Rh4CG432900

ER-associated misfolded protein catabolic process

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4C
OG0017190
Physical Location & Seq
Forward (+)
67253419 .. 67254350
932 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4CG432900.1

Sequence Viewer

Length: 408 bp
ATGAGTGTCATTTTGCCTCAACCCCATATGATTTTCAGGTTGCCAAAGCCTGAAGACTACGACCACCTCGATGACGACGTCGTAGACGATCATCACCCTCCTCTCTCCGAAGAATCCGATGCATGTTTGGAAACTAGTCCCGATCACAATCCTCGTCATGAAAATGGTACTACCAGCAGCTCCAGACCTTCAACGGCGTCGTATTTCGATTGTAACTTGTGCTTCAAATCGGAGAGGCAGCCGGTTGTGACTGCGTGCGGGCATTTGTATTGCTACTCTTGCTTGTGCGACTGGCTGCAGTTTGGTCGGAAATGTCCTGTTTGTGAGGCCAAGGTGGATGACGGACGCATCTTTCCGATTTATCAATGCAGTGGACCGAGACCGAAGACACAATTGGTGCAAGTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Prok-RING_4 zf-C3HC4 zf-C3HC4_3

Protein Analysis

135

Amino Acids

15.31

Weight (kDa)

5.19

Isoelectric Point (pI)

62.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C3HC4_3 PF13920 70 - 113 1.3e-09 Zinc finger, C3HC4 type (RING finger)
zf-RING_2 PF13639 70 - 108 6.1e-08 Ring finger domain
zf-C3HC4_2 PF13923 71 - 108 6.3e-08 Zinc finger, C3HC4 type (RING finger)
zf-C3HC4 PF00097 71 - 108 1.1e-07 Zinc finger, C3HC4 type (RING finger)
Prok-RING_4 PF14447 71 - 117 4.4e-07 Prokaryotic RING finger family 4
zf-RING_5 PF14634 71 - 109 1.1e-06 zinc-RING finger domain
zf-RING_UBOX PF13445 71 - 106 5.8e-06 RING-type zinc-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017190)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G74990
fragaria_vesca FvH4_4g34391
malus_domestica MD02G1215900.v1.1
prunus_persica Prupe.8G036400_v2.0.a1
pyrus_communis pycom07g09040
rosa_chinensis RchiOBHm_Chr4g0443821
rosa_laevigata RLG00000005885
rosa_roxburghii Rroxscaffold_5G00384390
rosa_rugosa Rorug04G0347600
rosa_samantha Rh4AG407800 Rh4BG418800 Rh4CG432900 Rh4DG414000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 81
AccI GTMKAC 1 cut(s) 84
AciI CCGC 1 cut(s) 258
AcuI CTGAAG 1 cut(s) 72
AcyI GRCGYC 2 cut(s) 78, 197
AfaI GTAC 1 cut(s) 169
AgsI TTSAA 2 cut(s) 192, 226
AhlI ACTAGT 1 cut(s) 134
AjuI GAANNNNNNNTTGG 1 cut(s) 377
AluBI AGCT 1 cut(s) 180
AluI AGCT 1 cut(s) 180
Alw26I GTCTC 1 cut(s) 373
AoxI GGCC 1 cut(s) 327
ApeKI GCWGC 3 cut(s) 177, 238, 295
AspS9I GGNCC 1 cut(s) 374
AsuHPI GGTGA 1 cut(s) 86
AvaII GGWCC 1 cut(s) 374
BbsI GAAGAC 2 cut(s) 60, 392
BbvI GCAGC 3 cut(s) 189, 250, 282
BceAI ACGGC 1 cut(s) 210
BcgI CGANNNNNNTGC 2 cut(s) 287, 321
BcoDI GTCTC 1 cut(s) 373
BcuI ACTAGT 1 cut(s) 134
BfaI CTAG 1 cut(s) 135
BfmI CTRYAG 1 cut(s) 296
BisI GCNGC 3 cut(s) 178, 239, 296
BlsI GCNGC 3 cut(s) 179, 240, 297
Bme18I GGWCC 1 cut(s) 374
BmgT120I GGNCC 1 cut(s) 374
BmsI GCATC 2 cut(s) 109, 357
BpiI GAAGAC 2 cut(s) 60, 392
BpmI CTGGAG 1 cut(s) 166
BsaBI GATNNNNATC 1 cut(s) 147
BsaHI GRCGYC 2 cut(s) 78, 197
BsaI GGTCTC 1 cut(s) 373
BsaJI CCNNGG 1 cut(s) 330
Bse118I RCCGGY 1 cut(s) 241
Bse1I ACTGG 1 cut(s) 296
Bse8I GATNNNNATC 1 cut(s) 147
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 343
BseJI GATNNNNATC 1 cut(s) 147
BseNI ACTGG 1 cut(s) 296
BseRI GAGGAG 1 cut(s) 90
BseXI GCAGC 3 cut(s) 189, 250, 282
BshFI GGCC 1 cut(s) 329
BsiSI CCGG 1 cut(s) 242
BslFI GGGAC 1 cut(s) 123
BsmAI GTCTC 1 cut(s) 373
BsmFI GGGAC 1 cut(s) 123
BsnI GGCC 1 cut(s) 329
Bso31I GGTCTC 1 cut(s) 373
Bsp143I GATC 2 cut(s) 88, 142
BspACI CCGC 1 cut(s) 258
BspANI GGCC 1 cut(s) 329
BspHI TCATGA 1 cut(s) 157
BspMAI CTGCAG 1 cut(s) 300
BspTNI GGTCTC 1 cut(s) 373
BsrFI RCCGGY 1 cut(s) 241
BsrI ACTGG 1 cut(s) 296
BssAI RCCGGY 1 cut(s) 241
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 2 cut(s) 88, 142
BssNI GRCGYC 2 cut(s) 78, 197
BssT1I CCWWGG 1 cut(s) 330
BstACI GRCGYC 2 cut(s) 78, 197
BstC8I GCNNGC 2 cut(s) 256, 260
BstF5I GGATG 1 cut(s) 343
BstKTI GATC 2 cut(s) 91, 145
BstMAI GTCTC 1 cut(s) 373
BstMBI GATC 2 cut(s) 88, 142
BstMWI GCNNNNNNNGC 1 cut(s) 279
BstNSI RCATGY 1 cut(s) 126
BstSFI CTRYAG 1 cut(s) 296
BstV1I GCAGC 3 cut(s) 189, 250, 282
BstV2I GAAGAC 2 cut(s) 60, 392
BsuRI GGCC 1 cut(s) 329
BtsCI GGATG 1 cut(s) 343
BtsI GCAGTG 1 cut(s) 376
BtsIMutI CAGTG 1 cut(s) 376
Cac8I GCNNGC 2 cut(s) 256, 260
CciI TCATGA 1 cut(s) 157
Cfr10I RCCGGY 1 cut(s) 241
Cfr13I GGNCC 1 cut(s) 374
CseI GACGC 2 cut(s) 186, 354
Csp6I GTAC 1 cut(s) 168
CviAII CATG 2 cut(s) 123, 158
CviJI RGCY 5 cut(s) 49, 180, 241, 295, 329
CviKI_1 RGCY 5 cut(s) 49, 180, 241, 295, 329
CviQI GTAC 1 cut(s) 168
DpnI GATC 2 cut(s) 90, 144
DpnII GATC 2 cut(s) 88, 142
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 373
Eco47I GGWCC 1 cut(s) 374
Eco57I CTGAAG 1 cut(s) 72
EcoT14I CCWWGG 1 cut(s) 330
EcoT22I ATGCAT 1 cut(s) 124
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 2 cut(s) 126, 161
FaiI YATR 4 cut(s) 27, 29, 124, 159
FaqI GGGAC 1 cut(s) 123
FatI CATG 2 cut(s) 122, 157
FauI CCCGC 1 cut(s) 251
FauNDI CATATG 1 cut(s) 27
FblI GTMKAC 1 cut(s) 84
Fnu4HI GCNGC 3 cut(s) 178, 239, 296
FokI GGATG 1 cut(s) 350
Fsp4HI GCNGC 3 cut(s) 178, 239, 296
FspBI CTAG 1 cut(s) 135
GluI GCNGC 3 cut(s) 178, 239, 296
GsuI CTGGAG 1 cut(s) 166
HaeIII GGCC 1 cut(s) 329
HapII CCGG 1 cut(s) 242
HgaI GACGC 2 cut(s) 186, 354
Hin1I GRCGYC 2 cut(s) 78, 197
Hin1II CATG 2 cut(s) 126, 161
HinfI GANTC 1 cut(s) 113
HpaII CCGG 1 cut(s) 242
HphI GGTGA 1 cut(s) 86
Hpy166II GTNNAC 2 cut(s) 85, 374
Hpy188I TCNGA 5 cut(s) 109, 118, 232, 309, 357
Hpy188III TCNNGA 3 cut(s) 140, 158, 183
Hpy8I GTNNAC 2 cut(s) 85, 374
Hpy99I CGWCG 3 cut(s) 80, 83, 202
HpyAV CCTTC 1 cut(s) 198
HpyCH4IV ACGT 1 cut(s) 78
HpyCH4V TGCA 4 cut(s) 122, 298, 369, 400
HpyF10VI GCNNNNNNNGC 1 cut(s) 279
HpySE526I ACGT 1 cut(s) 78
Hsp92I GRCGYC 2 cut(s) 78, 197
Hsp92II CATG 2 cut(s) 126, 161
Kzo9I GATC 2 cut(s) 88, 142
LmnI GCTCC 1 cut(s) 185
LpnPI CCDG 7 cut(s) 22, 63, 187, 196, 255, 277, 330
Lsp1109I GCAGC 3 cut(s) 189, 250, 282
LweI GCATC 2 cut(s) 109, 357
MaeI CTAG 1 cut(s) 135
MaeII ACGT 1 cut(s) 78
MaeIII GTNAC 2 cut(s) 212, 247
MalI GATC 2 cut(s) 90, 144
MboI GATC 2 cut(s) 88, 142
MboII GAAGA 3 cut(s) 65, 122, 397
MfeI CAATTG 1 cut(s) 392
MluCI AATT 1 cut(s) 392
MmeI TCCRAC 1 cut(s) 287
MnlI CCTC 7 cut(s) 27, 77, 108, 111, 162, 228, 319
Mph1103I ATGCAT 1 cut(s) 124
MslI CAYNNNNRTG 2 cut(s) 69, 162
MspI CCGG 1 cut(s) 242
MunI CAATTG 1 cut(s) 392
MwoI GCNNNNNNNGC 1 cut(s) 279
NdeI CATATG 1 cut(s) 27
NdeII GATC 2 cut(s) 88, 142
NlaIII CATG 2 cut(s) 126, 161
NmuCI GTSAC 1 cut(s) 247
NsiI ATGCAT 1 cut(s) 124
NspI RCATGY 1 cut(s) 126
PagI TCATGA 1 cut(s) 157
PcsI WCGNNNNNNNCGW 3 cut(s) 66, 75, 84
PfeI GAWTC 1 cut(s) 113
PflFI GACNNNGTC 1 cut(s) 77
PkrI GCNGC 3 cut(s) 179, 240, 297
PspPI GGNCC 1 cut(s) 374
PstI CTGCAG 1 cut(s) 300
PsyI GACNNNGTC 1 cut(s) 77
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
RseI CAYNNNNRTG 2 cut(s) 69, 162
SatI GCNGC 3 cut(s) 178, 239, 296
Sau3AI GATC 2 cut(s) 88, 142
Sau96I GGNCC 1 cut(s) 374
SetI ASST 6 cut(s) 41, 69, 81, 182, 190, 336
SfaNI GCATC 2 cut(s) 109, 357
SfcI CTRYAG 1 cut(s) 296
SinI GGWCC 1 cut(s) 374
SmiMI CAYNNNNRTG 2 cut(s) 69, 162
SpeI ACTAGT 1 cut(s) 134
Sse9I AATT 1 cut(s) 392
SsiI CCGC 1 cut(s) 258
SspMI CTAG 1 cut(s) 135
StyI CCWWGG 1 cut(s) 330
TaiI ACGT 1 cut(s) 81
TaqI TCGA 2 cut(s) 69, 207
TaqII GACCGA 2 cut(s) 391, 397
TasI AATT 1 cut(s) 392
TfiI GAWTC 1 cut(s) 113
TscAI CASTG 1 cut(s) 376
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 3 cut(s) 177, 238, 295
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 1 cut(s) 174
TspGWI ACGGA 1 cut(s) 357
TspRI CASTG 1 cut(s) 376
Tth111I GACNNNGTC 1 cut(s) 77
VpaK11BI GGWCC 1 cut(s) 374
XceI RCATGY 1 cut(s) 126
XmiI GTMKAC 1 cut(s) 84
XspI CTAG 1 cut(s) 135
ZraI GACGTC 1 cut(s) 79
Zsp2I ATGCAT 1 cut(s) 124
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.