Prupe.8G036400_v2.0.a1

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0017190
Physical Location & Seq
Reverse (-)
3317649 .. 3318528
880 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G036400.1

Sequence Viewer

Length: 588 bp
ATGGCTTCCAATAACAACGAAACCCATAAGCCACGGATGCGCGTTATGATGCCCCGTGAGGTTTTCCACTTCACCATTCCAAAACCAGAAGAGTATGAGCACATGGATGAAGAAGATGTTATCTCTGAATCTGATGACGACTTTTCTTGTTCTTCTGTTCATTCAATGTGCGATTCATGTGTTACTTATGAAACTGAACATGATCATGAGATATATAGCCCACAAAGTGATAATTTGAGCTCTACCCATCATCAAGATCACGATCATGAGAATGAAGAAATCTACGGCCCAGAGCCACTGTCTCCACCAAGATGTGCAGCCTATTTTGACTGCAAGTTGTGTTTGAAGATGGCAACGGAGCCAGTGGTGACTCCATGTGGTCATTTATATTGCGGGGATTGTCTGGACAAATGGTTGCACTTCTTCACCTCTCATATGGAGTGCCCTGTTTGTCACAGTAAGGTGTTTGATTCGTCCATTGTTCCGATTAAGCCAACGCCGGTATGCAACAGAGACCTGAGTTCTGGCTTCAATGTGCCACCACCAACACCAAAGGGGGGGCTTTGCTTTCGAAGAACATTCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Prok-RING_4 zf-C3HC4 zf-C3HC4_3 zf-RING_5

Protein Analysis

196

Amino Acids

22.3

Weight (kDa)

5.08

Isoelectric Point (pI)

60.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74990
fragaria_vesca FvH4_4g34391
malus_domestica MD02G1215900.v1.1
prunus_persica Prupe.8G036400_v2.0.a1
pyrus_communis pycom07g09040
rosa_chinensis RchiOBHm_Chr4g0443821
rosa_laevigata RLG00000005885
rosa_roxburghii Rroxscaffold_5G00384390
rosa_rugosa Rorug04G0347600
rosa_samantha Rh4AG407800 Rh4BG418800 Rh4CG432900 Rh4DG414000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 42
AciI CCGC 1 cut(s) 393
AdeI CACNNNGTG 1 cut(s) 227
AfiI CCNNNNNNNGG 1 cut(s) 557
AgsI TTSAA 4 cut(s) 165, 346, 532, 583
AluBI AGCT 1 cut(s) 240
AluI AGCT 1 cut(s) 240
Alw21I GWGCWC 2 cut(s) 102, 242
Alw26I GTCTC 2 cut(s) 306, 507
AoxI GGCC 1 cut(s) 286
ApeKI GCWGC 1 cut(s) 317
AspLEI GCGC 1 cut(s) 42
AspS9I GGNCC 1 cut(s) 287
AsuHPI GGTGA 3 cut(s) 64, 379, 418
AsuII TTCGAA 1 cut(s) 571
BaeGI GKGCMC 1 cut(s) 446
BanII GRGCYC 1 cut(s) 242
Bbv12I GWGCWC 2 cut(s) 102, 242
BbvI GCAGC 1 cut(s) 329
BccI CCATC 2 cut(s) 255, 343
BceAI ACGGC 1 cut(s) 301
BclI TGATCA 1 cut(s) 202
BcoDI GTCTC 2 cut(s) 306, 507
BisI GCNGC 1 cut(s) 318
BlsI GCNGC 1 cut(s) 319
BmgT120I GGNCC 1 cut(s) 287
BmiI GGNNCC 1 cut(s) 360
BmsI GCATC 2 cut(s) 27, 39
Bpu14I TTCGAA 1 cut(s) 571
BsaBI GATNNNNATC 1 cut(s) 261
BsaI GGTCTC 1 cut(s) 507
BsaJI CCNNGG 1 cut(s) 32
Bsc4I CCNNNNNNNGG 1 cut(s) 557
Bse118I RCCGGY 1 cut(s) 499
Bse1I ACTGG 1 cut(s) 362
Bse8I GATNNNNATC 1 cut(s) 261
BseDI CCNNGG 1 cut(s) 32
BseGI GGATG 2 cut(s) 42, 112
BseJI GATNNNNATC 1 cut(s) 261
BseLI CCNNNNNNNGG 1 cut(s) 557
BseMII CTCAG 1 cut(s) 509
BseNI ACTGG 1 cut(s) 362
BseSI GKGCMC 1 cut(s) 446
BseXI GCAGC 1 cut(s) 329
BsgI GTGCAG 1 cut(s) 336
Bsh1236I CGCG 1 cut(s) 42
BshFI GGCC 1 cut(s) 288
BsiHKAI GWGCWC 2 cut(s) 102, 242
BsiSI CCGG 1 cut(s) 500
BslI CCNNNNNNNGG 1 cut(s) 557
BsmAI GTCTC 2 cut(s) 306, 507
BsnI GGCC 1 cut(s) 288
Bso31I GGTCTC 1 cut(s) 507
Bsp119I TTCGAA 1 cut(s) 571
Bsp1286I GDGCHC 3 cut(s) 102, 242, 446
Bsp143I GATC 3 cut(s) 202, 256, 262
BspACI CCGC 1 cut(s) 393
BspANI GGCC 1 cut(s) 288
BspCNI CTCAG 1 cut(s) 510
BspFNI CGCG 1 cut(s) 42
BspHI TCATGA 2 cut(s) 205, 265
BspLI GGNNCC 1 cut(s) 360
BspT104I TTCGAA 1 cut(s) 571
BspTNI GGTCTC 1 cut(s) 507
BsrFI RCCGGY 1 cut(s) 499
BsrI ACTGG 1 cut(s) 362
BssAI RCCGGY 1 cut(s) 499
BssECI CCNNGG 1 cut(s) 32
BssMI GATC 3 cut(s) 202, 256, 262
Bst4CI ACNGT 2 cut(s) 300, 458
Bst6I CTCTTC 1 cut(s) 84
BstBI TTCGAA 1 cut(s) 571
BstDEI CTNAG 1 cut(s) 518
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 2 cut(s) 42, 112
BstFNI CGCG 1 cut(s) 42
BstHHI GCGC 1 cut(s) 42
BstKTI GATC 3 cut(s) 205, 259, 265
BstMAI GTCTC 2 cut(s) 306, 507
BstMBI GATC 3 cut(s) 202, 256, 262
BstMWI GCNNNNNNNGC 1 cut(s) 37
BstSLI GKGCMC 1 cut(s) 446
BstUI CGCG 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 329
BsuRI GGCC 1 cut(s) 288
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 2 cut(s) 42, 112
BtsIMutI CAGTG 2 cut(s) 296, 369
CciI TCATGA 2 cut(s) 205, 265
CfoI GCGC 1 cut(s) 42
Cfr10I RCCGGY 1 cut(s) 499
Cfr13I GGNCC 1 cut(s) 287
CviAII CATG 6 cut(s) 103, 177, 200, 206, 266, 375
DdeI CTNAG 1 cut(s) 518
DpnI GATC 3 cut(s) 204, 258, 264
DpnII GATC 3 cut(s) 202, 256, 262
DraIII CACNNNGTG 1 cut(s) 227
Eam1104I CTCTTC 1 cut(s) 84
EarI CTCTTC 1 cut(s) 84
Ecl136II GAGCTC 1 cut(s) 240
Eco24I GRGCYC 1 cut(s) 242
Eco31I GGTCTC 1 cut(s) 507
Eco53kI GAGCTC 1 cut(s) 240
EcoICRI GAGCTC 1 cut(s) 240
EcoT38I GRGCYC 1 cut(s) 242
FaeI CATG 6 cut(s) 106, 180, 203, 209, 269, 378
FatI CATG 6 cut(s) 102, 176, 199, 205, 265, 374
FauI CCCGC 1 cut(s) 386
FauNDI CATATG 1 cut(s) 435
FbaI TGATCA 1 cut(s) 202
Fnu4HI GCNGC 1 cut(s) 318
FokI GGATG 2 cut(s) 49, 119
FriOI GRGCYC 1 cut(s) 242
Fsp4HI GCNGC 1 cut(s) 318
GlaI GCGC 1 cut(s) 41
GluI GCNGC 1 cut(s) 318
HaeIII GGCC 1 cut(s) 288
HapII CCGG 1 cut(s) 500
HhaI GCGC 1 cut(s) 42
Hin1II CATG 6 cut(s) 106, 180, 203, 209, 269, 378
Hin6I GCGC 1 cut(s) 40
HinP1I GCGC 1 cut(s) 40
HinfI GANTC 4 cut(s) 128, 173, 370, 470
HpaII CCGG 1 cut(s) 500
HphI GGTGA 3 cut(s) 64, 379, 418
Hpy188I TCNGA 3 cut(s) 127, 133, 486
Hpy188III TCNNGA 5 cut(s) 206, 254, 260, 266, 404
HpyCH4III ACNGT 2 cut(s) 300, 458
HpyCH4V TGCA 4 cut(s) 317, 333, 418, 507
HpyF10VI GCNNNNNNNGC 1 cut(s) 37
HpyF3I CTNAG 1 cut(s) 518
Hsp92II CATG 6 cut(s) 106, 180, 203, 209, 269, 378
HspAI GCGC 1 cut(s) 40
Ksp22I TGATCA 1 cut(s) 202
Kzo9I GATC 3 cut(s) 202, 256, 262
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 8 cut(s) 99, 303, 375, 389, 459, 510, 513, 530
Lsp1109I GCAGC 1 cut(s) 329
LweI GCATC 2 cut(s) 27, 39
MaeIII GTNAC 3 cut(s) 181, 367, 452
MalI GATC 3 cut(s) 204, 258, 264
MboI GATC 3 cut(s) 202, 256, 262
MboII GAAGA 8 cut(s) 101, 122, 125, 144, 287, 358, 415, 585
MhlI GDGCHC 3 cut(s) 102, 242, 446
MluCI AATT 2 cut(s) 232, 583
MlyI GAGTC 1 cut(s) 364
MnlI CCTC 2 cut(s) 52, 439
MseI TTAA 2 cut(s) 489, 586
MslI CAYNNNNRTG 5 cut(s) 105, 204, 264, 270, 310
MspI CCGG 1 cut(s) 500
MvnI CGCG 1 cut(s) 42
MwoI GCNNNNNNNGC 1 cut(s) 37
NdeI CATATG 1 cut(s) 435
NdeII GATC 3 cut(s) 202, 256, 262
NlaIII CATG 6 cut(s) 106, 180, 203, 209, 269, 378
NlaIV GGNNCC 1 cut(s) 360
NmuCI GTSAC 2 cut(s) 367, 452
NspV TTCGAA 1 cut(s) 571
PagI TCATGA 2 cut(s) 205, 265
PfeI GAWTC 3 cut(s) 128, 173, 470
PkrI GCNGC 1 cut(s) 319
PleI GAGTC 1 cut(s) 364
PpsI GAGTC 1 cut(s) 364
Psp124BI GAGCTC 1 cut(s) 242
PspN4I GGNNCC 1 cut(s) 360
PspPI GGNCC 1 cut(s) 287
RseI CAYNNNNRTG 5 cut(s) 105, 204, 264, 270, 310
SacI GAGCTC 1 cut(s) 242
SaqAI TTAA 2 cut(s) 489, 586
SatI GCNGC 1 cut(s) 318
Sau3AI GATC 3 cut(s) 202, 256, 262
Sau96I GGNCC 1 cut(s) 287
SchI GAGTC 1 cut(s) 364
SduI GDGCHC 3 cut(s) 102, 242, 446
SetI ASST 5 cut(s) 63, 242, 431, 465, 519
SfaNI GCATC 2 cut(s) 27, 39
SfuI TTCGAA 1 cut(s) 571
SmiMI CAYNNNNRTG 5 cut(s) 105, 204, 264, 270, 310
Sse9I AATT 2 cut(s) 232, 583
SsiI CCGC 1 cut(s) 393
SstI GAGCTC 1 cut(s) 242
TaaI ACNGT 2 cut(s) 300, 458
TaqI TCGA 1 cut(s) 571
TasI AATT 2 cut(s) 232, 583
TfiI GAWTC 3 cut(s) 128, 173, 470
Tru1I TTAA 2 cut(s) 489, 586
Tru9I TTAA 2 cut(s) 489, 586
TscAI CASTG 2 cut(s) 303, 369
TseFI GTSAC 2 cut(s) 367, 452
TseI GCWGC 1 cut(s) 317
Tsp45I GTSAC 2 cut(s) 367, 452
TspDTI ATGAA 5 cut(s) 123, 149, 165, 204, 288
TspGWI ACGGA 2 cut(s) 49, 371
TspRI CASTG 2 cut(s) 303, 369
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.