Rorug06G0487600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0016006
Physical Location & Seq
Forward (+)
60635383 .. 60638101
2719 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0487600.1

Sequence Viewer

Length: 1224 bp
ATGTCATGGCTCGCCCACTCGCTCTCTAAATCCCTCCGTATCGACGGCGACGGCGAAGGCCAAGATCACGACGACGACGTCGTACCCCACCGCAACACCAACCATGAAGCTGACGTCCCGCCCACCGCCTCCACCAAACCCCAAGACAAAGACAACAACGAAATCCAATCGGATGCAGAAGCAGTTGAAGACGCCCAAACGCGTGGCGTGAAAGAAGACCTATCGGAATTCCAGCAAACCCTAACGCGCCAATTCTGGGGCGTCGCCTCGTTCCTTGCGCCACCACCGCCCTCTGATCGATTAGCTTCTCCGCCCGATTGCGATCGATCCGAGCCGGCCGATCACCCACCCGGTCAATCGCCGATGGCGTTCAATGAAGAGGAGGAGGAGGAGTGCGCCGTCGGTGTCACTGACGAGGTCTTGGCCTTCGCTAGAAACATCGCGATGCATCCAGAGACCTGGTTGGACTTTCCTCTTGATGAAGAAGAAGACTTGGGAGATTTTGAAATGTCTGATGCCCAGCAAGAGCATGCTATGATGATTGAACATCTTGCGCCGAGATTAGCTGCTTTGAGAATCGAGCTTTGTCCGTGCCATATGAGCGAGAGTTACTTCTGGAAAGTCTATTTTGTTCTTCTGCATTCGAGGCTCAACAAGCAGGATGCTGAGGTTTTGTCCACACCTCAGGTAATGGAAGCCAGAGCAATGTGGATGCAAGAGCTACAATGTCAGACTCCAACATCAATTTCTAAAATGTCAGAACATGAATGGTTTGGAAGAAGCACTTCACGTTTAAAATACAGTTCAAATGCAATACATGAAGATTATGAAGATTACTCTCCGGTCTCATCACATACTCCTCATTATGAGGATACACTTCATAAGACGTATCCTTTTGAATCAACCATGCCTTCCACAGCCGATGAGACTGAGAAGCACCCAGTTGAGAGTAATGAGATGCCATTCATTGATAAGTCCGTTATCGAAGAAAAGCCCTTCATTAGGACTGAGGATAAGAATGTGACAGTTGGTCCGTCCTCTGAGATACTAGTTAATAGCTATGACGACGATGACAATGATGACTGGCCAGAGGATGATGGTGAATTATATGGGTGTAGTGGAACAGCTGTTGCTTTGATAAATGAAGAAGACATATCTTTCAGTGATCTTGAGGATGATGATTTCCAGGCACCCGCTAAATTAAGGTTCATCTCAAAGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

407

Amino Acids

46.13

Weight (kDa)

4.3

Isoelectric Point (pI)

68.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
BSD PF03909 166 - 221 1.7e-13 BSD domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 77
AatII GACGTC 2 cut(s) 81, 117
AccB1I GGYRCC 1 cut(s) 1189
AccII CGCG 3 cut(s) 202, 247, 443
AciI CCGC 6 cut(s) 91, 119, 126, 287, 311, 1194
AclWI GGATC 1 cut(s) 321
AcoI YGGCCR 2 cut(s) 336, 1085
AcsI RAATTY 1 cut(s) 227
AcyI GRCGYC 4 cut(s) 78, 114, 192, 261
AfaI GTAC 1 cut(s) 84
AfiI CCNNNNNNNGG 2 cut(s) 256, 1002
AflIII ACRYGT 1 cut(s) 200
AgsI TTSAA 6 cut(s) 188, 373, 506, 545, 807, 899
AhdI GACNNNNNGTC 1 cut(s) 1029
AhlI ACTAGT 1 cut(s) 1048
AjnI CCWGG 2 cut(s) 458, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 730, 762
AluBI AGCT 7 cut(s) 110, 305, 566, 583, 721, 1059, 1127
AluI AGCT 7 cut(s) 110, 305, 566, 583, 721, 1059, 1127
Alw26I GTCTC 3 cut(s) 449, 850, 920
AlwI GGATC 1 cut(s) 321
AoxI GGCC 4 cut(s) 58, 336, 423, 1085
ApeKI GCWGC 1 cut(s) 566
ApoI RAATTY 1 cut(s) 227
Asp700I GAANNNNTTC 1 cut(s) 784
AspLEI GCGC 4 cut(s) 249, 280, 398, 556
AspS9I GGNCC 1 cut(s) 1031
AsuC2I CCSGG 1 cut(s) 351
AsuHPI GGTGA 2 cut(s) 335, 1112
AvaII GGWCC 1 cut(s) 1031
AxyI CCTNAGG 1 cut(s) 684
BalI TGGCCA 1 cut(s) 1087
BanI GGYRCC 1 cut(s) 1189
BbsI GAAGAC 4 cut(s) 195, 222, 495, 1155
BbvCI CCTCAGC 1 cut(s) 666
BbvI GCAGC 1 cut(s) 553
BccI CCATC 2 cut(s) 358, 1091
BceAI ACGGC 3 cut(s) 61, 67, 383
BciT130I CCWGG 2 cut(s) 460, 1187
BciVI GTATCC 2 cut(s) 865, 900
BcnI CCSGG 1 cut(s) 351
BcoDI GTCTC 3 cut(s) 449, 850, 920
BcuI ACTAGT 1 cut(s) 1048
BfaI CTAG 2 cut(s) 432, 1049
BfuI GTATCC 2 cut(s) 865, 900
BisI GCNGC 1 cut(s) 567
BlsI GCNGC 1 cut(s) 568
Bme1390I CCNGG 3 cut(s) 351, 460, 1187
Bme18I GGWCC 1 cut(s) 1031
BmeRI GACNNNNNGTC 1 cut(s) 1029
BmgT120I GGNCC 1 cut(s) 1031
BmiI GGNNCC 1 cut(s) 1191
BmrFI CCNGG 3 cut(s) 351, 460, 1187
BmrI ACTGGG 1 cut(s) 935
BmsI GCATC 7 cut(s) 163, 435, 457, 505, 652, 702, 948
BmuI ACTGGG 1 cut(s) 935
BpiI GAAGAC 4 cut(s) 195, 222, 495, 1155
Bpu10I CCTNAGC 1 cut(s) 666
BpuEI CTTGAG 1 cut(s) 1190
BpuMI CCSGG 1 cut(s) 351
Bsa29I ATCGAT 2 cut(s) 298, 325
BsaBI GATNNNNATC 1 cut(s) 321
BsaHI GRCGYC 4 cut(s) 78, 114, 192, 261
BsaI GGTCTC 2 cut(s) 449, 850
BsaWI WCCGGW 1 cut(s) 841
BsaXI ACNNNNNCTCC 2 cut(s) 377, 407
Bsc4I CCNNNNNNNGG 2 cut(s) 256, 1002
Bse118I RCCGGY 1 cut(s) 334
Bse1I ACTGG 2 cut(s) 941, 1088
Bse21I CCTNAGG 1 cut(s) 684
Bse3DI GCAATG 1 cut(s) 711
Bse8I GATNNNNATC 1 cut(s) 321
BseBI CCWGG 2 cut(s) 460, 1187
BseCI ATCGAT 2 cut(s) 298, 325
BseGI GGATG 6 cut(s) 178, 448, 667, 717, 1099, 1180
BseJI GATNNNNATC 1 cut(s) 321
BseLI CCNNNNNNNGG 2 cut(s) 256, 1002
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 5 cut(s) 657, 698, 921, 999, 1032
BseNI ACTGG 2 cut(s) 941, 1088
BseRI GAGGAG 5 cut(s) 395, 398, 401, 404, 849
BseX3I CGGCCG 1 cut(s) 336
BseXI GCAGC 1 cut(s) 553
BseYI CCCAGC 1 cut(s) 519
Bsh1236I CGCG 3 cut(s) 202, 247, 443
Bsh1285I CGRYCG 2 cut(s) 325, 339
BshFI GGCC 4 cut(s) 60, 338, 425, 1087
BshNI GGYRCC 1 cut(s) 1189
BshVI ATCGAT 2 cut(s) 298, 325
BsiEI CGRYCG 2 cut(s) 325, 339
BsiSI CCGG 3 cut(s) 335, 351, 842
BslFI GGGAC 1 cut(s) 101
BslI CCNNNNNNNGG 2 cut(s) 256, 1002
BsmAI GTCTC 3 cut(s) 449, 850, 920
BsmFI GGGAC 1 cut(s) 101
BsmI GAATGC 1 cut(s) 640
BsnI GGCC 4 cut(s) 60, 338, 425, 1087
Bso31I GGTCTC 2 cut(s) 449, 850
Bsp143I GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
Bsp68I TCGCGA 1 cut(s) 443
BspACI CCGC 6 cut(s) 91, 119, 126, 287, 311, 1194
BspANI GGCC 4 cut(s) 60, 338, 425, 1087
BspCNI CTCAG 5 cut(s) 658, 697, 922, 1000, 1033
BspDI ATCGAT 2 cut(s) 298, 325
BspFNI CGCG 3 cut(s) 202, 247, 443
BspLI GGNNCC 1 cut(s) 1191
BspPI GGATC 1 cut(s) 321
BspT107I GGYRCC 1 cut(s) 1189
BspTNI GGTCTC 2 cut(s) 449, 850
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 334
BsrI ACTGG 2 cut(s) 941, 1088
BssAI RCCGGY 1 cut(s) 334
BssMI GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
BssNI GRCGYC 4 cut(s) 78, 114, 192, 261
Bst2UI CCWGG 2 cut(s) 460, 1187
Bst4CI ACNGT 2 cut(s) 803, 1027
Bst6I CTCTTC 1 cut(s) 372
BstACI GRCGYC 4 cut(s) 78, 114, 192, 261
BstC8I GCNNGC 3 cut(s) 12, 336, 531
BstDEI CTNAG 5 cut(s) 666, 684, 930, 1008, 1041
BstENI CCTNNNNNAGG 1 cut(s) 1000
BstF5I GGATG 6 cut(s) 178, 448, 667, 717, 1099, 1180
BstFNI CGCG 3 cut(s) 202, 247, 443
BstHHI GCGC 4 cut(s) 249, 280, 398, 556
BstKTI GATC 6 cut(s) 67, 298, 325, 329, 343, 1168
BstMAI GTCTC 3 cut(s) 449, 850, 920
BstMBI GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
BstMCI CGRYCG 2 cut(s) 325, 339
BstMWI GCNNNNNNNGC 4 cut(s) 286, 600, 646, 655
BstNI CCWGG 2 cut(s) 460, 1187
BstNSI RCATGY 1 cut(s) 533
BstSCI CCNGG 3 cut(s) 349, 458, 1185
BstUI CGCG 3 cut(s) 202, 247, 443
BstV1I GCAGC 1 cut(s) 553
BstV2I GAAGAC 4 cut(s) 195, 222, 495, 1155
BstXI CCANNNNNNTGG 2 cut(s) 203, 459
BstZI CGGCCG 1 cut(s) 336
Bsu15I ATCGAT 2 cut(s) 298, 325
Bsu36I CCTNAGG 1 cut(s) 684
BsuI GTATCC 2 cut(s) 865, 900
BsuRI GGCC 4 cut(s) 60, 338, 425, 1087
BsuTUI ATCGAT 2 cut(s) 298, 325
BtgZI GCGATG 2 cut(s) 424, 458
BtsCI GGATG 6 cut(s) 178, 448, 667, 717, 1099, 1180
BtsIMutI CAGTG 2 cut(s) 408, 1168
BtuMI TCGCGA 1 cut(s) 443
Cac8I GCNNGC 3 cut(s) 12, 336, 531
CfoI GCGC 4 cut(s) 249, 280, 398, 556
Cfr10I RCCGGY 1 cut(s) 334
Cfr13I GGNCC 1 cut(s) 1031
ClaI ATCGAT 2 cut(s) 298, 325
CseI GACGC 2 cut(s) 200, 250
CsiI ACCWGGT 1 cut(s) 458
Csp6I GTAC 1 cut(s) 83
CviAII CATG 6 cut(s) 6, 104, 530, 764, 818, 907
CviQI GTAC 1 cut(s) 83
DdeI CTNAG 5 cut(s) 666, 684, 930, 1008, 1041
DpnI GATC 6 cut(s) 66, 297, 324, 328, 342, 1167
DpnII GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
DraI TTTAAA 1 cut(s) 795
DrdI GACNNNNNNGTC 1 cut(s) 77
DriI GACNNNNNGTC 1 cut(s) 1029
DseDI GACNNNNNNGTC 1 cut(s) 77
EaeI YGGCCR 2 cut(s) 336, 1085
EagI CGGCCG 1 cut(s) 336
Eam1104I CTCTTC 1 cut(s) 372
Eam1105I GACNNNNNGTC 1 cut(s) 1029
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 300
EclXI CGGCCG 1 cut(s) 336
Eco31I GGTCTC 2 cut(s) 449, 850
Eco47I GGWCC 1 cut(s) 1031
Eco52I CGGCCG 1 cut(s) 336
Eco81I CCTNAGG 1 cut(s) 684
EcoNI CCTNNNNNAGG 1 cut(s) 1000
EcoRI GAATTC 1 cut(s) 227
EcoRII CCWGG 2 cut(s) 458, 1185
EcoT22I ATGCAT 1 cut(s) 450
FaeI CATG 6 cut(s) 9, 107, 533, 767, 821, 910
FalI AAGNNNNNCTT 2 cut(s) 769, 801
FaqI GGGAC 1 cut(s) 101
FatI CATG 6 cut(s) 5, 103, 529, 763, 817, 906
FauI CCCGC 2 cut(s) 126, 1201
FauNDI CATATG 1 cut(s) 597
Fnu4HI GCNGC 1 cut(s) 567
FokI GGATG 6 cut(s) 185, 435, 674, 724, 1106, 1187
Fsp4HI GCNGC 1 cut(s) 567
FspBI CTAG 2 cut(s) 432, 1049
GlaI GCGC 4 cut(s) 248, 279, 397, 555
GluI GCNGC 1 cut(s) 567
GsaI CCCAGC 1 cut(s) 523
HaeIII GGCC 4 cut(s) 60, 338, 425, 1087
HapII CCGG 3 cut(s) 335, 351, 842
HgaI GACGC 2 cut(s) 200, 250
HhaI GCGC 4 cut(s) 249, 280, 398, 556
Hin1I GRCGYC 4 cut(s) 78, 114, 192, 261
Hin1II CATG 6 cut(s) 9, 107, 533, 767, 821, 910
Hin6I GCGC 4 cut(s) 247, 278, 396, 554
HinP1I GCGC 4 cut(s) 247, 278, 396, 554
HinfI GANTC 3 cut(s) 576, 733, 899
HpaII CCGG 3 cut(s) 335, 351, 842
HphI GGTGA 2 cut(s) 335, 1112
Hpy166II GTNNAC 1 cut(s) 678
Hpy188I TCNGA 8 cut(s) 172, 226, 295, 331, 514, 732, 760, 1042
Hpy188III TCNNGA 6 cut(s) 68, 442, 452, 476, 616, 1169
Hpy8I GTNNAC 1 cut(s) 678
Hpy99I CGWCG 9 cut(s) 47, 53, 74, 77, 80, 83, 266, 404, 1070
HpyAV CCTTC 4 cut(s) 50, 436, 921, 1006
HpyCH4III ACNGT 2 cut(s) 803, 1027
HpyCH4IV ACGT 4 cut(s) 78, 114, 790, 887
HpyCH4V TGCA 5 cut(s) 176, 448, 640, 715, 812
HpyF10VI GCNNNNNNNGC 4 cut(s) 286, 600, 646, 655
HpyF3I CTNAG 5 cut(s) 666, 684, 930, 1008, 1041
HpySE526I ACGT 4 cut(s) 78, 114, 790, 887
Hsp92I GRCGYC 4 cut(s) 78, 114, 192, 261
Hsp92II CATG 6 cut(s) 9, 107, 533, 767, 821, 910
HspAI GCGC 4 cut(s) 247, 278, 396, 554
KroI GCCGGC 1 cut(s) 334
KroNI GCCGGC 1 cut(s) 336
Kzo9I GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
Lsp1109I GCAGC 1 cut(s) 553
LweI GCATC 7 cut(s) 163, 435, 457, 505, 652, 702, 948
MabI ACCWGGT 1 cut(s) 458
MaeI CTAG 2 cut(s) 432, 1049
MaeII ACGT 4 cut(s) 78, 114, 790, 887
MaeIII GTNAC 3 cut(s) 406, 608, 1021
MalI GATC 6 cut(s) 66, 297, 324, 328, 342, 1167
MboI GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
MlsI TGGCCA 1 cut(s) 1087
MluCI AATT 5 cut(s) 227, 251, 744, 1103, 1199
MluI ACGCGT 1 cut(s) 200
MluNI TGGCCA 1 cut(s) 1087
MlyI GAGTC 1 cut(s) 727
MmeI TCCRAC 2 cut(s) 444, 761
Mox20I TGGCCA 1 cut(s) 1087
Mph1103I ATGCAT 1 cut(s) 450
MroNI GCCGGC 1 cut(s) 334
MroXI GAANNNNTTC 1 cut(s) 784
MscI TGGCCA 1 cut(s) 1087
MseI TTAA 3 cut(s) 794, 1053, 1202
MslI CAYNNNNRTG 1 cut(s) 443
Msp20I TGGCCA 1 cut(s) 1087
MspA1I CMGCKG 1 cut(s) 1127
MspI CCGG 3 cut(s) 335, 351, 842
MspR9I CCNGG 3 cut(s) 351, 460, 1187
Mva1269I GAATGC 1 cut(s) 640
MvaI CCWGG 2 cut(s) 460, 1187
MvnI CGCG 3 cut(s) 202, 247, 443
MwoI GCNNNNNNNGC 4 cut(s) 286, 600, 646, 655
NaeI GCCGGC 1 cut(s) 336
NciI CCSGG 1 cut(s) 351
NdeI CATATG 1 cut(s) 597
NdeII GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
NgoMIV GCCGGC 1 cut(s) 334
NlaIII CATG 6 cut(s) 9, 107, 533, 767, 821, 910
NlaIV GGNNCC 1 cut(s) 1191
NmeAIII GCCGAG 1 cut(s) 582
NmuCI GTSAC 2 cut(s) 406, 1021
NruI TCGCGA 1 cut(s) 443
NsiI ATGCAT 1 cut(s) 450
NspI RCATGY 1 cut(s) 533
PaeI GCATGC 1 cut(s) 533
PcsI WCGNNNNNNNCGW 4 cut(s) 51, 75, 78, 365
PctI GAATGC 1 cut(s) 640
PdiI GCCGGC 1 cut(s) 336
PdmI GAANNNNTTC 1 cut(s) 784
PfeI GAWTC 2 cut(s) 576, 899
PflFI GACNNNGTC 2 cut(s) 77, 416
PkrI GCNGC 1 cut(s) 568
Ple19I CGATCG 1 cut(s) 325
PleI GAGTC 1 cut(s) 727
PpsI GAGTC 1 cut(s) 727
Psp6I CCWGG 2 cut(s) 458, 1185
PspFI CCCAGC 1 cut(s) 519
PspGI CCWGG 2 cut(s) 458, 1185
PspN4I GGNNCC 1 cut(s) 1191
PspPI GGNCC 1 cut(s) 1031
PsyI GACNNNGTC 2 cut(s) 77, 416
PvuI CGATCG 1 cut(s) 325
PvuII CAGCTG 1 cut(s) 1127
RruI TCGCGA 1 cut(s) 443
RsaI GTAC 1 cut(s) 84
RsaNI GTAC 1 cut(s) 83
RseI CAYNNNNRTG 1 cut(s) 443
SaqAI TTAA 3 cut(s) 794, 1053, 1202
SatI GCNGC 1 cut(s) 567
Sau3AI GATC 6 cut(s) 64, 295, 322, 326, 340, 1165
Sau96I GGNCC 1 cut(s) 1031
SchI GAGTC 1 cut(s) 727
ScrFI CCNGG 3 cut(s) 351, 460, 1187
SexAI ACCWGGT 1 cut(s) 458
SfaNI GCATC 7 cut(s) 163, 435, 457, 505, 652, 702, 948
SinI GGWCC 1 cut(s) 1031
SmiMI CAYNNNNRTG 1 cut(s) 443
SmlI CTYRAG 1 cut(s) 1169
SmoI CTYRAG 1 cut(s) 1169
SpeI ACTAGT 1 cut(s) 1048
SphI GCATGC 1 cut(s) 533
Sse9I AATT 5 cut(s) 227, 251, 744, 1103, 1199
SsiI CCGC 6 cut(s) 91, 119, 126, 287, 311, 1194
SspMI CTAG 2 cut(s) 432, 1049
StyD4I CCNGG 3 cut(s) 349, 458, 1185
TaaI ACNGT 2 cut(s) 803, 1027
TaiI ACGT 4 cut(s) 81, 117, 793, 890
TaqI TCGA 6 cut(s) 42, 298, 325, 579, 644, 984
TasI AATT 5 cut(s) 227, 251, 744, 1103, 1199
TfiI GAWTC 2 cut(s) 576, 899
Tru1I TTAA 3 cut(s) 794, 1053, 1202
Tru9I TTAA 3 cut(s) 794, 1053, 1202
TscAI CASTG 2 cut(s) 415, 1168
TseFI GTSAC 2 cut(s) 406, 1021
TseI GCWGC 1 cut(s) 566
Tsp45I GTSAC 2 cut(s) 406, 1021
TspGWI ACGGA 4 cut(s) 26, 579, 967, 1023
TspRI CASTG 2 cut(s) 415, 1168
Tth111I GACNNNGTC 2 cut(s) 77, 416
VpaK11BI GGWCC 1 cut(s) 1031
XagI CCTNNNNNAGG 1 cut(s) 1000
XapI RAATTY 1 cut(s) 227
XceI RCATGY 1 cut(s) 533
XmnI GAANNNNTTC 1 cut(s) 784
XspI CTAG 2 cut(s) 432, 1049
ZraI GACGTC 2 cut(s) 79, 115
Zsp2I ATGCAT 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.