 cut(s) 46
Bse3DI GCAATG 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 139
BseGI GGATG 1 cut(s) 291
BseLI CCNNNNNNNGG 1 cut(s) 213
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 2 cut(s) 253, 411
BseNI ACTGG 1 cut(s) 46
BsePI GCGCGC 1 cut(s) 97
Bsh1236I CGCG 2 cut(s) 20, 99
BshFI GGCC 1 cut(s) 192
BsiSI CCGG 1 cut(s) 140
BslI CCNNNNNNNGG 1 cut(s) 213
BsmAI GTCTC 1 cut(s) 242
BsnI GGCC 1 cut(s) 192
Bso31I GGTCTC 1 cut(s) 242
Bsp13I TCCGGA 1 cut(s) 139
Bsp143I GATC 1 cut(s) 163
BspACI CCGC 2 cut(s) 12, 48
BspANI GGCC 1 cut(s) 192
BspCNI CTCAG 2 cut(s) 252, 410
BspEI TCCGGA 1 cut(s) 139
BspFNI CGCG 2 cut(s) 20, 99
BspLI GGNNCC 1 cut(s) 331
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 153
BsrI ACTGG 1 cut(s) 46
BssHII GCGCGC 1 cut(s) 97
BssMI GATC 1 cut(s) 163
BssNI GRCGYC 1 cut(s) 174
BssSI CACGAG 1 cut(s) 159
Bst2BI CACGAG 1 cut(s) 159
BstACI GRCGYC 1 cut(s) 174
BstC8I GCNNGC 1 cut(s) 99
BstDEI CTNAG 3 cut(s) 225, 239, 397
BstF5I GGATG 1 cut(s) 291
BstFNI CGCG 2 cut(s) 20, 99
BstH2I RGCGCY 1 cut(s) 66
BstHHI GCGC 5 cut(s) 20, 65, 99, 101, 438
BstKTI GATC 1 cut(s) 166
BstMAI GTCTC 1 cut(s) 242
BstMBI GATC 1 cut(s) 163
BstMWI GCNNNNNNNGC 2 cut(s) 26, 442
BstUI CGCG 2 cut(s) 20, 99
BstV2I GAAGAC 1 cut(s) 372
BsuRI GGCC 1 cut(s) 192
BtsCI GGATG 1 cut(s) 291
BtsI GCAGTG 3 cut(s) 66, 356, 408
BtsIMutI CAGTG 4 cut(s) 66, 247, 356, 408
Cac8I GCNNGC 1 cut(s) 99
CfoI GCGC 5 cut(s) 20, 65, 99, 101, 438
Cfr13I GGNCC 2 cut(s) 191, 409
CspCI CAANNNNNGTGG 2 cut(s) 55, 90
CviAII CATG 2 cut(s) 188, 265
CviJI RGCY 7 cut(s) 29, 135, 146, 192, 224, 310, 424
CviKI_1 RGCY 7 cut(s) 29, 135, 146, 192, 224, 310, 424
DdeI CTNAG 3 cut(s) 225, 239, 397
DpnI GATC 1 cut(s) 165
DpnII GATC 1 cut(s) 163
Eco31I GGTCTC 1 cut(s) 242
Eco47I GGWCC 1 cut(s) 409
Eco57I CTGAAG 2 cut(s) 326, 384
FaeI CATG 2 cut(s) 191, 268
FaiI YATR 4 cut(s) 169, 189, 266, 352
FatI CATG 2 cut(s) 187, 264
FokI GGATG 1 cut(s) 298
GlaI GCGC 5 cut(s) 19, 64, 98, 100, 437
HaeII RGCGCY 1 cut(s) 66
HaeIII GGCC 1 cut(s) 192
HapII CCGG 1 cut(s) 140
HhaI GCGC 5 cut(s) 20, 65, 99, 101, 438
Hin1I GRCGYC 1 cut(s) 174
Hin1II CATG 2 cut(s) 191, 268
Hin6I GCGC 5 cut(s) 18, 63, 97, 99, 436
HinP1I GCGC 5 cut(s) 18, 63, 97, 99, 436
HinfI GANTC 1 cut(s) 230
HpaII CCGG 1 cut(s) 140
HphI GGTGA 1 cut(s) 190
Hpy166II GTNNAC 1 cut(s) 356
Hpy188I TCNGA 1 cut(s) 93
Hpy188III TCNNGA 2 cut(s) 140, 161
Hpy8I GTNNAC 1 cut(s) 356
Hpy99I CGWCG 2 cut(s) 176, 179
HpyAV CCTTC 3 cut(s) 288, 400, 435
HpyCH4IV ACGT 1 cut(s) 174
HpyF10VI GCNNNNNNNGC 2 cut(s) 26, 442
HpyF3I CTNAG 3 cut(s) 225, 239, 397
HpySE526I ACGT 1 cut(s) 174
Hsp92I GRCGYC 1 cut(s) 174
Hsp92II CATG 2 cut(s) 191, 268
HspAI GCGC 5 cut(s) 18, 63, 97, 99, 436
Kpn2I TCCGGA 1 cut(s) 139
Kzo9I GATC 1 cut(s) 163
LpnPI CCDG 6 cut(s) 27, 153, 206, 219, 375, 384
LweI GCATC 1 cut(s) 291
MaeII ACGT 1 cut(s) 174
MaeIII GTNAC 1 cut(s) 376
MalI GATC 1 cut(s) 165
MboI GATC 1 cut(s) 163
MboII GAAGA 3 cut(s) 280, 310, 377
MluCI AATT 3 cut(s) 106, 341, 383
MnlI CCTC 6 cut(s) 72, 105, 136, 204, 282, 406
MroI TCCGGA 1 cut(s) 139
MroXI GAANNNNTTC 1 cut(s) 311
MspI CCGG 1 cut(s) 140
MvnI CGCG 2 cut(s) 20, 99
MwoI GCNNNNNNNGC 2 cut(s) 26, 442
NdeII GATC 1 cut(s) 163
NlaIII CATG 2 cut(s) 191, 268
NlaIV GGNNCC 1 cut(s) 331
PauI GCGCGC 1 cut(s) 97
PdmI GAANNNNTTC 1 cut(s) 311
PfeI GAWTC 1 cut(s) 230
PflFI GACNNNGTC 1 cut(s) 176
PflMI CCANNNNNTGG 1 cut(s) 213
PspN4I GGNNCC 1 cut(s) 331
PspPI GGNCC 2 cut(s) 191, 409
PsyI GACNNNGTC 1 cut(s) 176
PteI GCGCGC 1 cut(s) 97
Sau3AI GATC 1 cut(s) 163
Sau96I GGNCC 2 cut(s) 191, 409
SetI ASST 4 cut(s) 137, 177, 312, 411
SfaNI GCATC 1 cut(s) 291
SinI GGWCC 1 cut(s) 409
Sse9I AATT 3 cut(s) 106, 341, 383
SsiI CCGC 2 cut(s) 12, 48
TaiI ACGT 1 cut(s) 177
TaqI TCGA 1 cut(s) 38
TasI AATT 3 cut(s) 106, 341, 383
TfiI GAWTC 1 cut(s) 230
TscAI CASTG 4 cut(s) 73, 247, 363, 408
TspDTI ATGAA 1 cut(s) 281
TspRI CASTG 4 cut(s) 73, 247, 363, 408
Tth111I GACNNNGTC 1 cut(s) 176
Van91I CCANNNNNTGG 1 cut(s) 213
VpaK11BI GGWCC 1 cut(s) 409
XapI RAATTY 3 cut(s) 106, 341, 383
XmnI GAANNNNTTC 1 cut(s) 311
ZraI GACGTC 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.