pycom07g09040

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0017190
Physical Location & Seq
Forward (+)
8227174 .. 8227989
816 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g09040.2

Sequence Viewer

Length: 630 bp
ATGATTGCGAAAGCTCTCAACTTGACAGATGATGACTGTAAACCTGAATACCATGAAGTTATTTATCCAGAACCAGAAGAAAACGATTACGGAGAACCTTACTTTCCAGAACCAGAACAAGAATATGATTACTTTTATGGTTCTCAAGTCAAGCCTTTCCATAGTCGTTGTAATGCTGATGATGCCTCTGCTTCGGTCATTCAATCTGTGCTTCATCCTCTTCTCATGACAGTGAACTTGAACATAAGACTTATGATGACAAAACCTGCAGAGTATTTCGACTGCAAGCTGTGTGTGAAGATGGCTAGAGAGCCGGTGGTGACTCAATGTGGTCATTTGTTTTGTGGGGATTGTTTGAACAAGTGGTTGTACTTGCCTTGCTGTTGTTCCCCTCCCAAGGGCAGGTTCTTACGCGTTACTCACCTATCCGCCTCCGTCCCTCGGGACCAACAAGGGGTAGTACAGGAATATTCACCTGTTGTCCATCGACTACGCAGCCCTAACTCACCTTCACTTCTGAGATGCAGTGCCTTATTTGTAGGAACAAGGTGCTTGATGACTCCATCATTCAGATTAGCCCGCCACTGCGGTGGCAACAGAGGCCTTGAAATTATTGGAAATTTAAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Prok-RING_4 zf-C3HC4 zf-C3HC4_3 zf-RING_5

Protein Analysis

210

Amino Acids

23.74

Weight (kDa)

6.64

Isoelectric Point (pI)

55.67

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74990
fragaria_vesca FvH4_4g34391
malus_domestica MD02G1215900.v1.1
prunus_persica Prupe.8G036400_v2.0.a1
pyrus_communis pycom07g09040
rosa_chinensis RchiOBHm_Chr4g0443821
rosa_laevigata RLG00000005885
rosa_roxburghii Rroxscaffold_5G00384390
rosa_rugosa Rorug04G0347600
rosa_samantha Rh4AG407800 Rh4BG418800 Rh4CG432900 Rh4DG414000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 2 cut(s) 274, 393
AccII CGCG 1 cut(s) 414
AciI CCGC 3 cut(s) 429, 580, 588
AcsI RAATTY 1 cut(s) 619
AfaI GTAC 2 cut(s) 371, 462
AfiI CCNNNNNNNGG 5 cut(s) 397, 398, 402, 441, 454
AflIII ACRYGT 1 cut(s) 412
AgsI TTSAA 4 cut(s) 203, 241, 358, 608
AjuI GAANNNNNNNTTGG 2 cut(s) 389, 421
AleI CACNNNNGTG 1 cut(s) 588
AluBI AGCT 2 cut(s) 14, 289
AluI AGCT 2 cut(s) 14, 289
Ama87I CYCGRG 1 cut(s) 441
AoxI GGCC 1 cut(s) 601
ApeKI GCWGC 1 cut(s) 495
ApoI RAATTY 1 cut(s) 619
AspS9I GGNCC 1 cut(s) 445
AsuHPI GGTGA 4 cut(s) 331, 413, 465, 498
AvaI CYCGRG 1 cut(s) 441
AvaII GGWCC 1 cut(s) 445
BbvI GCAGC 1 cut(s) 507
BccI CCATC 3 cut(s) 295, 492, 571
BfaI CTAG 1 cut(s) 306
BfmI CTRYAG 1 cut(s) 267
BfuAI ACCTGC 2 cut(s) 274, 393
BisI GCNGC 1 cut(s) 496
BlsI GCNGC 1 cut(s) 497
Bme18I GGWCC 1 cut(s) 445
BmeT110I CYCGRG 1 cut(s) 441
BmgT120I GGNCC 1 cut(s) 445
BmiI GGNNCC 1 cut(s) 446
BmsI GCATC 2 cut(s) 172, 512
BpuEI CTTGAG 1 cut(s) 129
BsaJI CCNNGG 2 cut(s) 396, 440
Bsc4I CCNNNNNNNGG 5 cut(s) 397, 398, 402, 441, 454
Bse118I RCCGGY 1 cut(s) 313
BseDI CCNNGG 2 cut(s) 396, 440
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 5 cut(s) 397, 398, 402, 441, 454
BseMII CTCAG 1 cut(s) 509
BseXI GCAGC 1 cut(s) 507
Bsh1236I CGCG 1 cut(s) 414
BshFI GGCC 1 cut(s) 603
BsiHKCI CYCGRG 1 cut(s) 441
BsiSI CCGG 1 cut(s) 314
BslFI GGGAC 2 cut(s) 422, 458
BslI CCNNNNNNNGG 5 cut(s) 397, 398, 402, 441, 454
BsmFI GGGAC 2 cut(s) 422, 458
BsnI GGCC 1 cut(s) 603
BsoBI CYCGRG 1 cut(s) 441
BspACI CCGC 3 cut(s) 429, 580, 588
BspANI GGCC 1 cut(s) 603
BspCNI CTCAG 1 cut(s) 510
BspFNI CGCG 1 cut(s) 414
BspHI TCATGA 1 cut(s) 225
BspLI GGNNCC 1 cut(s) 446
BspMAI CTGCAG 1 cut(s) 271
BspMI ACCTGC 2 cut(s) 274, 393
BsrFI RCCGGY 1 cut(s) 313
BssAI RCCGGY 1 cut(s) 313
BssECI CCNNGG 2 cut(s) 396, 440
BssT1I CCWWGG 1 cut(s) 396
Bst4CI ACNGT 2 cut(s) 38, 232
Bst6I CTCTTC 1 cut(s) 225
BstC8I GCNNGC 2 cut(s) 287, 580
BstDEI CTNAG 1 cut(s) 518
BstF5I GGATG 1 cut(s) 214
BstFNI CGCG 1 cut(s) 414
BstMWI GCNNNNNNNGC 2 cut(s) 182, 600
BstSFI CTRYAG 1 cut(s) 267
BstUI CGCG 1 cut(s) 414
BstV1I GCAGC 1 cut(s) 507
BstXI CCANNNNNNTGG 1 cut(s) 590
BsuRI GGCC 1 cut(s) 603
BtsCI GGATG 1 cut(s) 214
BtsI GCAGTG 2 cut(s) 532, 583
BtsIMutI CAGTG 3 cut(s) 237, 532, 583
BveI ACCTGC 2 cut(s) 274, 393
Cac8I GCNNGC 2 cut(s) 287, 580
CciI TCATGA 1 cut(s) 225
Cfr10I RCCGGY 1 cut(s) 313
Cfr13I GGNCC 1 cut(s) 445
Csp6I GTAC 2 cut(s) 370, 461
CviAII CATG 2 cut(s) 53, 226
CviJI RGCY 8 cut(s) 14, 154, 289, 305, 313, 498, 578, 603
CviKI_1 RGCY 8 cut(s) 14, 154, 289, 305, 313, 498, 578, 603
CviQI GTAC 2 cut(s) 370, 461
DdeI CTNAG 1 cut(s) 518
Eam1104I CTCTTC 1 cut(s) 225
EarI CTCTTC 1 cut(s) 225
EciI GGCGGA 1 cut(s) 418
Eco130I CCWWGG 1 cut(s) 396
Eco147I AGGCCT 1 cut(s) 603
Eco47I GGWCC 1 cut(s) 445
Eco88I CYCGRG 1 cut(s) 441
EcoT14I CCWWGG 1 cut(s) 396
ErhI CCWWGG 1 cut(s) 396
FaeI CATG 2 cut(s) 56, 229
FaiI YATR 7 cut(s) 54, 126, 138, 162, 227, 245, 254
FaqI GGGAC 2 cut(s) 422, 458
FatI CATG 2 cut(s) 52, 225
FauI CCCGC 1 cut(s) 587
Fnu4HI GCNGC 1 cut(s) 496
FokI GGATG 1 cut(s) 201
Fsp4HI GCNGC 1 cut(s) 496
FspBI CTAG 1 cut(s) 306
GluI GCNGC 1 cut(s) 496
HaeIII GGCC 1 cut(s) 603
HapII CCGG 1 cut(s) 314
Hin1II CATG 2 cut(s) 56, 229
HinfI GANTC 2 cut(s) 322, 559
HpaII CCGG 1 cut(s) 314
HphI GGTGA 4 cut(s) 331, 413, 465, 498
Hpy166II GTNNAC 2 cut(s) 41, 235
Hpy188I TCNGA 2 cut(s) 519, 572
Hpy188III TCNNGA 4 cut(s) 68, 107, 226, 443
Hpy8I GTNNAC 2 cut(s) 41, 235
HpyAV CCTTC 1 cut(s) 519
HpyCH4III ACNGT 2 cut(s) 38, 232
HpyCH4V TGCA 3 cut(s) 269, 285, 525
HpyF10VI GCNNNNNNNGC 2 cut(s) 182, 600
HpyF3I CTNAG 1 cut(s) 518
Hsp92II CATG 2 cut(s) 56, 229
Lsp1109I GCAGC 1 cut(s) 507
LweI GCATC 2 cut(s) 172, 512
MaeI CTAG 1 cut(s) 306
MaeIII GTNAC 2 cut(s) 319, 415
MboII GAAGA 3 cut(s) 89, 212, 310
MluCI AATT 2 cut(s) 609, 619
MluI ACGCGT 1 cut(s) 412
MlyI GAGTC 2 cut(s) 316, 553
MnlI CCTC 6 cut(s) 196, 228, 402, 442, 450, 593
MseI TTAA 1 cut(s) 623
MslI CAYNNNNRTG 2 cut(s) 230, 588
MspI CCGG 1 cut(s) 314
MvnI CGCG 1 cut(s) 414
MwoI GCNNNNNNNGC 2 cut(s) 182, 600
NlaIII CATG 2 cut(s) 56, 229
NlaIV GGNNCC 1 cut(s) 446
NmuCI GTSAC 1 cut(s) 319
OliI CACNNNNGTG 1 cut(s) 588
PagI TCATGA 1 cut(s) 225
PceI AGGCCT 1 cut(s) 603
PkrI GCNGC 1 cut(s) 497
PleI GAGTC 2 cut(s) 316, 553
PpsI GAGTC 2 cut(s) 316, 553
PspN4I GGNNCC 1 cut(s) 446
PspPI GGNCC 1 cut(s) 445
PstI CTGCAG 1 cut(s) 271
RsaI GTAC 2 cut(s) 371, 462
RsaNI GTAC 2 cut(s) 370, 461
RseI CAYNNNNRTG 2 cut(s) 230, 588
SaqAI TTAA 1 cut(s) 623
SatI GCNGC 1 cut(s) 496
Sau96I GGNCC 1 cut(s) 445
SchI GAGTC 2 cut(s) 316, 553
SfaNI GCATC 2 cut(s) 172, 512
SfcI CTRYAG 1 cut(s) 267
SinI GGWCC 1 cut(s) 445
SmiMI CAYNNNNRTG 2 cut(s) 230, 588
SmlI CTYRAG 1 cut(s) 144
SmoI CTYRAG 1 cut(s) 144
Sse9I AATT 2 cut(s) 609, 619
SseBI AGGCCT 1 cut(s) 603
SsiI CCGC 3 cut(s) 429, 580, 588
SspI AATATT 1 cut(s) 470
SspMI CTAG 1 cut(s) 306
StuI AGGCCT 1 cut(s) 603
StyI CCWWGG 1 cut(s) 396
TaaI ACNGT 2 cut(s) 38, 232
TaqI TCGA 2 cut(s) 279, 487
TaqII GACCGA 1 cut(s) 184
TasI AATT 2 cut(s) 609, 619
TatI WGTACW 2 cut(s) 369, 460
Tru1I TTAA 1 cut(s) 623
Tru9I TTAA 1 cut(s) 623
TscAI CASTG 3 cut(s) 237, 532, 590
TseFI GTSAC 1 cut(s) 319
TseI GCWGC 1 cut(s) 495
Tsp45I GTSAC 1 cut(s) 319
TspDTI ATGAA 2 cut(s) 69, 203
TspGWI ACGGA 2 cut(s) 105, 424
TspRI CASTG 3 cut(s) 237, 532, 590
VpaK11BI GGWCC 1 cut(s) 445
XapI RAATTY 1 cut(s) 619
XspI CTAG 1 cut(s) 306
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.