AT1G74680

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0007835
Physical Location & Seq
Forward (+)
28059108 .. 28061130
2023 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G74680.1

Sequence Viewer

Length: 1386 bp
ATGATAAAAATGTCGGAAAAGAGTTTGCTTTCTTCAAAATTCCTCTTTTACACGATAACTGTTTCAACGCTACTCTTCATTGTCTCTTCTCTCGTCTTCCTTCAACGCCACGATTCTTCTTTCACTTCAAGTTTAGTTCGCAAGCTGATTCTTCCAAGAACAGACATCAAGAACGAAGAATTCGGACTAATCGATACGAAATGCGATCGAGACAGAGATGTGTTGAAGGTGTTTATGTACGATCTACCCTCTGAGTTTCACTTTGGGATATTGAATTGGCACAAAAAAGGATCTGAGATTTGGCCAAATGTCAACAACATTAGTACAATCCCATCTTATCCTGGTGGGTTAAATCGTCAACACAGTGTAGAGTATTGGCTAACACTTGATTTATTAGCTTCAGAGACACCTGAAATCAAGAGACCTTGTAGTAGTGCAGCTATTAGAGTGAAGAACTCTAATGAAGCTGATATAGTTTTCGTGCCTTTCTTTGCTTCGTTGAGTTACAATCGGAAATCGAAGCTCCGTGGAAACGAAACAAGCAGTGATGATAGATTGTTGCAAGAAAGATTAGTTGAGTTCTTGAAAAGTCAAGATGAGTGGAAAAGATTTGATGGGAAAGATCATTTGATAGTAGCTCACCATCCAAACAGTTTGCTCTATGCAAGAAACTTTCTTGGATCAGCAATGTTTGTTCTTTCGGATTTCGGAAGGTATTCGTCTGCTATCGCCAATCTTGAGAAAGATATCATTGCGCCTTACGTGCACGTCGTTAAGACTATCTCTAACAACGAGTCAGCTTCGTTTGAGAAGCGTCCTGTATTGGCATATTTCCAAGGAGCTATCTATAGAAAAGATGGTGGAACTATTCGTCAAGAACTGTATAACCTTCTGAAAGATGAGAAAGATGTTCACTTTGCATTTGGAACTGTTAGAGGAAATGGGACTAAACAAACTGGTAAAGGAATGGCTTCCTCGAAGTTTTGTCTCAATATCGCGGGTGACACTCCTTCCTCTAACCGTCTTTTCGATGCCATTGTGAGCCATTGTGTTCCGGTTATAATCAGTGATCAGATTGAGCTTCCATTTGAAGATACTCTTGATTATTCGGGTTTCTCCGTGTTTGTGCATGCTTCTGAAGCTGTAAAGAAAGAGTTCTTGGTGAATATTCTCAGAGGGATAACAGAGGATCAGTGGAAGAAGAAGTGGGGGAGATTGAAAGAGGTTGCTGGGTGTTTTGAGTATCGCTTTCCTTCGCAAGTTGGAGATTCTGTGAATATGATTTGGTCAGCGGTTTCGCATAAGCTTTCTTCACTTCAGTTTGATGTTCATAGAAAGAATCGCTACCGTAGATCTGAAATGTTTGATAGAAACGGTTCGAGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

461

Amino Acids

52.66

Weight (kDa)

8.93

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 74 - 389 3.4e-65 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1061
AccII CGCG 1 cut(s) 998
AciI CCGC 2 cut(s) 998, 1292
AclWI GGATC 3 cut(s) 298, 688, 1197
AcoI YGGCCR 1 cut(s) 302
AcsI RAATTY 2 cut(s) 38, 179
AcuI CTGAAG 3 cut(s) 384, 1158, 1301
AfaI GTAC 2 cut(s) 239, 325
AgsI TTSAA 9 cut(s) 36, 66, 104, 129, 226, 274, 586, 1091, 1219
AjiI CACGTC 1 cut(s) 769
AjnI CCWGG 1 cut(s) 340
AjuI GAANNNNNNNTTGG 2 cut(s) 1142, 1174
Alw21I GWGCWC 1 cut(s) 768
Alw26I GTCTC 5 cut(s) 88, 204, 398, 415, 992
Alw44I GTGCAC 1 cut(s) 764
AlwI GGATC 3 cut(s) 298, 688, 1197
AoxI GGCC 1 cut(s) 302
ApaLI GTGCAC 1 cut(s) 764
ApeKI GCWGC 1 cut(s) 437
ApoI RAATTY 2 cut(s) 38, 179
Asp700I GAANNNNTTC 4 cut(s) 715, 970, 1154, 1375
AspLEI GCGC 1 cut(s) 757
AsuHPI GGTGA 3 cut(s) 632, 1013, 1174
BaeGI GKGCMC 1 cut(s) 768
BalI TGGCCA 1 cut(s) 304
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 768
BbvI GCAGC 1 cut(s) 449
BccI CCATC 4 cut(s) 340, 608, 651, 851
BciT130I CCWGG 1 cut(s) 342
BclI TGATCA 1 cut(s) 1069
BcoDI GTCTC 5 cut(s) 88, 204, 398, 415, 992
BfmI CTRYAG 1 cut(s) 847
BglII AGATCT 1 cut(s) 1352
BisI GCNGC 1 cut(s) 438
BlsI GCNGC 1 cut(s) 439
Bme1390I CCNGG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 769
BmrFI CCNGG 1 cut(s) 342
BmsI GCATC 1 cut(s) 1021
BpiI GAAGAC 1 cut(s) 88
BpuEI CTTGAG 1 cut(s) 758
Bsa29I ATCGAT 1 cut(s) 192
BsaAI YACGTR 1 cut(s) 763
BsaI GGTCTC 1 cut(s) 415
BsaJI CCNNGG 2 cut(s) 526, 835
BsaWI WCCGGW 1 cut(s) 1054
BsaXI ACNNNNNCTCC 2 cut(s) 1257, 1287
Bse1I ACTGG 1 cut(s) 961
Bse3DI GCAATG 2 cut(s) 693, 750
BseBI CCWGG 1 cut(s) 342
BseCI ATCGAT 1 cut(s) 192
BseDI CCNNGG 2 cut(s) 526, 835
BseGI GGATG 1 cut(s) 643
BseMI GCAATG 2 cut(s) 693, 750
BseMII CTCAG 3 cut(s) 243, 285, 1186
BseNI ACTGG 1 cut(s) 961
BseSI GKGCMC 1 cut(s) 768
BseXI GCAGC 1 cut(s) 449
BseYI CCCAGC 1 cut(s) 1229
BsgI GTGCAG 1 cut(s) 456
Bsh1236I CGCG 1 cut(s) 998
Bsh1285I CGRYCG 1 cut(s) 208
BshFI GGCC 1 cut(s) 304
BshVI ATCGAT 1 cut(s) 192
BsiEI CGRYCG 1 cut(s) 208
BsiHKAI GWGCWC 1 cut(s) 768
BsiSI CCGG 1 cut(s) 1055
BslFI GGGAC 1 cut(s) 958
BsmAI GTCTC 5 cut(s) 88, 204, 398, 415, 992
BsmFI GGGAC 1 cut(s) 958
BsnI GGCC 1 cut(s) 304
Bso31I GGTCTC 1 cut(s) 415
Bsp1286I GDGCHC 1 cut(s) 768
Bsp143I GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
BspACI CCGC 2 cut(s) 998, 1292
BspANI GGCC 1 cut(s) 304
BspCNI CTCAG 3 cut(s) 244, 286, 1185
BspDI ATCGAT 1 cut(s) 192
BspFNI CGCG 1 cut(s) 998
BspPI GGATC 3 cut(s) 298, 688, 1197
BspTNI GGTCTC 1 cut(s) 415
BsrDI GCAATG 2 cut(s) 693, 750
BsrI ACTGG 1 cut(s) 961
BssECI CCNNGG 2 cut(s) 526, 835
BssMI GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
BssT1I CCWWGG 1 cut(s) 835
Bst2UI CCWGG 1 cut(s) 342
Bst4CI ACNGT 8 cut(s) 61, 365, 653, 882, 931, 1022, 1349, 1376
Bst6I CTCTTC 2 cut(s) 80, 91
BstBAI YACGTR 1 cut(s) 763
BstC8I GCNNGC 2 cut(s) 143, 1131
BstDEI CTNAG 3 cut(s) 252, 294, 1172
BstDSI CCRYGG 1 cut(s) 526
BstF5I GGATG 1 cut(s) 643
BstFNI CGCG 1 cut(s) 998
BstHHI GCGC 1 cut(s) 757
BstKTI GATC 8 cut(s) 208, 244, 293, 625, 683, 1072, 1192, 1355
BstMAI GTCTC 5 cut(s) 88, 204, 398, 415, 992
BstMBI GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
BstMCI CGRYCG 1 cut(s) 208
BstMWI GCNNNNNNNGC 2 cut(s) 763, 1139
BstNI CCWGG 1 cut(s) 342
BstNSI RCATGY 1 cut(s) 1133
BstSCI CCNGG 1 cut(s) 340
BstSFI CTRYAG 1 cut(s) 847
BstSLI GKGCMC 1 cut(s) 768
BstUI CGCG 1 cut(s) 998
BstV1I GCAGC 1 cut(s) 449
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 2 cut(s) 290, 1352
BstYI RGATCY 2 cut(s) 290, 1352
Bsu15I ATCGAT 1 cut(s) 192
BsuRI GGCC 1 cut(s) 304
BsuTUI ATCGAT 1 cut(s) 192
BtgI CCRYGG 1 cut(s) 526
BtrI CACGTC 1 cut(s) 769
BtsCI GGATG 1 cut(s) 643
BtsI GCAGTG 1 cut(s) 550
BtsIMutI CAGTG 4 cut(s) 370, 550, 1072, 1199
Cac8I GCNNGC 2 cut(s) 143, 1131
CfoI GCGC 1 cut(s) 757
ClaI ATCGAT 1 cut(s) 192
CseI GACGC 1 cut(s) 803
Csp6I GTAC 2 cut(s) 238, 324
CspCI CAANNNNNGTGG 2 cut(s) 581, 616
CviAII CATG 1 cut(s) 1130
CviQI GTAC 2 cut(s) 238, 324
DdeI CTNAG 3 cut(s) 252, 294, 1172
DpnI GATC 8 cut(s) 207, 243, 292, 624, 682, 1071, 1191, 1354
DpnII GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
EaeI YGGCCR 1 cut(s) 302
Eam1104I CTCTTC 2 cut(s) 80, 91
EarI CTCTTC 2 cut(s) 80, 91
Eco130I CCWWGG 1 cut(s) 835
Eco31I GGTCTC 1 cut(s) 415
Eco32I GATATC 1 cut(s) 748
Eco57I CTGAAG 3 cut(s) 384, 1158, 1301
EcoRI GAATTC 1 cut(s) 179
EcoRII CCWGG 1 cut(s) 340
EcoRV GATATC 1 cut(s) 748
EcoT14I CCWWGG 1 cut(s) 835
ErhI CCWWGG 1 cut(s) 835
FaeI CATG 1 cut(s) 1133
FalI AAGNNNNNCTT 2 cut(s) 1083, 1115
FaqI GGGAC 1 cut(s) 958
FatI CATG 1 cut(s) 1129
FauI CCCGC 1 cut(s) 991
FbaI TGATCA 1 cut(s) 1069
Fnu4HI GCNGC 1 cut(s) 438
FokI GGATG 1 cut(s) 630
Fsp4HI GCNGC 1 cut(s) 438
GlaI GCGC 1 cut(s) 756
GluI GCNGC 1 cut(s) 438
GsaI CCCAGC 1 cut(s) 1233
HaeIII GGCC 1 cut(s) 304
HapII CCGG 1 cut(s) 1055
HgaI GACGC 1 cut(s) 803
HhaI GCGC 1 cut(s) 757
Hin1II CATG 1 cut(s) 1133
Hin6I GCGC 1 cut(s) 755
HinP1I GCGC 1 cut(s) 755
HincII GTYRAC 2 cut(s) 313, 359
HindII GTYRAC 2 cut(s) 313, 359
HindIII AAGCTT 1 cut(s) 1304
HinfI GANTC 5 cut(s) 113, 148, 794, 1268, 1339
HpaII CCGG 1 cut(s) 1055
HphI GGTGA 3 cut(s) 632, 1013, 1174
Hpy166II GTNNAC 4 cut(s) 313, 359, 766, 913
Hpy188III TCNNGA 8 cut(s) 169, 209, 418, 583, 593, 737, 875, 1100
Hpy8I GTNNAC 4 cut(s) 313, 359, 766, 913
Hpy99I CGWCG 1 cut(s) 773
HpyAV CCTTC 6 cut(s) 110, 220, 705, 899, 1020, 1263
HpyCH4III ACNGT 8 cut(s) 61, 365, 653, 882, 931, 1022, 1349, 1376
HpyCH4IV ACGT 2 cut(s) 762, 768
HpyCH4V TGCA 6 cut(s) 437, 562, 665, 766, 920, 1129
HpyF10VI GCNNNNNNNGC 2 cut(s) 763, 1139
HpyF3I CTNAG 3 cut(s) 252, 294, 1172
HpySE526I ACGT 2 cut(s) 762, 768
Hsp92II CATG 1 cut(s) 1133
HspAI GCGC 1 cut(s) 755
Ksp22I TGATCA 1 cut(s) 1069
Kzo9I GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
LmnI GCTCC 2 cut(s) 528, 839
LpnPI CCDG 7 cut(s) 327, 354, 423, 831, 942, 1068, 1215
Lsp1109I GCAGC 1 cut(s) 449
LweI GCATC 1 cut(s) 1021
MaeII ACGT 2 cut(s) 762, 768
MaeIII GTNAC 2 cut(s) 503, 1001
MalI GATC 8 cut(s) 207, 243, 292, 624, 682, 1071, 1191, 1354
MboI GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
MflI RGATCY 2 cut(s) 290, 1352
MhlI GDGCHC 1 cut(s) 768
MlsI TGGCCA 1 cut(s) 304
MluCI AATT 3 cut(s) 38, 179, 274
MluNI TGGCCA 1 cut(s) 304
MlyI GAGTC 1 cut(s) 803
MmeI TCCRAC 1 cut(s) 1243
MnlI CCTC 8 cut(s) 53, 259, 929, 985, 1024, 1169, 1180, 1216
Mox20I TGGCCA 1 cut(s) 304
MroXI GAANNNNTTC 4 cut(s) 715, 970, 1154, 1375
MscI TGGCCA 1 cut(s) 304
MseI TTAA 3 cut(s) 350, 774, 1384
Msp20I TGGCCA 1 cut(s) 304
MspA1I CMGCKG 1 cut(s) 1292
MspI CCGG 1 cut(s) 1055
MspR9I CCNGG 1 cut(s) 342
MvaI CCWGG 1 cut(s) 342
MvnI CGCG 1 cut(s) 998
MwoI GCNNNNNNNGC 2 cut(s) 763, 1139
NdeII GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
NlaIII CATG 1 cut(s) 1133
NmuCI GTSAC 1 cut(s) 1001
NspI RCATGY 1 cut(s) 1133
PaeI GCATGC 1 cut(s) 1133
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 768
PdmI GAANNNNTTC 4 cut(s) 715, 970, 1154, 1375
PfeI GAWTC 4 cut(s) 113, 148, 1268, 1339
PkrI GCNGC 1 cut(s) 439
Ple19I CGATCG 1 cut(s) 208
PleI GAGTC 1 cut(s) 802
PpsI GAGTC 1 cut(s) 802
Ppu21I YACGTR 1 cut(s) 763
PsiI TTATAA 1 cut(s) 1061
Psp6I CCWGG 1 cut(s) 340
PspFI CCCAGC 1 cut(s) 1229
PspGI CCWGG 1 cut(s) 340
PsuI RGATCY 2 cut(s) 290, 1352
PvuI CGATCG 1 cut(s) 208
RsaI GTAC 2 cut(s) 239, 325
RsaNI GTAC 2 cut(s) 238, 324
SaqAI TTAA 3 cut(s) 350, 774, 1384
SatI GCNGC 1 cut(s) 438
Sau3AI GATC 8 cut(s) 205, 241, 290, 622, 680, 1069, 1189, 1352
SchI GAGTC 1 cut(s) 803
ScrFI CCNGG 1 cut(s) 342
SduI GDGCHC 1 cut(s) 768
SfaNI GCATC 1 cut(s) 1021
SfcI CTRYAG 1 cut(s) 847
SmlI CTYRAG 1 cut(s) 737
SmoI CTYRAG 1 cut(s) 737
SphI GCATGC 1 cut(s) 1133
Sse9I AATT 3 cut(s) 38, 179, 274
SsiI CCGC 2 cut(s) 998, 1292
SspI AATATT 1 cut(s) 1168
StyD4I CCNGG 1 cut(s) 340
StyI CCWWGG 1 cut(s) 835
TaaI ACNGT 8 cut(s) 61, 365, 653, 882, 931, 1022, 1349, 1376
TaiI ACGT 2 cut(s) 765, 771
TaqI TCGA 6 cut(s) 192, 208, 518, 977, 1029, 1379
TasI AATT 3 cut(s) 38, 179, 274
TatI WGTACW 1 cut(s) 323
TfiI GAWTC 4 cut(s) 113, 148, 1268, 1339
Tru1I TTAA 3 cut(s) 350, 774, 1384
Tru9I TTAA 3 cut(s) 350, 774, 1384
TscAI CASTG 4 cut(s) 370, 550, 1072, 1199
TseFI GTSAC 1 cut(s) 1001
TseI GCWGC 1 cut(s) 437
Tsp45I GTSAC 1 cut(s) 1001
TspDTI ATGAA 3 cut(s) 67, 477, 1319
TspGWI ACGGA 2 cut(s) 515, 1108
TspRI CASTG 4 cut(s) 370, 550, 1072, 1199
VneI GTGCAC 1 cut(s) 764
XapI RAATTY 2 cut(s) 38, 179
XceI RCATGY 1 cut(s) 1133
XmnI GAANNNNTTC 4 cut(s) 715, 970, 1154, 1375
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.