Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017190

Physical Location & Seq

Genomic Coordinates Reverse (-)

28159715 .. 28160510

Gene Structure 796 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G74990.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 414 bp

ATGGCTATTAACACCATCACGAACGAAGAAGATGATGCATCAAACAACTTTGGATGCAATATCTGTCTTGAATTGGCAAGAGAACCGATCGTGACTCTATGTGGTCATTTGTTCTGTTGGCCTTGTCTCTACAAGTGGCTCCATTACCATTCTAAATCAAATCATTGTCCTGTTTGTAAAGCTTTGGTTAAGGAAGATACTTTGGTTCCTTTGTATGGAATGGGTAAGCCATCTTCTGATCCGAGATCGAAACTCAATAGTGGTGTTACTGTCCCTAATCGACCAGCTGCGACTAGGACTGAAACAGCTCGACCTCGTCTTGAACAAAGACATCATGGGTCTAGTTTCTTTGGTGGGCATTCAAGTTTTGCTGCCATGCCAACTGGTTTACGGTTTTCAAATTTCTTGTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005783 GO:0005789 GO:0006464 GO:0006508 GO:0006511 GO:0006515 GO:0006807 GO:0006928 GO:0006950 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009987 GO:0010033 GO:0010243 GO:0010498 GO:0012505 GO:0016020 GO:0016477 GO:0016567 GO:0016740 GO:0018996 GO:0019538 GO:0019787 GO:0019899 GO:0019941 GO:0030054 GO:0030154 GO:0030163 GO:0031984 GO:0032446 GO:0032501 GO:0032502 GO:0032991 GO:0033554 GO:0034976 GO:0035966 GO:0035967 GO:0036211 GO:0036503 GO:0036513 GO:0040011 GO:0040039 GO:0042175 GO:0042221 GO:0042303 GO:0042692 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043292 GO:0043412 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044390 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044449 GO:0044464 GO:0048468 GO:0048856 GO:0048869 GO:0048870 GO:0050896 GO:0051146 GO:0051179 GO:0051603 GO:0051674 GO:0051716 GO:0051788 GO:0055001 GO:0055002 GO:0055120 GO:0061061 GO:0061630 GO:0061659 GO:0070647 GO:0070887 GO:0071218 GO:0071310 GO:0071704 GO:0071712 GO:0098796 GO:0098827 GO:0099080 GO:0099081 GO:0099512 GO:0140096 GO:1901564 GO:1901565 GO:1901575 GO:1901698

KEGG Pathways

Metabolic & Signaling

ko04141 map04141

Pfam Domains

Protein Families

zf-C3HC4 zf-C3HC4_3

Protein Analysis

137

Amino Acids

15.23

Weight (kDa)

8.52

Isoelectric Point (pI)

46.07

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
zf-C3HC4_3	PF13920	18 - 64	1.5e-07	Zinc finger, C3HC4 type (RING finger)
zf-RING_UBOX	PF13445	19 - 57	1.8e-09	RING-type zinc-finger
zf-C3HC4	PF00097	19 - 59	2.9e-09	Zinc finger, C3HC4 type (RING finger)
zf-RING_2	PF13639	19 - 60	9.2e-09	Ring finger domain
zf-C3HC4_2	PF13923	19 - 59	1.9e-08	Zinc finger, C3HC4 type (RING finger)
zf-RING_5	PF14634	19 - 60	2.5e-07	zinc-RING finger domain
zf-C3HC4_4	PF15227	19 - 59	2.6e-06	zinc finger of C3HC4-type, RING

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0017190)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G74990
fragaria_vesca	FvH4_4g34391
malus_domestica	MD02G1215900.v1.1
prunus_persica	Prupe.8G036400_v2.0.a1
pyrus_communis	pycom07g09040
rosa_chinensis	RchiOBHm_Chr4g0443821
rosa_laevigata	RLG00000005885
rosa_roxburghii	Rroxscaffold_5G00384390
rosa_rugosa	Rorug04G0347600
rosa_samantha	Rh4AG407800 Rh4BG418800 Rh4CG432900 Rh4DG414000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	233
AcsI	RAATTY	1 cut(s)	400
AfiI	CCNNNNNNNGG	1 cut(s)	215
AgsI	TTSAA	4 cut(s)	71, 323, 363, 399
AluBI	AGCT	3 cut(s)	182, 287, 308
AluI	AGCT	3 cut(s)	182, 287, 308
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	1 cut(s)	233
AoxI	GGCC	1 cut(s)	119
ApeKI	GCWGC	2 cut(s)	287, 371
ApoI	RAATTY	1 cut(s)	400
BaeI	ACNNNNGTAYC	2 cut(s)	189, 222
BarI	GAAGNNNNNNTAC	2 cut(s)	217, 249
BbvI	GCAGC	2 cut(s)	274, 358
BccI	CCATC	2 cut(s)	23, 238
BcoDI	GTCTC	1 cut(s)	131
BfaI	CTAG	2 cut(s)	294, 342
BisI	GCNGC	2 cut(s)	288, 372
BlsI	GCNGC	2 cut(s)	289, 373
BmiI	GGNNCC	2 cut(s)	140, 207
BmsI	GCATC	3 cut(s)	25, 44, 47
Bsc4I	CCNNNNNNNGG	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	388
BseGI	GGATG	1 cut(s)	59
BseLI	CCNNNNNNNGG	1 cut(s)	215
BseNI	ACTGG	1 cut(s)	388
BseXI	GCAGC	2 cut(s)	274, 358
Bsh1285I	CGRYCG	1 cut(s)	90
BshFI	GGCC	1 cut(s)	121
BsiEI	CGRYCG	1 cut(s)	90
BslFI	GGGAC	1 cut(s)	257
BslI	CCNNNNNNNGG	1 cut(s)	215
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	257
BsmI	GAATGC	1 cut(s)	358
BsnI	GGCC	1 cut(s)	121
Bsp143I	GATC	3 cut(s)	87, 238, 245
BspANI	GGCC	1 cut(s)	121
BspLI	GGNNCC	2 cut(s)	140, 207
BspPI	GGATC	1 cut(s)	233
BsrI	ACTGG	1 cut(s)	388
BssMI	GATC	3 cut(s)	87, 238, 245
Bst4CI	ACNGT	2 cut(s)	271, 393
BstF5I	GGATG	1 cut(s)	59
BstKTI	GATC	3 cut(s)	90, 241, 248
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	3 cut(s)	87, 238, 245
BstMCI	CGRYCG	1 cut(s)	90
BstV1I	GCAGC	2 cut(s)	274, 358
BsuRI	GGCC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	59
CviAII	CATG	2 cut(s)	335, 376
CviJI	RGCY	7 cut(s)	5, 121, 139, 182, 229, 287, 308
CviKI_1	RGCY	7 cut(s)	5, 121, 139, 182, 229, 287, 308
DpnI	GATC	3 cut(s)	89, 240, 247
DpnII	GATC	3 cut(s)	87, 238, 245
EcoT22I	ATGCAT	1 cut(s)	40
FaeI	CATG	2 cut(s)	338, 379
FaiI	YATR	4 cut(s)	100, 216, 336, 377
FaqI	GGGAC	1 cut(s)	257
FatI	CATG	2 cut(s)	334, 375
Fnu4HI	GCNGC	2 cut(s)	288, 372
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	2 cut(s)	288, 372
FspBI	CTAG	2 cut(s)	294, 342
GluI	GCNGC	2 cut(s)	288, 372
HaeIII	GGCC	1 cut(s)	121
Hin1II	CATG	2 cut(s)	338, 379
HindIII	AAGCTT	1 cut(s)	180
HinfI	GANTC	1 cut(s)	94
Hpy166II	GTNNAC	1 cut(s)	389
Hpy188I	TCNGA	2 cut(s)	238, 243
Hpy188III	TCNNGA	4 cut(s)	19, 68, 91, 320
Hpy8I	GTNNAC	1 cut(s)	389
HpyCH4III	ACNGT	2 cut(s)	271, 393
HpyCH4V	TGCA	2 cut(s)	38, 57
Hsp92II	CATG	2 cut(s)	338, 379
Kzo9I	GATC	3 cut(s)	87, 238, 245
LmnI	GCTCC	1 cut(s)	144
LpnPI	CCDG	3 cut(s)	183, 297, 369
Lsp1109I	GCAGC	2 cut(s)	274, 358
LweI	GCATC	3 cut(s)	25, 44, 47
MaeI	CTAG	2 cut(s)	294, 342
MaeIII	GTNAC	2 cut(s)	91, 265
MalI	GATC	3 cut(s)	89, 240, 247
MboI	GATC	3 cut(s)	87, 238, 245
MboII	GAAGA	4 cut(s)	38, 41, 206, 225
MluCI	AATT	2 cut(s)	71, 400
MlyI	GAGTC	1 cut(s)	88
MnlI	CCTC	1 cut(s)	324
Mph1103I	ATGCAT	1 cut(s)	40
MseI	TTAA	2 cut(s)	9, 189
MspA1I	CMGCKG	1 cut(s)	287
Mva1269I	GAATGC	1 cut(s)	358
NdeII	GATC	3 cut(s)	87, 238, 245
NlaIII	CATG	2 cut(s)	338, 379
NlaIV	GGNNCC	2 cut(s)	140, 207
NmuCI	GTSAC	1 cut(s)	91
NsiI	ATGCAT	1 cut(s)	40
PctI	GAATGC	1 cut(s)	358
PflFI	GACNNNGTC	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	289, 373
Ple19I	CGATCG	1 cut(s)	90
PleI	GAGTC	1 cut(s)	88
PpsI	GAGTC	1 cut(s)	88
PspN4I	GGNNCC	2 cut(s)	140, 207
PsyI	GACNNNGTC	1 cut(s)	315
PvuI	CGATCG	1 cut(s)	90
PvuII	CAGCTG	1 cut(s)	287
SaqAI	TTAA	2 cut(s)	9, 189
SatI	GCNGC	2 cut(s)	288, 372
Sau3AI	GATC	3 cut(s)	87, 238, 245
SchI	GAGTC	1 cut(s)	88
SetI	ASST	4 cut(s)	184, 289, 310, 316
SfaNI	GCATC	3 cut(s)	25, 44, 47
Sse9I	AATT	2 cut(s)	71, 400
SspMI	CTAG	2 cut(s)	294, 342
TaaI	ACNGT	2 cut(s)	271, 393
TaqI	TCGA	3 cut(s)	248, 280, 310
TasI	AATT	2 cut(s)	71, 400
Tru1I	TTAA	2 cut(s)	9, 189
Tru9I	TTAA	2 cut(s)	9, 189
TseFI	GTSAC	1 cut(s)	91
TseI	GCWGC	2 cut(s)	287, 371
Tsp45I	GTSAC	1 cut(s)	91
Tth111I	GACNNNGTC	1 cut(s)	315
XapI	RAATTY	1 cut(s)	400
XspI	CTAG	2 cut(s)	294, 342
Zsp2I	ATGCAT	1 cut(s)	40

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.