Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002060.1

Orthogroup ID

OG0007835

Physical Location & Seq

Genomic Coordinates Forward (+)

72877 .. 73881

Gene Structure 1005 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002060.1_g000019.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1005 bp

atgtcatcaatgtcagaaaagagtaggattccgtcaagattcatttcctccttgataacagtttctgtgttccttttagttctttcttctgtgttccttcttcaatctggcaatacatctttcattcccagatcagtatttgagcttatgcttgttaatggcacatcagtgtactttgagcctcatgtgaaaaaggaaccatttaaacttcctttcctctcttctgaggttccccaagttgatgctataaaacccttaaaaagaataagtgaatcagcttgtcaagtttccgattcgggcaagaaagtgggatctgtagaaagaaagaaaatgatgatctgtgactcgaagcaggctcgtttgagggtatttatgtatgagttgcctcctgaatttcactttgggttattgggttggaagggaatggagaatcaaacatggccaccgcacatcccaccttacccaggcgggctgaatttacagcacagtatagaatattggctcacccttgatcttttatcatcagataacctaaatgtggtcagaccttgtacagtagtcagggtgcacaattcaagtgaagctgattttatttttgtgccattcttctcatctctgagttacaaccggcattctaagcttcataagaaggagaaagtcagtgtcaacaagaggttgcaggacaagttggtgcagtttttgatgggccggaatgaatggaaaagaaagggtggaaaggatcatttaatagttgctcatcatccaaatagcatgttggatgcaagaaagaaattgggttctgccatgttcgtgcttgcagattttggaagatatcctgctgaaatagcaaatcttgggaaggatataatcgcgccttacagacatttggtgacgactgttcccagcagcaaatcagccacattcaaggagcgccctatactagtgtatttccgaggagcaatttacagaaaagatgtcagtttttccttccttcatctcttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Exostosin

Protein Analysis

334

Amino Acids

38.06

Weight (kDa)

9.82

Isoelectric Point (pI)

45.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007835)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74680
fragaria_vesca	FvH4_5g14940 FvH4_5g14940 FvH4_5g14940
malus_domestica	MD06G1193300.v1.1 MD14G1200400.v1.1
prunus_persica	Prupe.5G193500_v2.0.a1
pyrus_communis	pycom06g17140 pycom14g16610
rosa_chinensis	RchiOBHm_Chr7g0181431
rosa_laevigata	RLG00000005194
rosa_multiflora	Rmu_sc0002060.1_g000019 Rmu_sc0004621.1_g000020
rosa_roxburghii	Rroxscaffold_3G00272010
rosa_rugosa	Rorug06G0440700 Rorug06G0440800 Rorug06G0440900 Rorug06G0441000 Rorug06G0441100
rosa_samantha	Rh7AG042900 Rh7BG042400 Rh7CG044200 Rh7DG042800
rosa_wichuraiana	Rw7G003580

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	872
AciI	CCGC	2 cut(s)	446, 468
AclWI	GGATC	2 cut(s)	319, 747
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	2 cut(s)	392, 475
AfaI	GTAC	2 cut(s)	173, 553
AfiI	CCNNNNNNNGG	2 cut(s)	464, 538
AgsI	TTSAA	3 cut(s)	104, 576, 925
AhlI	ACTAGT	1 cut(s)	940
AjnI	CCWGG	1 cut(s)	463
AjuI	GAANNNNNNNTTGG	2 cut(s)	384, 416
AleI	CACNNNNGTG	1 cut(s)	167
AluBI	AGCT	4 cut(s)	145, 278, 584, 640
AluI	AGCT	4 cut(s)	145, 278, 584, 640
Alw21I	GWGCWC	1 cut(s)	570
Alw44I	GTGCAC	1 cut(s)	566
AlwI	GGATC	2 cut(s)	319, 747
AlwNI	CAGNNNCTG	1 cut(s)	65
AoxI	GGCC	2 cut(s)	440, 706
ApaLI	GTGCAC	1 cut(s)	566
ApeKI	GCWGC	1 cut(s)	906
ApoI	RAATTY	2 cut(s)	392, 475
AspLEI	GCGC	2 cut(s)	874, 933
AspS9I	GGNCC	1 cut(s)	706
AsuHPI	GGTGA	2 cut(s)	496, 901
BaeGI	GKGCMC	1 cut(s)	570
BalI	TGGCCA	1 cut(s)	442
Bbv12I	GWGCWC	1 cut(s)	570
BbvI	GCAGC	1 cut(s)	918
BccI	CCATC	1 cut(s)	697
BciT130I	CCWGG	1 cut(s)	465
BcuI	ACTAGT	1 cut(s)	940
BfaI	CTAG	1 cut(s)	941
BfmI	CTRYAG	1 cut(s)	315
BfoI	RGCGCY	1 cut(s)	934
BisI	GCNGC	1 cut(s)	907
BlsI	GCNGC	1 cut(s)	908
Bme1390I	CCNGG	1 cut(s)	465
BmgT120I	GGNCC	1 cut(s)	706
BmiI	GGNNCC	2 cut(s)	198, 231
BmrFI	CCNGG	1 cut(s)	465
BmsI	GCATC	2 cut(s)	232, 769
BsaJI	CCNNGG	2 cut(s)	463, 952
Bsc4I	CCNNNNNNNGG	2 cut(s)	464, 538
Bse118I	RCCGGY	1 cut(s)	627
BseBI	CCWGG	1 cut(s)	465
BseDI	CCNNGG	2 cut(s)	463, 952
BseGI	GGATG	3 cut(s)	450, 760, 784
BseLI	CCNNNNNNNGG	2 cut(s)	464, 538
BseMII	CTCAG	2 cut(s)	216, 608
BseRI	GAGGAG	1 cut(s)	969
BseSI	GKGCMC	1 cut(s)	570
BseXI	GCAGC	1 cut(s)	918
BseYI	CCCAGC	1 cut(s)	902
BsgI	GTGCAG	1 cut(s)	713
Bsh1236I	CGCG	1 cut(s)	872
BshFI	GGCC	2 cut(s)	442, 708
BsiHKAI	GWGCWC	1 cut(s)	570
BsiSI	CCGG	2 cut(s)	628, 709
BslI	CCNNNNNNNGG	2 cut(s)	464, 538
BsmI	GAATGC	1 cut(s)	631
BsnI	GGCC	2 cut(s)	442, 708
Bsp1286I	GDGCHC	1 cut(s)	570
Bsp1407I	TGTACA	1 cut(s)	551
Bsp143I	GATC	5 cut(s)	131, 311, 336, 511, 739
BspACI	CCGC	2 cut(s)	446, 468
BspANI	GGCC	2 cut(s)	442, 708
BspCNI	CTCAG	2 cut(s)	217, 609
BspFNI	CGCG	1 cut(s)	872
BspLI	GGNNCC	2 cut(s)	198, 231
BspPI	GGATC	2 cut(s)	319, 747
BsrFI	RCCGGY	1 cut(s)	627
BsrGI	TGTACA	1 cut(s)	551
BssAI	RCCGGY	1 cut(s)	627
BssECI	CCNNGG	2 cut(s)	463, 952
BssMI	GATC	5 cut(s)	131, 311, 336, 511, 739
Bst2UI	CCWGG	1 cut(s)	465
Bst4CI	ACNGT	4 cut(s)	61, 488, 556, 898
Bst6I	CTCTTC	1 cut(s)	226
BstAUI	TGTACA	1 cut(s)	551
BstC8I	GCNNGC	3 cut(s)	354, 470, 816
BstDEI	CTNAG	3 cut(s)	225, 617, 636
BstENI	CCTNNNNNAGG	1 cut(s)	462
BstF5I	GGATG	3 cut(s)	450, 760, 784
BstFNI	CGCG	1 cut(s)	872
BstH2I	RGCGCY	1 cut(s)	934
BstHHI	GCGC	2 cut(s)	874, 933
BstKTI	GATC	5 cut(s)	134, 314, 339, 514, 742
BstMBI	GATC	5 cut(s)	131, 311, 336, 511, 739
BstMWI	GCNNNNNNNGC	2 cut(s)	637, 845
BstNI	CCWGG	1 cut(s)	465
BstNSI	RCATGY	1 cut(s)	775
BstSCI	CCNGG	1 cut(s)	463
BstSFI	CTRYAG	1 cut(s)	315
BstSLI	GKGCMC	1 cut(s)	570
BstUI	CGCG	1 cut(s)	872
BstV1I	GCAGC	1 cut(s)	918
BstX2I	RGATCY	1 cut(s)	311
BstYI	RGATCY	1 cut(s)	311
BsuRI	GGCC	2 cut(s)	442, 708
BtsCI	GGATG	3 cut(s)	450, 760, 784
BtsIMutI	CAGTG	2 cut(s)	174, 667
Cac8I	GCNNGC	3 cut(s)	354, 470, 816
CaiI	CAGNNNCTG	1 cut(s)	65
CfoI	GCGC	2 cut(s)	874, 933
Cfr10I	RCCGGY	1 cut(s)	627
Cfr13I	GGNCC	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	172, 552
CviAII	CATG	4 cut(s)	185, 438, 772, 805
CviQI	GTAC	2 cut(s)	172, 552
DdeI	CTNAG	3 cut(s)	225, 617, 636
DpnI	GATC	5 cut(s)	133, 313, 338, 513, 741
DpnII	GATC	5 cut(s)	131, 311, 336, 511, 739
DraI	TTTAAA	1 cut(s)	205
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	226
EarI	CTCTTC	1 cut(s)	226
Eco32I	GATATC	1 cut(s)	833
EcoNI	CCTNNNNNAGG	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	463
EcoRV	GATATC	1 cut(s)	833
FaeI	CATG	4 cut(s)	188, 441, 775, 808
FatI	CATG	4 cut(s)	184, 437, 771, 804
FauI	CCCGC	1 cut(s)	461
Fnu4HI	GCNGC	1 cut(s)	907
FokI	GGATG	3 cut(s)	437, 747, 791
Fsp4HI	GCNGC	1 cut(s)	907
FspBI	CTAG	1 cut(s)	941
GlaI	GCGC	2 cut(s)	873, 932
GluI	GCNGC	1 cut(s)	907
GsaI	CCCAGC	1 cut(s)	906
HaeII	RGCGCY	1 cut(s)	934
HaeIII	GGCC	2 cut(s)	442, 708
HapII	CCGG	2 cut(s)	628, 709
HhaI	GCGC	2 cut(s)	874, 933
Hin1II	CATG	4 cut(s)	188, 441, 775, 808
Hin6I	GCGC	2 cut(s)	872, 931
HinP1I	GCGC	2 cut(s)	872, 931
HincII	GTYRAC	1 cut(s)	667
HindII	GTYRAC	1 cut(s)	667
HindIII	AAGCTT	1 cut(s)	638
HinfI	GANTC	6 cut(s)	28, 39, 272, 293, 344, 430
HpaII	CCGG	2 cut(s)	628, 709
HphI	GGTGA	2 cut(s)	496, 901
Hpy166II	GTNNAC	3 cut(s)	172, 568, 667
Hpy188I	TCNGA	7 cut(s)	16, 226, 292, 526, 545, 618, 953
Hpy188III	TCNNGA	2 cut(s)	36, 389
Hpy8I	GTNNAC	3 cut(s)	172, 568, 667
HpyAV	CCTTC	6 cut(s)	107, 412, 643, 853, 997, 1001
HpyCH4III	ACNGT	4 cut(s)	61, 488, 556, 898
HpyCH4V	TGCA	5 cut(s)	568, 679, 694, 782, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	637, 845
HpyF3I	CTNAG	3 cut(s)	225, 617, 636
Hsp92II	CATG	4 cut(s)	188, 441, 775, 808
HspAI	GCGC	2 cut(s)	872, 931
Kzo9I	GATC	5 cut(s)	131, 311, 336, 511, 739
LmnI	GCTCC	2 cut(s)	928, 956
Lsp1109I	GCAGC	1 cut(s)	918
LweI	GCATC	2 cut(s)	232, 769
MaeI	CTAG	1 cut(s)	941
MaeIII	GTNAC	3 cut(s)	341, 620, 889
MalI	GATC	5 cut(s)	133, 313, 338, 513, 741
MboI	GATC	5 cut(s)	131, 311, 336, 511, 739
MboII	GAAGA	5 cut(s)	78, 92, 213, 598, 840
MflI	RGATCY	1 cut(s)	311
MhlI	GDGCHC	1 cut(s)	570
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	5 cut(s)	392, 475, 571, 791, 960
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	338
MmeI	TCCRAC	2 cut(s)	395, 756
MnlI	CCTC	8 cut(s)	58, 192, 220, 227, 357, 396, 666, 947
Mox20I	TGGCCA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	4 cut(s)	156, 204, 257, 746
MslI	CAYNNNNRTG	2 cut(s)	167, 809
Msp20I	TGGCCA	1 cut(s)	442
MspI	CCGG	2 cut(s)	628, 709
MspR9I	CCNGG	1 cut(s)	465
Mva1269I	GAATGC	1 cut(s)	631
MvaI	CCWGG	1 cut(s)	465
MvnI	CGCG	1 cut(s)	872
MwoI	GCNNNNNNNGC	2 cut(s)	637, 845
NdeII	GATC	5 cut(s)	131, 311, 336, 511, 739
NlaIII	CATG	4 cut(s)	188, 441, 775, 808
NlaIV	GGNNCC	2 cut(s)	198, 231
NmuCI	GTSAC	2 cut(s)	341, 889
NspI	RCATGY	1 cut(s)	775
OliI	CACNNNNGTG	1 cut(s)	167
PctI	GAATGC	1 cut(s)	631
PfeI	GAWTC	5 cut(s)	28, 39, 272, 293, 430
PkrI	GCNGC	1 cut(s)	908
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
Psp6I	CCWGG	1 cut(s)	463
PspFI	CCCAGC	1 cut(s)	902
PspGI	CCWGG	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	198, 231
PspPI	GGNCC	1 cut(s)	706
PstNI	CAGNNNCTG	1 cut(s)	65
PsuI	RGATCY	1 cut(s)	311
RsaI	GTAC	2 cut(s)	173, 553
RsaNI	GTAC	2 cut(s)	172, 552
RseI	CAYNNNNRTG	2 cut(s)	167, 809
SaqAI	TTAA	4 cut(s)	156, 204, 257, 746
SatI	GCNGC	1 cut(s)	907
Sau3AI	GATC	5 cut(s)	131, 311, 336, 511, 739
Sau96I	GGNCC	1 cut(s)	706
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	1 cut(s)	465
SduI	GDGCHC	1 cut(s)	570
SetI	ASST	9 cut(s)	147, 231, 280, 460, 534, 550, 586, 642, 677
SfaNI	GCATC	2 cut(s)	232, 769
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	167, 809
SpeI	ACTAGT	1 cut(s)	940
Sse9I	AATT	5 cut(s)	392, 475, 571, 791, 960
SsiI	CCGC	2 cut(s)	446, 468
SspI	AATATT	1 cut(s)	497
SspMI	CTAG	1 cut(s)	941
StyD4I	CCNGG	1 cut(s)	463
TaaI	ACNGT	4 cut(s)	61, 488, 556, 898
TaqI	TCGA	1 cut(s)	347
TasI	AATT	5 cut(s)	392, 475, 571, 791, 960
TatI	WGTACW	2 cut(s)	171, 551
TfiI	GAWTC	5 cut(s)	28, 39, 272, 293, 430
Tru1I	TTAA	4 cut(s)	156, 204, 257, 746
Tru9I	TTAA	4 cut(s)	156, 204, 257, 746
TscAI	CASTG	2 cut(s)	174, 667
TseFI	GTSAC	2 cut(s)	341, 889
TseI	GCWGC	1 cut(s)	906
Tsp45I	GTSAC	2 cut(s)	341, 889
TspDTI	ATGAA	5 cut(s)	31, 112, 632, 729, 983
TspGWI	ACGGA	1 cut(s)	21
TspRI	CASTG	2 cut(s)	174, 667
VneI	GTGCAC	1 cut(s)	566
XagI	CCTNNNNNAGG	1 cut(s)	462
XapI	RAATTY	2 cut(s)	392, 475
XceI	RCATGY	1 cut(s)	775
XspI	CTAG	1 cut(s)	941

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.