Rorug06G0441100

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007835
Physical Location & Seq
Forward (+)
57374045 .. 57374482
438 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0441100.1

Sequence Viewer

Length: 438 bp
ATGGGAAAGTGTGCTTCAAGGAGATTTGTGTTTGATGCCACAGCTATTGCCGCACTTAAGGCCAAAGCAACAGCCAGTAGTGCCTCAAGCTCAAGCGTGCAGAATCCAACTCGTGTAGAGGTTGTTACAGCACTCATCTGGAAATGCATTATGGCTGCGTCTGCCTTCAACACCGAAAATATTGATGGTGGGCAGAGGCAGAAGAGGTTATGTTTGATAACTCACGCAGTCAATTTGCGTCGAAGAGCTGTGCCACCCTTTTCAGAAAACTGTATGGGAAATTTTCTCTTCACAGCTGCAGCTACTTCATGCAGCAGCAACGCTCAAGAGTTAGAACTGGGAAGCTTGGTGATTCGGATTAGGGAAGCAATAAAGAAACTCGATGGCAATGTTGTCCAAAGCCTACAAGGGGGATGGAGGGGTCGCCAAAATGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

145

Amino Acids

15.63

Weight (kDa)

10.16

Isoelectric Point (pI)

55.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 134 7.8e-17 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 51
AcsI RAATTY 1 cut(s) 280
AfiI CCNNNNNNNGG 1 cut(s) 409
AflII CTTAAG 1 cut(s) 56
AgsI TTSAA 2 cut(s) 18, 169
AluBI AGCT 6 cut(s) 44, 90, 248, 296, 302, 345
AluI AGCT 6 cut(s) 44, 90, 248, 296, 302, 345
AoxI GGCC 1 cut(s) 60
ApeKI GCWGC 5 cut(s) 155, 296, 299, 312, 315
ApoI RAATTY 1 cut(s) 280
AsuHPI GGTGA 1 cut(s) 361
BauI CACGAG 1 cut(s) 111
BbvI GCAGC 5 cut(s) 142, 283, 311, 324, 327
BccI CCATC 3 cut(s) 179, 377, 408
BfmI CTRYAG 1 cut(s) 297
BfrI CTTAAG 1 cut(s) 56
BisI GCNGC 6 cut(s) 51, 156, 297, 300, 313, 316
BlsI GCNGC 6 cut(s) 52, 157, 298, 301, 314, 317
BmrI ACTGGG 1 cut(s) 347
BmsI GCATC 1 cut(s) 25
BmuI ACTGGG 1 cut(s) 347
BpuEI CTTGAG 3 cut(s) 70, 76, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 409
Bse1I ACTGG 2 cut(s) 75, 342
Bse3DI GCAATG 1 cut(s) 394
BseGI GGATG 1 cut(s) 419
BseLI CCNNNNNNNGG 1 cut(s) 409
BseMI GCAATG 1 cut(s) 394
BseNI ACTGG 2 cut(s) 75, 342
BseXI GCAGC 5 cut(s) 142, 283, 311, 324, 327
BsgI GTGCAG 1 cut(s) 119
BshFI GGCC 1 cut(s) 62
BslI CCNNNNNNNGG 1 cut(s) 409
BsnI GGCC 1 cut(s) 62
BspACI CCGC 1 cut(s) 51
BspANI GGCC 1 cut(s) 62
BspMAI CTGCAG 1 cut(s) 301
BspQI GCTCTTC 1 cut(s) 238
BspTI CTTAAG 1 cut(s) 56
BsrDI GCAATG 1 cut(s) 394
BsrI ACTGG 2 cut(s) 75, 342
BssSI CACGAG 1 cut(s) 111
Bst2BI CACGAG 1 cut(s) 111
Bst4CI ACNGT 1 cut(s) 272
Bst6I CTCTTC 3 cut(s) 197, 238, 293
BstAFI CTTAAG 1 cut(s) 56
BstC8I GCNNGC 1 cut(s) 98
BstF5I GGATG 1 cut(s) 419
BstMWI GCNNNNNNNGC 4 cut(s) 50, 59, 80, 161
BstSFI CTRYAG 1 cut(s) 297
BstV1I GCAGC 5 cut(s) 142, 283, 311, 324, 327
BsuRI GGCC 1 cut(s) 62
BtsCI GGATG 1 cut(s) 419
Cac8I GCNNGC 1 cut(s) 98
CseI GACGC 2 cut(s) 147, 227
CspCI CAANNNNNGTGG 2 cut(s) 28, 63
CviAII CATG 1 cut(s) 309
Eam1104I CTCTTC 3 cut(s) 197, 238, 293
EarI CTCTTC 3 cut(s) 197, 238, 293
EcoT22I ATGCAT 1 cut(s) 149
FaeI CATG 1 cut(s) 312
FaiI YATR 4 cut(s) 152, 211, 275, 310
FatI CATG 1 cut(s) 308
Fnu4HI GCNGC 6 cut(s) 51, 156, 297, 300, 313, 316
FokI GGATG 1 cut(s) 426
Fsp4HI GCNGC 6 cut(s) 51, 156, 297, 300, 313, 316
GluI GCNGC 6 cut(s) 51, 156, 297, 300, 313, 316
HaeIII GGCC 1 cut(s) 62
HgaI GACGC 2 cut(s) 147, 227
Hin1II CATG 1 cut(s) 312
HindIII AAGCTT 1 cut(s) 343
HinfI GANTC 2 cut(s) 103, 352
HphI GGTGA 1 cut(s) 361
Hpy188I TCNGA 2 cut(s) 265, 357
Hpy188III TCNNGA 2 cut(s) 139, 326
Hpy99I CGWCG 1 cut(s) 243
HpyAV CCTTC 1 cut(s) 175
HpyCH4III ACNGT 1 cut(s) 272
HpyCH4V TGCA 4 cut(s) 100, 147, 299, 312
HpyF10VI GCNNNNNNNGC 4 cut(s) 50, 59, 80, 161
Hsp92II CATG 1 cut(s) 312
LguI GCTCTTC 1 cut(s) 238
LpnPI CCDG 3 cut(s) 88, 124, 323
Lsp1109I GCAGC 5 cut(s) 142, 283, 311, 324, 327
LweI GCATC 1 cut(s) 25
MaeIII GTNAC 1 cut(s) 124
MboII GAAGA 3 cut(s) 214, 255, 280
MluCI AATT 2 cut(s) 232, 280
MmeI TCCRAC 1 cut(s) 131
MnlI CCTC 5 cut(s) 94, 112, 189, 198, 411
Mph1103I ATGCAT 1 cut(s) 149
MseI TTAA 1 cut(s) 57
MspA1I CMGCKG 1 cut(s) 296
MspCI CTTAAG 1 cut(s) 56
MwoI GCNNNNNNNGC 4 cut(s) 50, 59, 80, 161
NlaIII CATG 1 cut(s) 312
NsiI ATGCAT 1 cut(s) 149
PciSI GCTCTTC 1 cut(s) 238
PfeI GAWTC 2 cut(s) 103, 352
PkrI GCNGC 6 cut(s) 52, 157, 298, 301, 314, 317
PstI CTGCAG 1 cut(s) 301
PvuII CAGCTG 1 cut(s) 296
SapI GCTCTTC 1 cut(s) 238
SaqAI TTAA 1 cut(s) 57
SatI GCNGC 6 cut(s) 51, 156, 297, 300, 313, 316
SetI ASST 8 cut(s) 46, 92, 123, 209, 250, 298, 304, 347
SfaNI GCATC 1 cut(s) 25
SfcI CTRYAG 1 cut(s) 297
SmlI CTYRAG 4 cut(s) 56, 85, 91, 324
SmoI CTYRAG 4 cut(s) 56, 85, 91, 324
Sse9I AATT 2 cut(s) 232, 280
SsiI CCGC 1 cut(s) 51
SspI AATATT 1 cut(s) 181
TaaI ACNGT 1 cut(s) 272
TaqI TCGA 2 cut(s) 241, 381
TasI AATT 2 cut(s) 232, 280
TauI GCSGC 1 cut(s) 53
TfiI GAWTC 2 cut(s) 103, 352
Tru1I TTAA 1 cut(s) 57
Tru9I TTAA 1 cut(s) 57
TseI GCWGC 5 cut(s) 155, 296, 299, 312, 315
TspDTI ATGAA 1 cut(s) 297
Vha464I CTTAAG 1 cut(s) 56
XapI RAATTY 1 cut(s) 280
Zsp2I ATGCAT 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.