Rh7DG094000

Cinnamyl alcohol dehydrogenase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0016006
Physical Location & Seq
Reverse (-)
7880889 .. 7891948
11060 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG094000.1

Sequence Viewer

Length: 996 bp
ATGTGGTTTACTGGTCGTGCGATTAGGGCTTCTTGCAGTACTAATTGTACTGGGAGTGGTTTGATTAGAGCTGCAACGGCGTCGTTTGCGAGGTACTTCTCTCGGGAACGCGCAGAGAATTTGAGGAAAATCAACCCTAAGGTCAGCTTTCCGGAGGCGAATTCAATTGCTCGGGATCTATACGACGTCGTCAAGCAACATGGACCTATCACCATCCCCAATACTTGGGCTCAAGCCAAGGAGTCTGGTGTTAGTGGATTGAATAGCAAAACACACATGAAGATAATGCTCAAATGGATGAGAGGAAGGAAGATGCTGAAGCTGTTTCCCAACCAAGTTGGCTCAAACAAAAAATTCTTGTTATGTACACTGCCTGAAGACCCTCATGTTACTGAGTTTAGAACTTCCACCGCAGTAAAAGTGTTATCTAAGAAGCCTTCCTCCAAGAGGAAAAAGCAAAAGCAAAAGAGGGATCTTGGAACCGATGATGTTTCCATAAGAATTACTCATTGCGGAGTTTGTTATGCTGATGTGATTTGGACCAGAAATAAGCATGGAGACTCCAAGTACCCTCTAGTGCCTGGACACGAGATTGCGGGTATTGTAAAAGAGGTAGGTTCAAATGTTAAGCGGTTCAAAGTCGGTGACCATGTTGGAGTGGGAACCTATGTCAACTCATGCAGAGATTGTGAGTATTGCAATGATGGACTTGAAGTTCAGTGCGTAAAGGGATCAGTTTTCACTTTTAATGGTGTTGATGCTGATGGTACAATTACGAAAGGGGGATACTCCAGTCACATAGTTGTTCACGATAGGTATGAAGCTTTGGTGAAGTCACTTGACTTTATAGTTGACACAGCGTCTGGTGATCACCCATTTGATCCATACATGGCATTGTTAAAGACGGGTGGAATTTTCGTCTTGGTGGGATTCCCCAGTGAAGTCAAATTCAGTCCTGCGAGCCTTAATCTTGGTACTTTGGCATTTTTCAAATGA

Protein Analysis

331

Amino Acids

36.59

Weight (kDa)

9.54

Isoelectric Point (pI)

24.66

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ADH_N PF08240 161 - 273 3.4e-23 Alcohol dehydrogenase GroES-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0016006)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G73940
fragaria_vesca FvH4_5g10193
malus_domestica MD06G1126400.v1.1
prunus_persica Prupe.5G136900_v2.0.a1
pyrus_communis pycom06g11650 pycom14g11760
rosa_chinensis RchiOBHm_Chr7g0188041
rosa_multiflora Rmu_ssc0000422.1_g000016
rosa_roxburghii Rroxscaffold_3G00266790
rosa_rugosa Rorug06G0487600
rosa_samantha Rh7AG091800 Rh7AG091900 Rh7BG093500 Rh7DG094000
rosa_wichuraiana Rw7G007950

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB7I CCANNNNNTGG 1 cut(s) 225
AccII CGCG 1 cut(s) 111
AccIII TCCGGA 1 cut(s) 151
AciI CCGC 4 cut(s) 411, 513, 596, 631
AclWI GGATC 4 cut(s) 183, 480, 739, 875
AcsI RAATTY 5 cut(s) 118, 160, 353, 912, 947
AcuI CTGAAG 2 cut(s) 338, 396
AcyI GRCGYC 2 cut(s) 80, 186
AfaI GTAC 7 cut(s) 40, 49, 95, 367, 569, 769, 976
AfiI CCNNNNNNNGG 2 cut(s) 225, 447
AgsI TTSAA 6 cut(s) 165, 262, 621, 637, 713, 991
AhdI GACNNNNNGTC 1 cut(s) 859
AjnI CCWGG 1 cut(s) 580
AloI GAACNNNNNNTCC 2 cut(s) 699, 731
AluBI AGCT 4 cut(s) 71, 147, 322, 824
AluI AGCT 4 cut(s) 71, 147, 322, 824
Alw26I GTCTC 1 cut(s) 552
AlwI GGATC 4 cut(s) 183, 480, 739, 875
AlwNI CAGNNNCTG 1 cut(s) 863
Ama87I CYCGRG 2 cut(s) 102, 171
Aor13HI TCCGGA 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 71
ApoI RAATTY 5 cut(s) 118, 160, 353, 912, 947
AspLEI GCGC 1 cut(s) 113
AspS9I GGNCC 2 cut(s) 203, 540
AsuHPI GGTGA 5 cut(s) 202, 656, 841, 863, 878
AvaI CYCGRG 2 cut(s) 102, 171
AvaII GGWCC 2 cut(s) 203, 540
AxyI CCTNAGG 1 cut(s) 138
BaeI ACNNNNGTAYC 2 cut(s) 778, 811
BanII GRGCYC 1 cut(s) 232
BauI CACGAG 1 cut(s) 587
BbsI GAAGAC 1 cut(s) 384
BbvI GCAGC 1 cut(s) 58
BccI CCATC 3 cut(s) 221, 698, 758
BceAI ACGGC 1 cut(s) 93
BcgI CGANNNNNNTGC 2 cut(s) 63, 97
BciT130I CCWGG 1 cut(s) 582
BciVI GTATCC 1 cut(s) 779
BclI TGATCA 1 cut(s) 868
BcoDI GTCTC 1 cut(s) 552
BfaI CTAG 1 cut(s) 575
BfuI GTATCC 1 cut(s) 779
BisI GCNGC 1 cut(s) 72
BlsI GCNGC 1 cut(s) 73
BmcAI AGTACT 1 cut(s) 40
Bme1390I CCNGG 1 cut(s) 582
Bme18I GGWCC 2 cut(s) 203, 540
BmeRI GACNNNNNGTC 1 cut(s) 859
BmeT110I CYCGRG 2 cut(s) 102, 171
BmgT120I GGNCC 2 cut(s) 203, 540
BmiI GGNNCC 2 cut(s) 481, 664
BmrFI CCNGG 1 cut(s) 582
BmrI ACTGGG 2 cut(s) 60, 930
BmsI GCATC 2 cut(s) 303, 748
BmuI ACTGGG 2 cut(s) 60, 930
BpiI GAAGAC 1 cut(s) 384
BpmI CTGGAG 1 cut(s) 775
BpuEI CTTGAG 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 80, 186
BsaJI CCNNGG 1 cut(s) 237
BsaWI WCCGGW 1 cut(s) 151
Bsc4I CCNNNNNNNGG 2 cut(s) 225, 447
Bse1I ACTGG 4 cut(s) 16, 55, 792, 936
Bse21I CCTNAGG 1 cut(s) 138
Bse3DI GCAATG 2 cut(s) 508, 706
BseAI TCCGGA 1 cut(s) 151
BseBI CCWGG 1 cut(s) 582
BseDI CCNNGG 1 cut(s) 237
BseGI GGATG 2 cut(s) 213, 303
BseLI CCNNNNNNNGG 2 cut(s) 225, 447
BseMI GCAATG 2 cut(s) 508, 706
BseMII CTCAG 1 cut(s) 384
BseNI ACTGG 4 cut(s) 16, 55, 792, 936
BseXI GCAGC 1 cut(s) 58
Bsh1236I CGCG 1 cut(s) 111
BsiHKCI CYCGRG 2 cut(s) 102, 171
BsiSI CCGG 1 cut(s) 152
BslI CCNNNNNNNGG 2 cut(s) 225, 447
BsmAI GTCTC 1 cut(s) 552
BsoBI CYCGRG 2 cut(s) 102, 171
Bsp1286I GDGCHC 1 cut(s) 232
Bsp13I TCCGGA 1 cut(s) 151
Bsp1407I TGTACA 1 cut(s) 365
Bsp143I GATC 5 cut(s) 175, 472, 731, 868, 880
BspACI CCGC 4 cut(s) 411, 513, 596, 631
BspCNI CTCAG 1 cut(s) 385
BspEI TCCGGA 1 cut(s) 151
BspFNI CGCG 1 cut(s) 111
BspLI GGNNCC 2 cut(s) 481, 664
BspPI GGATC 4 cut(s) 183, 480, 739, 875
BsrDI GCAATG 2 cut(s) 508, 706
BsrGI TGTACA 1 cut(s) 365
BsrI ACTGG 4 cut(s) 16, 55, 792, 936
BssECI CCNNGG 1 cut(s) 237
BssMI GATC 5 cut(s) 175, 472, 731, 868, 880
BssNI GRCGYC 2 cut(s) 80, 186
BssSI CACGAG 1 cut(s) 587
BssT1I CCWWGG 1 cut(s) 237
Bst2BI CACGAG 1 cut(s) 587
Bst2UI CCWGG 1 cut(s) 582
BstACI GRCGYC 2 cut(s) 80, 186
BstAUI TGTACA 1 cut(s) 365
BstC8I GCNNGC 1 cut(s) 961
BstDEI CTNAG 3 cut(s) 138, 393, 429
BstEII GGTNACC 1 cut(s) 644
BstENI CCTNNNNNAGG 1 cut(s) 445
BstF5I GGATG 2 cut(s) 213, 303
BstFNI CGCG 1 cut(s) 111
BstHHI GCGC 1 cut(s) 113
BstKTI GATC 5 cut(s) 178, 475, 734, 871, 883
BstMAI GTCTC 1 cut(s) 552
BstMBI GATC 5 cut(s) 175, 472, 731, 868, 880
BstMWI GCNNNNNNNGC 3 cut(s) 26, 77, 86
BstNI CCWGG 1 cut(s) 582
BstPI GGTNACC 1 cut(s) 644
BstSCI CCNGG 1 cut(s) 580
BstUI CGCG 1 cut(s) 111
BstV1I GCAGC 1 cut(s) 58
BstV2I GAAGAC 1 cut(s) 384
BstX2I RGATCY 2 cut(s) 175, 472
BstYI RGATCY 2 cut(s) 175, 472
Bsu36I CCTNAGG 1 cut(s) 138
BsuI GTATCC 1 cut(s) 779
BtsCI GGATG 2 cut(s) 213, 303
BtsI GCAGTG 1 cut(s) 368
BtsIMutI CAGTG 3 cut(s) 368, 725, 943
Cac8I GCNNGC 1 cut(s) 961
CaiI CAGNNNCTG 1 cut(s) 863
CfoI GCGC 1 cut(s) 113
Cfr13I GGNCC 2 cut(s) 203, 540
CseI GACGC 2 cut(s) 69, 849
Csp6I GTAC 7 cut(s) 39, 48, 94, 366, 568, 768, 975
CviAII CATG 7 cut(s) 200, 277, 386, 554, 650, 678, 889
CviQI GTAC 7 cut(s) 39, 48, 94, 366, 568, 768, 975
DdeI CTNAG 3 cut(s) 138, 393, 429
DpnI GATC 5 cut(s) 177, 474, 733, 870, 882
DpnII GATC 5 cut(s) 175, 472, 731, 868, 880
DriI GACNNNNNGTC 1 cut(s) 859
Eam1105I GACNNNNNGTC 1 cut(s) 859
Eco130I CCWWGG 1 cut(s) 237
Eco24I GRGCYC 1 cut(s) 232
Eco47I GGWCC 2 cut(s) 203, 540
Eco57I CTGAAG 2 cut(s) 338, 396
Eco81I CCTNAGG 1 cut(s) 138
Eco88I CYCGRG 2 cut(s) 102, 171
Eco91I GGTNACC 1 cut(s) 644
EcoNI CCTNNNNNAGG 1 cut(s) 445
EcoO65I GGTNACC 1 cut(s) 644
EcoRI GAATTC 1 cut(s) 160
EcoRII CCWGG 1 cut(s) 580
EcoT14I CCWWGG 1 cut(s) 237
EcoT38I GRGCYC 1 cut(s) 232
ErhI CCWWGG 1 cut(s) 237
FaeI CATG 7 cut(s) 203, 280, 389, 557, 653, 681, 892
FalI AAGNNNNNCTT 2 cut(s) 131, 163
FatI CATG 7 cut(s) 199, 276, 385, 553, 649, 677, 888
FauI CCCGC 1 cut(s) 589
FbaI TGATCA 1 cut(s) 868
Fnu4HI GCNGC 1 cut(s) 72
FokI GGATG 2 cut(s) 200, 310
FriOI GRGCYC 1 cut(s) 232
Fsp4HI GCNGC 1 cut(s) 72
FspBI CTAG 1 cut(s) 575
GlaI GCGC 1 cut(s) 112
GluI GCNGC 1 cut(s) 72
GsuI CTGGAG 1 cut(s) 775
HapII CCGG 1 cut(s) 152
HgaI GACGC 2 cut(s) 69, 849
HhaI GCGC 1 cut(s) 113
Hin1I GRCGYC 2 cut(s) 80, 186
Hin1II CATG 7 cut(s) 203, 280, 389, 557, 653, 681, 892
Hin6I GCGC 1 cut(s) 111
HinP1I GCGC 1 cut(s) 111
HincII GTYRAC 2 cut(s) 673, 853
HindII GTYRAC 2 cut(s) 673, 853
HindIII AAGCTT 1 cut(s) 822
HinfI GANTC 3 cut(s) 242, 560, 930
HpaII CCGG 1 cut(s) 152
HphI GGTGA 5 cut(s) 202, 656, 841, 863, 878
Hpy166II GTNNAC 5 cut(s) 9, 368, 673, 808, 853
Hpy188III TCNNGA 4 cut(s) 104, 152, 173, 809
Hpy8I GTNNAC 5 cut(s) 9, 368, 673, 808, 853
Hpy99I CGWCG 3 cut(s) 85, 188, 191
HpyAV CCTTC 2 cut(s) 300, 447
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 4 cut(s) 36, 74, 681, 699
HpyF10VI GCNNNNNNNGC 3 cut(s) 26, 77, 86
HpyF3I CTNAG 3 cut(s) 138, 393, 429
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 2 cut(s) 80, 186
Hsp92II CATG 7 cut(s) 203, 280, 389, 557, 653, 681, 892
HspAI GCGC 1 cut(s) 111
Kpn2I TCCGGA 1 cut(s) 151
Ksp22I TGATCA 1 cut(s) 868
Kzo9I GATC 5 cut(s) 175, 472, 731, 868, 880
Lsp1109I GCAGC 1 cut(s) 58
LweI GCATC 2 cut(s) 303, 748
MaeI CTAG 1 cut(s) 575
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 4 cut(s) 388, 644, 794, 834
MalI GATC 5 cut(s) 177, 474, 733, 870, 882
MboI GATC 5 cut(s) 175, 472, 731, 868, 880
MboII GAAGA 3 cut(s) 292, 322, 389
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 2 cut(s) 175, 472
MhlI GDGCHC 1 cut(s) 232
MluCI AATT 9 cut(s) 43, 118, 160, 165, 353, 501, 771, 912, 947
MlyI GAGTC 2 cut(s) 251, 554
MmeI TCCRAC 1 cut(s) 634
MroI TCCGGA 1 cut(s) 151
MseI TTAA 4 cut(s) 627, 747, 899, 966
MspI CCGG 1 cut(s) 152
MspR9I CCNGG 1 cut(s) 582
MunI CAATTG 1 cut(s) 165
MvaI CCWGG 1 cut(s) 582
MvnI CGCG 1 cut(s) 111
MwoI GCNNNNNNNGC 3 cut(s) 26, 77, 86
NdeII GATC 5 cut(s) 175, 472, 731, 868, 880
NlaIII CATG 7 cut(s) 203, 280, 389, 557, 653, 681, 892
NlaIV GGNNCC 2 cut(s) 481, 664
NmuCI GTSAC 3 cut(s) 644, 794, 834
PfeI GAWTC 1 cut(s) 930
PflFI GACNNNGTC 1 cut(s) 188
PflMI CCANNNNNTGG 1 cut(s) 225
PkrI GCNGC 1 cut(s) 73
PleI GAGTC 2 cut(s) 250, 554
PpsI GAGTC 2 cut(s) 250, 554
Psp6I CCWGG 1 cut(s) 580
PspEI GGTNACC 1 cut(s) 644
PspGI CCWGG 1 cut(s) 580
PspN4I GGNNCC 2 cut(s) 481, 664
PspPI GGNCC 2 cut(s) 203, 540
PstNI CAGNNNCTG 1 cut(s) 863
PsuI RGATCY 2 cut(s) 175, 472
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 7 cut(s) 40, 49, 95, 367, 569, 769, 976
RsaNI GTAC 7 cut(s) 39, 48, 94, 366, 568, 768, 975
SaqAI TTAA 4 cut(s) 627, 747, 899, 966
SatI GCNGC 1 cut(s) 72
Sau3AI GATC 5 cut(s) 175, 472, 731, 868, 880
Sau96I GGNCC 2 cut(s) 203, 540
ScaI AGTACT 1 cut(s) 40
SchI GAGTC 2 cut(s) 251, 554
ScrFI CCNGG 1 cut(s) 582
SduI GDGCHC 1 cut(s) 232
SfaNI GCATC 2 cut(s) 303, 748
SinI GGWCC 2 cut(s) 203, 540
SmlI CTYRAG 1 cut(s) 231
SmoI CTYRAG 1 cut(s) 231
Sse9I AATT 9 cut(s) 43, 118, 160, 165, 353, 501, 771, 912, 947
SsiI CCGC 4 cut(s) 411, 513, 596, 631
SspMI CTAG 1 cut(s) 575
StyD4I CCNGG 1 cut(s) 580
StyI CCWWGG 1 cut(s) 237
TaiI ACGT 1 cut(s) 189
TasI AATT 9 cut(s) 43, 118, 160, 165, 353, 501, 771, 912, 947
TatI WGTACW 3 cut(s) 38, 47, 365
TfiI GAWTC 1 cut(s) 930
Tru1I TTAA 4 cut(s) 627, 747, 899, 966
Tru9I TTAA 4 cut(s) 627, 747, 899, 966
TscAI CASTG 3 cut(s) 375, 725, 943
TseFI GTSAC 3 cut(s) 644, 794, 834
TseI GCWGC 1 cut(s) 71
Tsp45I GTSAC 3 cut(s) 644, 794, 834
TspDTI ATGAA 2 cut(s) 293, 834
TspRI CASTG 3 cut(s) 375, 725, 943
Tth111I GACNNNGTC 1 cut(s) 188
Van91I CCANNNNNTGG 1 cut(s) 225
VpaK11BI GGWCC 2 cut(s) 203, 540
XagI CCTNNNNNAGG 1 cut(s) 445
XapI RAATTY 5 cut(s) 118, 160, 353, 912, 947
XspI CTAG 1 cut(s) 575
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.