Rorug06G0440900

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007835
Physical Location & Seq
Forward (+)
57366800 .. 57368164
1365 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0440900.1

Sequence Viewer

Length: 1365 bp
ATGCCTCCAGTTTATGTTCCTATGGTCTTGTTCTATCCTCCTGTTTCACCTCTCAGTACTACTAGAAGTGAAAGATCACAAGCACTAAAACAATCTCTCTCGGAAACCCTGACTCGCTTTTACCCACTAGCTGGTAGAATCAGAGACTACCTTTGCATCGACTGCAACGACGAAGGAGCTTATTACATAGAGGCCGATGTCAAGTCTCATGACCTCTCGGAGTTTCTGCAGCATCCTGACTTGTCAGTACTCCCTAAGCTTCTCCCAACTTTCAACAGTTTGCTTGATTACACTGATCTAATTTCAAATGCCACCACTGGCCTAGAAGGAGAAGGAGGAGCTGATGTAGTCATGATCCAAGTGACTAACTTTGCCTGCGGCGGGTTTGTGATTGGAGTGTTTGTTTCTCATATGATTGTTGATGGCATTGCCATCAGCAATTTTCTTAAAGCTTGGGCTGCAGCCACTGCACAGAGTCTATCAGGTCAGAGTGTTCATGTATTGCCTGATTTTGATGCTGCAACATTGTTCCCTCCTATTCTTGATGAACAAGGTAAGAGCACACACCCAAGAGAAGCAACCATGAGGGGATTGTACAGGCGATTTGCCAAGAGAGGAAGGTGTATTACGAACAGATTTGTGTTTGAGGCCTCAGCTGTGGCCAAACTTAAAGAGCAAGCAGCAACATCATCATTACAAAATCCAAGTCGGGTGGAGGCAGTGTCAGCATTCATCTGGAAATGCGCCACGGCTGCTTGGAAGGCCAAGTCTGGTCAATCTGCACCGAGTTTGATAACCCACGCAGTGAATTTGCGCCGAAGAGCTGAGCCGAATTTTTCCCAAAATTGTATGGGGAATTTTGTTTGTTTGGCAGGTGCAATAGCAAATGATCATCAGAGAGAACAGGAGTTAGAGTTGTCAAGCTTGGTGAGCAAGATGAGGGAAGCAACATCGAAATTCAATGGTGACTTGGTGGCCAAGCTCCAAGGTCAAGATGGGTTAGCCACTATTAGTAAGGTTTTCCAAGACATGGCCGAGGCTATCACACTCTCCACCAATGGGGATGATCAGGTGGAGATGAACTTTATTGGGTATACCAGCATTGCCTACTCTGGAGTGTATGATGCCGATTTCGGCTGGGGAAAGCCTCTGTGGGTCGTTCCAGTTCATGAGCCCTGTCACGAGGCCTTTTCGGTCAATGTGGTTCGTTTGATGGATACAGGAGAATGGGGAAACAATGGTTTTGAAGCTTGGATTTCTCTAGCTGAAGAAGAAATGGCAATGTTGCAAATCAATCAGGACTTGCTTGCTTTTGCTTCTCTCAATCCTAGTCCTCTCAGATTAAGCCAAAATACTGGGTCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

454

Amino Acids

49.73

Weight (kDa)

5.21

Isoelectric Point (pI)

38.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 2 - 434 7.6e-71 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 863
Acc36I ACCTGC 1 cut(s) 863
AccB7I CCANNNNNTGG 2 cut(s) 131, 1030
AccI GTMKAC 1 cut(s) 1094
AciI CCGC 2 cut(s) 378, 381
AclWI GGATC 1 cut(s) 349
AcoI YGGCCR 3 cut(s) 660, 975, 1032
AcsI RAATTY 4 cut(s) 808, 832, 856, 956
AcuI CTGAAG 1 cut(s) 1287
AdeI CACNNNGTG 1 cut(s) 805
AfaI GTAC 3 cut(s) 58, 249, 596
AfiI CCNNNNNNNGG 4 cut(s) 131, 381, 1030, 1059
AgsI TTSAA 4 cut(s) 274, 306, 961, 1247
Alw21I GWGCWC 1 cut(s) 563
Alw26I GTCTC 2 cut(s) 138, 210
AlwI GGATC 1 cut(s) 349
AlwNI CAGNNNCTG 1 cut(s) 467
AoxI GGCC 8 cut(s) 192, 319, 648, 660, 762, 975, 1032, 1185
ApeKI GCWGC 6 cut(s) 229, 458, 461, 518, 680, 752
ApoI RAATTY 4 cut(s) 808, 832, 856, 956
ArsI GACNNNNNNTTYG 2 cut(s) 691, 723
AspLEI GCGC 2 cut(s) 746, 816
AspS9I GGNCC 1 cut(s) 1359
AsuHPI GGTGA 3 cut(s) 39, 940, 977
AvaII GGWCC 1 cut(s) 1359
BalI TGGCCA 2 cut(s) 662, 977
BanII GRGCYC 1 cut(s) 1176
BarI GAAGNNNNNNTAC 2 cut(s) 610, 642
BauI CACGAG 1 cut(s) 1181
Bbv12I GWGCWC 1 cut(s) 563
BbvCI CCTCAGC 1 cut(s) 652
BbvI GCAGC 6 cut(s) 241, 445, 473, 505, 692, 739
BccI CCATC 4 cut(s) 416, 440, 989, 1207
BceAI ACGGC 1 cut(s) 765
BciVI GTATCC 1 cut(s) 1210
BclI TGATCA 2 cut(s) 889, 1066
BcoDI GTCTC 2 cut(s) 138, 210
BfaI CTAG 6 cut(s) 63, 128, 323, 1262, 1329, 1363
BfmI CTRYAG 2 cut(s) 227, 459
BfuAI ACCTGC 1 cut(s) 863
BfuI GTATCC 1 cut(s) 1210
BisI GCNGC 7 cut(s) 230, 379, 459, 462, 519, 681, 753
BlpI GCTNAGC 1 cut(s) 825
BlsI GCNGC 7 cut(s) 231, 380, 460, 463, 520, 682, 754
BmcAI AGTACT 2 cut(s) 58, 249
Bme18I GGWCC 1 cut(s) 1359
BmgT120I GGNCC 1 cut(s) 1359
BmiI GGNNCC 1 cut(s) 1360
BmrI ACTGGG 1 cut(s) 1365
BmsI GCATC 4 cut(s) 165, 241, 505, 1114
BmuI ACTGGG 1 cut(s) 1365
BpmI CTGGAG 1 cut(s) 1134
Bpu10I CCTNAGC 2 cut(s) 255, 652
Bpu1102I GCTNAGC 1 cut(s) 825
BsaJI CCNNGG 3 cut(s) 747, 985, 1035
BsaXI ACNNNNNCTCC 8 cut(s) 330, 360, 387, 417, 707, 737, 899, 929
Bsc4I CCNNNNNNNGG 4 cut(s) 131, 381, 1030, 1059
Bse1I ACTGG 4 cut(s) 8, 322, 1163, 1360
Bse3DI GCAATG 3 cut(s) 426, 1101, 1287
BseDI CCNNGG 3 cut(s) 747, 985, 1035
BseGI GGATG 2 cut(s) 232, 1069
BseLI CCNNNNNNNGG 4 cut(s) 131, 381, 1030, 1059
BseMI GCAATG 3 cut(s) 426, 1101, 1287
BseMII CTCAG 4 cut(s) 67, 666, 816, 1351
BseNI ACTGG 4 cut(s) 8, 322, 1163, 1360
BseRI GAGGAG 1 cut(s) 351
BseXI GCAGC 6 cut(s) 241, 445, 473, 505, 692, 739
BseYI CCCAGC 1 cut(s) 1137
BsgI GTGCAG 2 cut(s) 453, 765
BshFI GGCC 8 cut(s) 194, 321, 650, 662, 764, 977, 1034, 1187
BsiHKAI GWGCWC 1 cut(s) 563
BslI CCNNNNNNNGG 4 cut(s) 131, 381, 1030, 1059
BsmAI GTCTC 2 cut(s) 138, 210
BsmI GAATGC 1 cut(s) 728
BsnI GGCC 8 cut(s) 194, 321, 650, 662, 764, 977, 1034, 1187
Bsp1286I GDGCHC 2 cut(s) 563, 1176
Bsp1407I TGTACA 1 cut(s) 594
Bsp143I GATC 5 cut(s) 74, 295, 354, 889, 1066
Bsp1720I GCTNAGC 1 cut(s) 825
BspACI CCGC 2 cut(s) 378, 381
BspANI GGCC 8 cut(s) 194, 321, 650, 662, 764, 977, 1034, 1187
BspCNI CTCAG 4 cut(s) 66, 665, 817, 1350
BspHI TCATGA 3 cut(s) 208, 351, 1168
BspLI GGNNCC 1 cut(s) 1360
BspMAI CTGCAG 2 cut(s) 231, 463
BspMI ACCTGC 1 cut(s) 863
BspPI GGATC 1 cut(s) 349
BspQI GCTCTTC 1 cut(s) 814
BsrDI GCAATG 3 cut(s) 426, 1101, 1287
BsrGI TGTACA 1 cut(s) 594
BsrI ACTGG 4 cut(s) 8, 322, 1163, 1360
BssECI CCNNGG 3 cut(s) 747, 985, 1035
BssMI GATC 5 cut(s) 74, 295, 354, 889, 1066
BssNAI GTATAC 1 cut(s) 1095
BssSI CACGAG 1 cut(s) 1181
BssT1I CCWWGG 1 cut(s) 985
Bst1107I GTATAC 1 cut(s) 1095
Bst2BI CACGAG 1 cut(s) 1181
Bst4CI ACNGT 1 cut(s) 278
Bst6I CTCTTC 1 cut(s) 814
BstAPI GCANNNNNTGC 2 cut(s) 162, 467
BstAUI TGTACA 1 cut(s) 594
BstC8I GCNNGC 3 cut(s) 376, 678, 1308
BstDEI CTNAG 5 cut(s) 53, 255, 652, 825, 1337
BstDSI CCRYGG 1 cut(s) 747
BstF5I GGATG 2 cut(s) 232, 1069
BstHHI GCGC 2 cut(s) 746, 816
BstKTI GATC 5 cut(s) 77, 298, 357, 892, 1069
BstMAI GTCTC 2 cut(s) 138, 210
BstMBI GATC 5 cut(s) 74, 295, 354, 889, 1066
BstMWI GCNNNNNNNGC 7 cut(s) 162, 458, 467, 725, 752, 761, 930
BstSFI CTRYAG 2 cut(s) 227, 459
BstV1I GCAGC 6 cut(s) 241, 445, 473, 505, 692, 739
BstXI CCANNNNNNTGG 1 cut(s) 1355
BstZ17I GTATAC 1 cut(s) 1095
BsuI GTATCC 1 cut(s) 1210
BsuRI GGCC 8 cut(s) 194, 321, 650, 662, 764, 977, 1034, 1187
BtgI CCRYGG 1 cut(s) 747
BtsCI GGATG 2 cut(s) 232, 1069
BtsI GCAGTG 3 cut(s) 465, 726, 810
BtsIMutI CAGTG 5 cut(s) 291, 315, 465, 726, 810
BveI ACCTGC 1 cut(s) 863
Cac8I GCNNGC 3 cut(s) 376, 678, 1308
CaiI CAGNNNCTG 1 cut(s) 467
CciI TCATGA 3 cut(s) 208, 351, 1168
CfoI GCGC 2 cut(s) 746, 816
Cfr13I GGNCC 1 cut(s) 1359
Csp6I GTAC 3 cut(s) 57, 248, 595
CspCI CAANNNNNGTGG 2 cut(s) 693, 728
CviAII CATG 6 cut(s) 209, 352, 497, 583, 1030, 1169
CviQI GTAC 3 cut(s) 57, 248, 595
DdeI CTNAG 5 cut(s) 53, 255, 652, 825, 1337
DpnI GATC 5 cut(s) 76, 297, 356, 891, 1068
DpnII GATC 5 cut(s) 74, 295, 354, 889, 1066
DraIII CACNNNGTG 1 cut(s) 805
EaeI YGGCCR 3 cut(s) 660, 975, 1032
Eam1104I CTCTTC 1 cut(s) 814
EarI CTCTTC 1 cut(s) 814
Eco130I CCWWGG 1 cut(s) 985
Eco147I AGGCCT 2 cut(s) 650, 1187
Eco24I GRGCYC 1 cut(s) 1176
Eco47I GGWCC 1 cut(s) 1359
Eco57I CTGAAG 1 cut(s) 1287
EcoO109I RGGNCCY 1 cut(s) 1359
EcoT14I CCWWGG 1 cut(s) 985
EcoT38I GRGCYC 1 cut(s) 1176
ErhI CCWWGG 1 cut(s) 985
FaeI CATG 6 cut(s) 212, 355, 500, 586, 1033, 1172
FatI CATG 6 cut(s) 208, 351, 496, 582, 1029, 1168
FauI CCCGC 1 cut(s) 374
FauNDI CATATG 1 cut(s) 411
FbaI TGATCA 2 cut(s) 889, 1066
FblI GTMKAC 1 cut(s) 1094
Fnu4HI GCNGC 7 cut(s) 230, 379, 459, 462, 519, 681, 753
FokI GGATG 2 cut(s) 219, 1076
FriOI GRGCYC 1 cut(s) 1176
Fsp4HI GCNGC 7 cut(s) 230, 379, 459, 462, 519, 681, 753
FspBI CTAG 6 cut(s) 63, 128, 323, 1262, 1329, 1363
GlaI GCGC 2 cut(s) 745, 815
GluI GCNGC 7 cut(s) 230, 379, 459, 462, 519, 681, 753
GsaI CCCAGC 1 cut(s) 1141
GsuI CTGGAG 1 cut(s) 1134
HaeIII GGCC 8 cut(s) 194, 321, 650, 662, 764, 977, 1034, 1187
HhaI GCGC 2 cut(s) 746, 816
Hin1II CATG 6 cut(s) 212, 355, 500, 586, 1033, 1172
Hin6I GCGC 2 cut(s) 744, 814
HinP1I GCGC 2 cut(s) 744, 814
HindIII AAGCTT 4 cut(s) 257, 450, 922, 1248
HinfI GANTC 3 cut(s) 112, 138, 475
HphI GGTGA 3 cut(s) 39, 940, 977
Hpy166II GTNNAC 1 cut(s) 1095
Hpy188I TCNGA 6 cut(s) 103, 143, 220, 489, 897, 1340
Hpy8I GTNNAC 1 cut(s) 1095
Hpy99I CGWCG 1 cut(s) 173
HpyAV CCTTC 5 cut(s) 167, 320, 326, 612, 754
HpyCH4III ACNGT 1 cut(s) 278
HpyCH4V TGCA 9 cut(s) 156, 165, 229, 461, 470, 521, 782, 878, 1288
HpyF10VI GCNNNNNNNGC 7 cut(s) 162, 458, 467, 725, 752, 761, 930
HpyF3I CTNAG 5 cut(s) 53, 255, 652, 825, 1337
Hsp92II CATG 6 cut(s) 212, 355, 500, 586, 1033, 1172
HspAI GCGC 2 cut(s) 744, 814
Ksp22I TGATCA 2 cut(s) 889, 1066
Kzo9I GATC 5 cut(s) 74, 295, 354, 889, 1066
LguI GCTCTTC 1 cut(s) 814
LmnI GCTCC 3 cut(s) 176, 338, 987
Lsp1109I GCAGC 6 cut(s) 241, 445, 473, 505, 692, 739
LweI GCATC 4 cut(s) 165, 241, 505, 1114
MaeI CTAG 6 cut(s) 63, 128, 323, 1262, 1329, 1363
MaeIII GTNAC 3 cut(s) 361, 965, 1178
MalI GATC 5 cut(s) 76, 297, 356, 891, 1068
MboI GATC 5 cut(s) 74, 295, 354, 889, 1066
MboII GAAGA 3 cut(s) 831, 1280, 1283
MhlI GDGCHC 2 cut(s) 563, 1176
MlsI TGGCCA 2 cut(s) 662, 977
MluCI AATT 7 cut(s) 300, 439, 808, 832, 844, 856, 956
MluNI TGGCCA 2 cut(s) 662, 977
MlyI GAGTC 2 cut(s) 106, 484
Mox20I TGGCCA 2 cut(s) 662, 977
MscI TGGCCA 2 cut(s) 662, 977
MseI TTAA 3 cut(s) 447, 669, 1343
Msp20I TGGCCA 2 cut(s) 662, 977
MspA1I CMGCKG 1 cut(s) 656
Mva1269I GAATGC 1 cut(s) 728
MwoI GCNNNNNNNGC 7 cut(s) 162, 458, 467, 725, 752, 761, 930
NdeI CATATG 1 cut(s) 411
NdeII GATC 5 cut(s) 74, 295, 354, 889, 1066
NlaIII CATG 6 cut(s) 212, 355, 500, 586, 1033, 1172
NlaIV GGNNCC 1 cut(s) 1360
NmeAIII GCCGAG 1 cut(s) 1060
NmuCI GTSAC 3 cut(s) 361, 965, 1178
PagI TCATGA 3 cut(s) 208, 351, 1168
PaqCI CACCTGC 1 cut(s) 863
PceI AGGCCT 2 cut(s) 650, 1187
PciSI GCTCTTC 1 cut(s) 814
PcsI WCGNNNNNNNCGW 1 cut(s) 165
PctI GAATGC 1 cut(s) 728
PfeI GAWTC 1 cut(s) 138
PflMI CCANNNNNTGG 2 cut(s) 131, 1030
PkrI GCNGC 7 cut(s) 231, 380, 460, 463, 520, 682, 754
PleI GAGTC 2 cut(s) 106, 483
PpsI GAGTC 2 cut(s) 106, 483
PpuMI RGGWCCY 1 cut(s) 1359
Psp5II RGGWCCY 1 cut(s) 1359
PspFI CCCAGC 1 cut(s) 1137
PspN4I GGNNCC 1 cut(s) 1360
PspPI GGNCC 1 cut(s) 1359
PspPPI RGGWCCY 1 cut(s) 1359
PstI CTGCAG 2 cut(s) 231, 463
PstNI CAGNNNCTG 1 cut(s) 467
PvuII CAGCTG 1 cut(s) 656
RsaI GTAC 3 cut(s) 58, 249, 596
RsaNI GTAC 3 cut(s) 57, 248, 595
SapI GCTCTTC 1 cut(s) 814
SaqAI TTAA 3 cut(s) 447, 669, 1343
SatI GCNGC 7 cut(s) 230, 379, 459, 462, 519, 681, 753
Sau3AI GATC 5 cut(s) 74, 295, 354, 889, 1066
Sau96I GGNCC 1 cut(s) 1359
ScaI AGTACT 2 cut(s) 58, 249
SchI GAGTC 2 cut(s) 106, 484
SduI GDGCHC 2 cut(s) 563, 1176
SfaNI GCATC 4 cut(s) 165, 241, 505, 1114
SfcI CTRYAG 2 cut(s) 227, 459
SinI GGWCC 1 cut(s) 1359
Sse9I AATT 7 cut(s) 300, 439, 808, 832, 844, 856, 956
SseBI AGGCCT 2 cut(s) 650, 1187
SsiI CCGC 2 cut(s) 378, 381
SspMI CTAG 6 cut(s) 63, 128, 323, 1262, 1329, 1363
StuI AGGCCT 2 cut(s) 650, 1187
StyI CCWWGG 1 cut(s) 985
TaaI ACNGT 1 cut(s) 278
TaqI TCGA 2 cut(s) 159, 953
TaqII GACCGA 1 cut(s) 1183
TasI AATT 7 cut(s) 300, 439, 808, 832, 844, 856, 956
TatI WGTACW 3 cut(s) 56, 247, 594
TauI GCSGC 1 cut(s) 381
TfiI GAWTC 1 cut(s) 138
Tru1I TTAA 3 cut(s) 447, 669, 1343
Tru9I TTAA 3 cut(s) 447, 669, 1343
TscAI CASTG 5 cut(s) 298, 322, 472, 726, 810
TseFI GTSAC 3 cut(s) 361, 965, 1178
TseI GCWGC 6 cut(s) 229, 458, 461, 518, 680, 752
Tsp45I GTSAC 3 cut(s) 361, 965, 1178
TspDTI ATGAA 5 cut(s) 485, 561, 721, 1094, 1157
TspRI CASTG 5 cut(s) 298, 322, 472, 726, 810
Van91I CCANNNNNTGG 2 cut(s) 131, 1030
VpaK11BI GGWCC 1 cut(s) 1359
XapI RAATTY 4 cut(s) 808, 832, 856, 956
XcmI CCANNNNNNNNNTGG 1 cut(s) 992
XmiI GTMKAC 1 cut(s) 1094
XspI CTAG 6 cut(s) 63, 128, 323, 1262, 1329, 1363
ZrmI AGTACT 2 cut(s) 58, 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.