RchiOBHm_Chr7g0181431

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0007835
Physical Location & Seq
Forward (+)
3098451 .. 3101255
2805 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16181

Sequence Viewer

Length: 1485 bp
ATGTCATCAATGTCAGAAAAGAGTAGGATTCCGTCAAGATTCATTTCCTCCTTGATAACAGTTTCTGTGTTCCTTTTAGTTCTTTCTTCTGTGTTCCTTCTTCAATCTGGCAATACATCTTTCATTCCCAGATCAGTATTTGAGCTTATGCTTGTTAATGGCACATCAGTGTACTTTGAGCCTCATGTGAAAAAGGAACCATTTAAACTTCCTTTCCTCTCTTCTGAGGTTCCCCAAGTTGATGCTATAAAACCCTTAAAAAGAATAAGTGAATCAGCTTGTCAAGTTTCGGATTCGAGTAAGAAAGTGGAATCTGTAGAAAGAAAGAAAATGATGATCTGTGACTCGAAGCAGGCTCGTTTGAGGGTATTTATGTATGAGTTGCCTCCTGAATTTCACTTTGGGTTATTGGGTTGGAAGGGAATGGAGAATCAAACATGGCCACAGCACATCCCACCTTACCCAGGCGGGCTGAATTTACAGCACAGTATAGAATATTGGCTCACCCTTGATCTTTTATCATCAGATAACCTAAATGTGGTCAGACCTTGTACAGTAGTCAGGGTGCACAATTCAAGTGAAGCTGATTTTATTTTTGTGCCATTCTTCTCATCTCTGAGTTACAACCGGCATTCTAAGCTTCATGAGAAGGAGAAAGTCAGTGTCAACAAGAGGTTGCAGGACAAGTTGGTGCAGTTTTTGATGGGCCGGAATGAATGGAAAAGAAAGGGTGGAAAGGATCATTTAATAGTTGCTCATCATCCAAATAGCATGTTGGATGCAAGAAAGAAATTGGGTTCTGCCATGTTCGTGCTTGCAGATTTTGGAAGATATCCTGCTGAAATAGCAAATCTTGGGAAGGATATAATCGCGCCTTACAGACATTTGGTGACGACTGTTCCCAGCAGCAAATCAGCCACATTCAAGGAGCGCCCTATACTAGTGTATTTCCGAGGAGCAATTTACAGAAAAGATGGAGGAGTAATTCGCCAAGAATTGTATCATCTTCTCAAAGACGAGAAAGATGTAGACTTCACTTTTGGTAGCATTGGAGGAAATGGTGTTCGCAAGGCAACCCAAGGAATGGCCTCATCAAAGTTTTGCCTAAATATAGCTGGCGATACCCCATCCTCAAATCGCCTATTCGATGCCATTGCTAGTCATTGTGTTCCAGTAATAATTAGCGATGAGATTGAGCTACCATTTGAAGATGTCTTAGACTACTCACAATTTTGCATATTTGTTCGAGGGGCTGATGCTGTAAAGAAGGGTTACCTACTGAAACTTCTTCGAGGAATAAACAAAGACAAGTGGACCAAAATGTGGGAAAGGTTGAAGGAAGTTGTACATCATTTCGAATATCAATATCCCTCCCTGCCTGATGATGCTGTTGATATGATTTGGCAGGCAGTTTCTCGCAAGATATCCTCTCTACAATTTAAATATCACAGGAAGAAGAGATACGACAGGTCTCAACTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

494

Amino Acids

56.57

Weight (kDa)

9.45

Isoelectric Point (pI)

43.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Exostosin_GT47 PF03016 118 - 427 7.7e-61 Exostosin GT47 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 1084, 1323
AccI GTMKAC 1 cut(s) 1029
AccII CGCG 1 cut(s) 872
AciI CCGC 1 cut(s) 468
AclWI GGATC 1 cut(s) 747
AcoI YGGCCR 1 cut(s) 440
AcsI RAATTY 2 cut(s) 392, 475
AfaI GTAC 3 cut(s) 173, 553, 1347
AfiI CCNNNNNNNGG 4 cut(s) 464, 538, 1084, 1323
AgsI TTSAA 5 cut(s) 104, 576, 925, 1208, 1336
AhlI ACTAGT 1 cut(s) 940
AjnI CCWGG 1 cut(s) 463
AjuI GAANNNNNNNTTGG 2 cut(s) 384, 416
AleI CACNNNNGTG 1 cut(s) 167
AloI GAACNNNNNNTCC 2 cut(s) 1047, 1079
AluBI AGCT 6 cut(s) 145, 278, 584, 640, 1115, 1198
AluI AGCT 6 cut(s) 145, 278, 584, 640, 1115, 1198
Alw21I GWGCWC 1 cut(s) 570
Alw26I GTCTC 1 cut(s) 1476
Alw44I GTGCAC 1 cut(s) 566
AlwI GGATC 1 cut(s) 747
AlwNI CAGNNNCTG 1 cut(s) 65
AoxI GGCC 3 cut(s) 440, 706, 1086
ApaLI GTGCAC 1 cut(s) 566
ApeKI GCWGC 1 cut(s) 906
ApoI RAATTY 2 cut(s) 392, 475
ArsI GACNNNNNNTTYG 2 cut(s) 1022, 1054
AspLEI GCGC 2 cut(s) 874, 933
AspS9I GGNCC 2 cut(s) 706, 1314
AsuHPI GGTGA 2 cut(s) 496, 901
AsuII TTCGAA 1 cut(s) 1356
AvaII GGWCC 1 cut(s) 1314
BaeGI GKGCMC 1 cut(s) 570
BalI TGGCCA 1 cut(s) 442
BarI GAAGNNNNNNTAC 2 cut(s) 1445, 1477
Bbv12I GWGCWC 1 cut(s) 570
BbvI GCAGC 1 cut(s) 918
BccI CCATC 3 cut(s) 697, 968, 1135
BcgI CGANNNNNNTGC 2 cut(s) 1136, 1170
BciT130I CCWGG 1 cut(s) 465
BcoDI GTCTC 1 cut(s) 1476
BcuI ACTAGT 1 cut(s) 940
BfaI CTAG 2 cut(s) 941, 1158
BfmI CTRYAG 1 cut(s) 315
BfoI RGCGCY 1 cut(s) 934
BisI GCNGC 1 cut(s) 907
BlsI GCNGC 1 cut(s) 908
Bme1390I CCNGG 1 cut(s) 465
Bme18I GGWCC 1 cut(s) 1314
BmgT120I GGNCC 2 cut(s) 706, 1314
BmiI GGNNCC 2 cut(s) 198, 231
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 5 cut(s) 232, 769, 1138, 1246, 1375
Bpu14I TTCGAA 1 cut(s) 1356
BsaI GGTCTC 1 cut(s) 1476
BsaJI CCNNGG 3 cut(s) 463, 952, 1078
Bsc4I CCNNNNNNNGG 4 cut(s) 464, 538, 1084, 1323
Bse118I RCCGGY 1 cut(s) 627
Bse1I ACTGG 1 cut(s) 1172
Bse3DI GCAATG 1 cut(s) 1152
BseBI CCWGG 1 cut(s) 465
BseDI CCNNGG 3 cut(s) 463, 952, 1078
BseGI GGATG 4 cut(s) 450, 760, 784, 1127
BseLI CCNNNNNNNGG 4 cut(s) 464, 538, 1084, 1323
BseMI GCAATG 1 cut(s) 1152
BseMII CTCAG 2 cut(s) 216, 608
BseNI ACTGG 1 cut(s) 1172
BseRI GAGGAG 2 cut(s) 969, 993
BseSI GKGCMC 1 cut(s) 570
BseXI GCAGC 1 cut(s) 918
BseYI CCCAGC 1 cut(s) 902
BsgI GTGCAG 1 cut(s) 713
Bsh1236I CGCG 1 cut(s) 872
BshFI GGCC 3 cut(s) 442, 708, 1088
BsiHKAI GWGCWC 1 cut(s) 570
BsiSI CCGG 2 cut(s) 628, 709
BslI CCNNNNNNNGG 4 cut(s) 464, 538, 1084, 1323
BsmAI GTCTC 1 cut(s) 1476
BsmI GAATGC 1 cut(s) 631
BsnI GGCC 3 cut(s) 442, 708, 1088
Bso31I GGTCTC 1 cut(s) 1476
Bsp119I TTCGAA 1 cut(s) 1356
Bsp1286I GDGCHC 1 cut(s) 570
Bsp1407I TGTACA 2 cut(s) 551, 1345
Bsp143I GATC 4 cut(s) 131, 336, 511, 739
BspACI CCGC 1 cut(s) 468
BspANI GGCC 3 cut(s) 442, 708, 1088
BspCNI CTCAG 2 cut(s) 217, 609
BspFNI CGCG 1 cut(s) 872
BspHI TCATGA 1 cut(s) 643
BspLI GGNNCC 2 cut(s) 198, 231
BspPI GGATC 1 cut(s) 747
BspT104I TTCGAA 1 cut(s) 1356
BspTNI GGTCTC 1 cut(s) 1476
BsrDI GCAATG 1 cut(s) 1152
BsrFI RCCGGY 1 cut(s) 627
BsrGI TGTACA 2 cut(s) 551, 1345
BsrI ACTGG 1 cut(s) 1172
BssAI RCCGGY 1 cut(s) 627
BssECI CCNNGG 3 cut(s) 463, 952, 1078
BssMI GATC 4 cut(s) 131, 336, 511, 739
BssT1I CCWWGG 1 cut(s) 1078
Bst2UI CCWGG 1 cut(s) 465
Bst4CI ACNGT 4 cut(s) 61, 488, 556, 898
Bst6I CTCTTC 2 cut(s) 226, 1451
BstAUI TGTACA 2 cut(s) 551, 1345
BstBI TTCGAA 1 cut(s) 1356
BstC8I GCNNGC 5 cut(s) 354, 470, 816, 1117, 1407
BstDEI CTNAG 4 cut(s) 225, 617, 636, 1216
BstEII GGTNACC 1 cut(s) 1271
BstENI CCTNNNNNAGG 1 cut(s) 462
BstF5I GGATG 4 cut(s) 450, 760, 784, 1127
BstFNI CGCG 1 cut(s) 872
BstH2I RGCGCY 1 cut(s) 934
BstHHI GCGC 2 cut(s) 874, 933
BstKTI GATC 4 cut(s) 134, 339, 514, 742
BstMAI GTCTC 1 cut(s) 1476
BstMBI GATC 4 cut(s) 131, 336, 511, 739
BstMWI GCNNNNNNNGC 2 cut(s) 637, 845
BstNI CCWGG 1 cut(s) 465
BstNSI RCATGY 1 cut(s) 775
BstPI GGTNACC 1 cut(s) 1271
BstSCI CCNGG 1 cut(s) 463
BstSFI CTRYAG 1 cut(s) 315
BstSLI GKGCMC 1 cut(s) 570
BstUI CGCG 1 cut(s) 872
BstV1I GCAGC 1 cut(s) 918
BsuRI GGCC 3 cut(s) 442, 708, 1088
BtgZI GCGATG 1 cut(s) 1200
BtsCI GGATG 4 cut(s) 450, 760, 784, 1127
BtsIMutI CAGTG 2 cut(s) 174, 667
Cac8I GCNNGC 5 cut(s) 354, 470, 816, 1117, 1407
CaiI CAGNNNCTG 1 cut(s) 65
CciI TCATGA 1 cut(s) 643
CfoI GCGC 2 cut(s) 874, 933
Cfr10I RCCGGY 1 cut(s) 627
Cfr13I GGNCC 2 cut(s) 706, 1314
Csp6I GTAC 3 cut(s) 172, 552, 1346
CviAII CATG 5 cut(s) 185, 438, 644, 772, 805
CviQI GTAC 3 cut(s) 172, 552, 1346
DdeI CTNAG 4 cut(s) 225, 617, 636, 1216
DpnI GATC 4 cut(s) 133, 338, 513, 741
DpnII GATC 4 cut(s) 131, 336, 511, 739
DraI TTTAAA 2 cut(s) 205, 1441
EaeI YGGCCR 1 cut(s) 440
Eam1104I CTCTTC 2 cut(s) 226, 1451
EarI CTCTTC 2 cut(s) 226, 1451
Eco130I CCWWGG 1 cut(s) 1078
Eco31I GGTCTC 1 cut(s) 1476
Eco32I GATATC 2 cut(s) 833, 1425
Eco47I GGWCC 1 cut(s) 1314
Eco91I GGTNACC 1 cut(s) 1271
EcoNI CCTNNNNNAGG 1 cut(s) 462
EcoO65I GGTNACC 1 cut(s) 1271
EcoRII CCWGG 1 cut(s) 463
EcoRV GATATC 2 cut(s) 833, 1425
EcoT14I CCWWGG 1 cut(s) 1078
ErhI CCWWGG 1 cut(s) 1078
FaeI CATG 5 cut(s) 188, 441, 647, 775, 808
FatI CATG 5 cut(s) 184, 437, 643, 771, 804
FauI CCCGC 1 cut(s) 461
FblI GTMKAC 1 cut(s) 1029
Fnu4HI GCNGC 1 cut(s) 907
FokI GGATG 4 cut(s) 437, 747, 791, 1114
Fsp4HI GCNGC 1 cut(s) 907
FspBI CTAG 2 cut(s) 941, 1158
GlaI GCGC 2 cut(s) 873, 932
GluI GCNGC 1 cut(s) 907
GsaI CCCAGC 1 cut(s) 906
HaeII RGCGCY 1 cut(s) 934
HaeIII GGCC 3 cut(s) 442, 708, 1088
HapII CCGG 2 cut(s) 628, 709
HhaI GCGC 2 cut(s) 874, 933
Hin1II CATG 5 cut(s) 188, 441, 647, 775, 808
Hin6I GCGC 2 cut(s) 872, 931
HinP1I GCGC 2 cut(s) 872, 931
HincII GTYRAC 1 cut(s) 667
HindII GTYRAC 1 cut(s) 667
HindIII AAGCTT 1 cut(s) 638
HinfI GANTC 7 cut(s) 28, 39, 272, 293, 311, 344, 430
HpaII CCGG 2 cut(s) 628, 709
HphI GGTGA 2 cut(s) 496, 901
Hpy166II GTNNAC 5 cut(s) 172, 568, 667, 1030, 1314
Hpy188I TCNGA 7 cut(s) 16, 226, 292, 526, 545, 618, 953
Hpy188III TCNNGA 3 cut(s) 36, 389, 644
Hpy8I GTNNAC 5 cut(s) 172, 568, 667, 1030, 1314
HpyAV CCTTC 6 cut(s) 107, 412, 643, 853, 1261, 1330
HpyCH4III ACNGT 4 cut(s) 61, 488, 556, 898
HpyCH4V TGCA 6 cut(s) 568, 679, 694, 782, 818, 1236
HpyF10VI GCNNNNNNNGC 2 cut(s) 637, 845
HpyF3I CTNAG 4 cut(s) 225, 617, 636, 1216
Hsp92II CATG 5 cut(s) 188, 441, 647, 775, 808
HspAI GCGC 2 cut(s) 872, 931
Kzo9I GATC 4 cut(s) 131, 336, 511, 739
LmnI GCTCC 2 cut(s) 928, 956
Lsp1109I GCAGC 1 cut(s) 918
LweI GCATC 5 cut(s) 232, 769, 1138, 1246, 1375
MaeI CTAG 2 cut(s) 941, 1158
MaeIII GTNAC 4 cut(s) 341, 620, 889, 1271
MalI GATC 4 cut(s) 133, 338, 513, 741
MboI GATC 4 cut(s) 131, 336, 511, 739
MhlI GDGCHC 1 cut(s) 570
MlsI TGGCCA 1 cut(s) 442
MluNI TGGCCA 1 cut(s) 442
MlyI GAGTC 1 cut(s) 338
MmeI TCCRAC 2 cut(s) 395, 756
Mox20I TGGCCA 1 cut(s) 442
MscI TGGCCA 1 cut(s) 442
MseI TTAA 6 cut(s) 156, 204, 257, 746, 1440, 1483
MslI CAYNNNNRTG 2 cut(s) 167, 809
Msp20I TGGCCA 1 cut(s) 442
MspI CCGG 2 cut(s) 628, 709
MspR9I CCNGG 1 cut(s) 465
Mva1269I GAATGC 1 cut(s) 631
MvaI CCWGG 1 cut(s) 465
MvnI CGCG 1 cut(s) 872
MwoI GCNNNNNNNGC 2 cut(s) 637, 845
NdeII GATC 4 cut(s) 131, 336, 511, 739
NlaIII CATG 5 cut(s) 188, 441, 647, 775, 808
NlaIV GGNNCC 2 cut(s) 198, 231
NmuCI GTSAC 2 cut(s) 341, 889
NspI RCATGY 1 cut(s) 775
NspV TTCGAA 1 cut(s) 1356
OliI CACNNNNGTG 1 cut(s) 167
PagI TCATGA 1 cut(s) 643
PctI GAATGC 1 cut(s) 631
PfeI GAWTC 6 cut(s) 28, 39, 272, 293, 311, 430
PflMI CCANNNNNTGG 2 cut(s) 1084, 1323
PkrI GCNGC 1 cut(s) 908
PleI GAGTC 1 cut(s) 338
PpsI GAGTC 1 cut(s) 338
Psp6I CCWGG 1 cut(s) 463
PspEI GGTNACC 1 cut(s) 1271
PspFI CCCAGC 1 cut(s) 902
PspGI CCWGG 1 cut(s) 463
PspN4I GGNNCC 2 cut(s) 198, 231
PspPI GGNCC 2 cut(s) 706, 1314
PstNI CAGNNNCTG 1 cut(s) 65
RsaI GTAC 3 cut(s) 173, 553, 1347
RsaNI GTAC 3 cut(s) 172, 552, 1346
RseI CAYNNNNRTG 2 cut(s) 167, 809
SaqAI TTAA 6 cut(s) 156, 204, 257, 746, 1440, 1483
SatI GCNGC 1 cut(s) 907
Sau3AI GATC 4 cut(s) 131, 336, 511, 739
Sau96I GGNCC 2 cut(s) 706, 1314
SchI GAGTC 1 cut(s) 338
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 570
SfaNI GCATC 5 cut(s) 232, 769, 1138, 1246, 1375
SfcI CTRYAG 1 cut(s) 315
SfuI TTCGAA 1 cut(s) 1356
SinI GGWCC 1 cut(s) 1314
SmiI ATTTAAAT 1 cut(s) 1441
SmiMI CAYNNNNRTG 2 cut(s) 167, 809
SpeI ACTAGT 1 cut(s) 940
SsiI CCGC 1 cut(s) 468
SspI AATATT 1 cut(s) 497
SspMI CTAG 2 cut(s) 941, 1158
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 1 cut(s) 1078
SwaI ATTTAAAT 1 cut(s) 1441
TaaI ACNGT 4 cut(s) 61, 488, 556, 898
TaqI TCGA 6 cut(s) 296, 347, 1146, 1246, 1291, 1356
TatI WGTACW 3 cut(s) 171, 551, 1345
TfiI GAWTC 6 cut(s) 28, 39, 272, 293, 311, 430
Tru1I TTAA 6 cut(s) 156, 204, 257, 746, 1440, 1483
Tru9I TTAA 6 cut(s) 156, 204, 257, 746, 1440, 1483
TscAI CASTG 2 cut(s) 174, 667
TseFI GTSAC 2 cut(s) 341, 889
TseI GCWGC 1 cut(s) 906
Tsp45I GTSAC 2 cut(s) 341, 889
TspDTI ATGAA 4 cut(s) 31, 112, 632, 729
TspGWI ACGGA 1 cut(s) 21
TspRI CASTG 2 cut(s) 174, 667
Van91I CCANNNNNTGG 2 cut(s) 1084, 1323
VneI GTGCAC 1 cut(s) 566
VpaK11BI GGWCC 1 cut(s) 1314
XagI CCTNNNNNAGG 1 cut(s) 462
XapI RAATTY 2 cut(s) 392, 475
XceI RCATGY 1 cut(s) 775
XmiI GTMKAC 1 cut(s) 1029
XspI CTAG 2 cut(s) 941, 1158
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.