Rorug06G0441000

Exostosin family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0007835
Physical Location & Seq
Forward (+)
57373373 .. 57374029
657 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0441000.1

Sequence Viewer

Length: 657 bp
ATGACGAACACGGTCGTGAAAATTATCTCGAAAGAGTGCATCAAACCCTCTTCCCCAACACCTCAGCACCTGAGAACCCACAAGCTCTCCCTCTTGGACCAGTTCGTTCCTTCCATTTATGTACCCATGATCCTCTTCTATCCCATCCACCCAAACCCAACAGCTTCTGCTAATTCTGGTAATACTTGCCAAAGGTCAAAACTGCTAAAGCAATCGCTTTCAGAAACCTTGACTAGCTTCTACCCACTTGCCGGAAGAATTAGAGACAATCTCTCTATTGATTGCAATGACGAGGGGGCTAGTTACACAGAGGCAGAAGTCGAGTCCATAAATCTCTCCGAGTTCCTCAACCATCCTGATGTCACATTGCTCGGTCAGTTCCTTCCATCCGGTGCTAGTTTCACTGAATCAGCAGGTCCAGGAGCTCACTTAGCTATGATCCAAGTCACCAACTTTGCATGCGGTGGTTTTGCTGTTGGTGTCTTGGTTTCACATATGGTTGTTGATGGAACTGCATTGAGCACTTTTCTTAAAGCTTGGGCTGCAAGGTTTCGTAAGGCTCCTGAATCTGATATATGTAAGCCTAGTTTTGATGCCTCATCTGTGTTTCCTCAAAGTGATGCATTCCCAAGAGAAGCAACTATTATGGCTTTATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Exostosin

Protein Analysis

218

Amino Acids

23.58

Weight (kDa)

6.05

Isoelectric Point (pI)

38.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 6 - 208 1.2e-49 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 404
AciI CCGC 1 cut(s) 462
AclWI GGATC 2 cut(s) 124, 433
AfaI GTAC 1 cut(s) 123
AfiI CCNNNNNNNGG 1 cut(s) 251
AjnI CCWGG 1 cut(s) 418
AleI CACNNNNGTG 1 cut(s) 14
AluBI AGCT 6 cut(s) 85, 164, 237, 425, 434, 536
AluI AGCT 6 cut(s) 85, 164, 237, 425, 434, 536
Alw21I GWGCWC 2 cut(s) 427, 524
Alw26I GTCTC 1 cut(s) 258
AlwI GGATC 2 cut(s) 124, 433
AlwNI CAGNNNCTG 2 cut(s) 70, 167
ApeKI GCWGC 1 cut(s) 542
AspS9I GGNCC 2 cut(s) 97, 416
AsuHPI GGTGA 1 cut(s) 439
AvaII GGWCC 2 cut(s) 97, 416
BanII GRGCYC 1 cut(s) 427
Bbv12I GWGCWC 2 cut(s) 427, 524
BbvCI CCTCAGC 1 cut(s) 63
BbvI GCAGC 1 cut(s) 529
BccI CCATC 4 cut(s) 152, 360, 394, 500
BciT130I CCWGG 1 cut(s) 420
BcoDI GTCTC 1 cut(s) 258
BfaI CTAG 4 cut(s) 234, 300, 396, 585
BfuAI ACCTGC 1 cut(s) 404
BisI GCNGC 1 cut(s) 543
BlsI GCNGC 1 cut(s) 544
Bme1390I CCNGG 1 cut(s) 420
Bme18I GGWCC 2 cut(s) 97, 416
BmgT120I GGNCC 2 cut(s) 97, 416
BmiI GGNNCC 1 cut(s) 561
BmrFI CCNGG 1 cut(s) 420
BmsI GCATC 3 cut(s) 48, 583, 610
BplI GAGNNNNNCTC 2 cut(s) 255, 287
Bpu10I CCTNAGC 1 cut(s) 63
BsaWI WCCGGW 1 cut(s) 389
BsaXI ACNNNNNCTCC 2 cut(s) 71, 101
Bsc4I CCNNNNNNNGG 1 cut(s) 251
Bse1I ACTGG 1 cut(s) 100
Bse3DI GCAATG 2 cut(s) 292, 365
BseBI CCWGG 1 cut(s) 420
BseGI GGATG 3 cut(s) 144, 352, 386
BseLI CCNNNNNNNGG 1 cut(s) 251
BseMI GCAATG 2 cut(s) 292, 365
BseMII CTCAG 2 cut(s) 62, 77
BseNI ACTGG 1 cut(s) 100
BseXI GCAGC 1 cut(s) 529
Bsh1285I CGRYCG 1 cut(s) 15
BsiEI CGRYCG 1 cut(s) 15
BsiHKAI GWGCWC 2 cut(s) 427, 524
BsiSI CCGG 2 cut(s) 252, 390
BslI CCNNNNNNNGG 1 cut(s) 251
BsmAI GTCTC 1 cut(s) 258
BsmI GAATGC 1 cut(s) 623
Bsp1286I GDGCHC 2 cut(s) 427, 524
Bsp143I GATC 2 cut(s) 129, 438
BspACI CCGC 1 cut(s) 462
BspCNI CTCAG 2 cut(s) 63, 76
BspLI GGNNCC 1 cut(s) 561
BspMI ACCTGC 1 cut(s) 404
BspPI GGATC 2 cut(s) 124, 433
BsrDI GCAATG 2 cut(s) 292, 365
BsrI ACTGG 1 cut(s) 100
BssMI GATC 2 cut(s) 129, 438
Bst2UI CCWGG 1 cut(s) 420
Bst4CI ACNGT 1 cut(s) 13
Bst6I CTCTTC 2 cut(s) 55, 140
BstC8I GCNNGC 1 cut(s) 460
BstDEI CTNAG 3 cut(s) 63, 71, 430
BstF5I GGATG 3 cut(s) 144, 352, 386
BstKTI GATC 2 cut(s) 132, 441
BstMAI GTCTC 1 cut(s) 258
BstMBI GATC 2 cut(s) 129, 438
BstMCI CGRYCG 1 cut(s) 15
BstMWI GCNNNNNNNGC 2 cut(s) 431, 542
BstNI CCWGG 1 cut(s) 420
BstNSI RCATGY 1 cut(s) 462
BstSCI CCNGG 1 cut(s) 418
BstV1I GCAGC 1 cut(s) 529
BtsCI GGATG 3 cut(s) 144, 352, 386
BtsIMutI CAGTG 1 cut(s) 402
BveI ACCTGC 1 cut(s) 404
Cac8I GCNNGC 1 cut(s) 460
CaiI CAGNNNCTG 2 cut(s) 70, 167
Cfr13I GGNCC 2 cut(s) 97, 416
Csp6I GTAC 1 cut(s) 122
CviAII CATG 2 cut(s) 127, 459
CviQI GTAC 1 cut(s) 122
DdeI CTNAG 3 cut(s) 63, 71, 430
DpnI GATC 2 cut(s) 131, 440
DpnII GATC 2 cut(s) 129, 438
Eam1104I CTCTTC 2 cut(s) 55, 140
EarI CTCTTC 2 cut(s) 55, 140
Ecl136II GAGCTC 1 cut(s) 425
Eco24I GRGCYC 1 cut(s) 427
Eco47I GGWCC 2 cut(s) 97, 416
Eco53kI GAGCTC 1 cut(s) 425
EcoICRI GAGCTC 1 cut(s) 425
EcoRII CCWGG 1 cut(s) 418
EcoT22I ATGCAT 1 cut(s) 625
EcoT38I GRGCYC 1 cut(s) 427
FaeI CATG 2 cut(s) 130, 462
FatI CATG 2 cut(s) 126, 458
FauNDI CATATG 1 cut(s) 495
Fnu4HI GCNGC 1 cut(s) 543
FokI GGATG 3 cut(s) 131, 339, 373
FriOI GRGCYC 1 cut(s) 427
Fsp4HI GCNGC 1 cut(s) 543
FspBI CTAG 4 cut(s) 234, 300, 396, 585
GluI GCNGC 1 cut(s) 543
HapII CCGG 2 cut(s) 252, 390
Hin1II CATG 2 cut(s) 130, 462
HindIII AAGCTT 1 cut(s) 534
HinfI GANTC 3 cut(s) 323, 407, 566
HpaII CCGG 2 cut(s) 252, 390
HphI GGTGA 1 cut(s) 439
Hpy188I TCNGA 3 cut(s) 223, 340, 571
Hpy188III TCNNGA 4 cut(s) 16, 28, 356, 563
HpyAV CCTTC 2 cut(s) 120, 392
HpyCH4III ACNGT 1 cut(s) 13
HpyCH4V TGCA 6 cut(s) 39, 285, 458, 515, 545, 623
HpyF10VI GCNNNNNNNGC 2 cut(s) 431, 542
HpyF3I CTNAG 3 cut(s) 63, 71, 430
Hsp92II CATG 2 cut(s) 130, 462
Kzo9I GATC 2 cut(s) 129, 438
LmnI GCTCC 2 cut(s) 422, 565
Lsp1109I GCAGC 1 cut(s) 529
LweI GCATC 3 cut(s) 48, 583, 610
MaeI CTAG 4 cut(s) 234, 300, 396, 585
MaeIII GTNAC 3 cut(s) 302, 361, 445
MalI GATC 2 cut(s) 131, 440
MboI GATC 2 cut(s) 129, 438
MboII GAAGA 3 cut(s) 42, 127, 267
MhlI GDGCHC 2 cut(s) 427, 524
MluCI AATT 3 cut(s) 21, 172, 258
MlyI GAGTC 1 cut(s) 332
MnlI CCTC 9 cut(s) 58, 72, 101, 143, 286, 304, 356, 607, 621
Mph1103I ATGCAT 1 cut(s) 625
MseI TTAA 1 cut(s) 531
MslI CAYNNNNRTG 2 cut(s) 14, 357
MspI CCGG 2 cut(s) 252, 390
MspR9I CCNGG 1 cut(s) 420
Mva1269I GAATGC 1 cut(s) 623
MvaI CCWGG 1 cut(s) 420
MwoI GCNNNNNNNGC 2 cut(s) 431, 542
NdeI CATATG 1 cut(s) 495
NdeII GATC 2 cut(s) 129, 438
NlaIII CATG 2 cut(s) 130, 462
NlaIV GGNNCC 1 cut(s) 561
NmuCI GTSAC 2 cut(s) 361, 445
NsiI ATGCAT 1 cut(s) 625
NspI RCATGY 1 cut(s) 462
OliI CACNNNNGTG 1 cut(s) 14
PaeI GCATGC 1 cut(s) 462
PctI GAATGC 1 cut(s) 623
PfeI GAWTC 2 cut(s) 407, 566
PfoI TCCNGGA 1 cut(s) 418
PkrI GCNGC 1 cut(s) 544
PleI GAGTC 1 cut(s) 331
PpsI GAGTC 1 cut(s) 331
Psp124BI GAGCTC 1 cut(s) 427
Psp6I CCWGG 1 cut(s) 418
PspGI CCWGG 1 cut(s) 418
PspN4I GGNNCC 1 cut(s) 561
PspPI GGNCC 2 cut(s) 97, 416
PstNI CAGNNNCTG 2 cut(s) 70, 167
RsaI GTAC 1 cut(s) 123
RsaNI GTAC 1 cut(s) 122
RseI CAYNNNNRTG 2 cut(s) 14, 357
SacI GAGCTC 1 cut(s) 427
SaqAI TTAA 1 cut(s) 531
SatI GCNGC 1 cut(s) 543
Sau3AI GATC 2 cut(s) 129, 438
Sau96I GGNCC 2 cut(s) 97, 416
SchI GAGTC 1 cut(s) 332
ScrFI CCNGG 1 cut(s) 420
SduI GDGCHC 2 cut(s) 427, 524
SfaNI GCATC 3 cut(s) 48, 583, 610
SinI GGWCC 2 cut(s) 97, 416
SmiMI CAYNNNNRTG 2 cut(s) 14, 357
SphI GCATGC 1 cut(s) 462
Sse9I AATT 3 cut(s) 21, 172, 258
SsiI CCGC 1 cut(s) 462
SspMI CTAG 4 cut(s) 234, 300, 396, 585
SstI GAGCTC 1 cut(s) 427
StyD4I CCNGG 1 cut(s) 418
TaaI ACNGT 1 cut(s) 13
TaqI TCGA 2 cut(s) 29, 321
TaqII GACCGA 1 cut(s) 362
TasI AATT 3 cut(s) 21, 172, 258
TfiI GAWTC 2 cut(s) 407, 566
Tru1I TTAA 1 cut(s) 531
Tru9I TTAA 1 cut(s) 531
TscAI CASTG 1 cut(s) 409
TseFI GTSAC 2 cut(s) 361, 445
TseI GCWGC 1 cut(s) 542
Tsp45I GTSAC 2 cut(s) 361, 445
TspRI CASTG 1 cut(s) 409
VpaK11BI GGWCC 2 cut(s) 97, 416
XceI RCATGY 1 cut(s) 462
XspI CTAG 4 cut(s) 234, 300, 396, 585
Zsp2I ATGCAT 1 cut(s) 625
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.