Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012771

Physical Location & Seq

Genomic Coordinates Reverse (-)

28441501 .. 28442435

Gene Structure 935 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G75750.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ATGGCTATTTCAAAAGCTCTTATCGCTTCTCTTCTCATATCTCTTCTTGTTCTCCAACTCGTCCAGGCTGATGTCGAAAACTCACAGAAGAAAAATGGTTACGCAAAGAAGATCGATTGTGGGAGTGCGTGTGTAGCACGGTGCAGGCTTTCGAGGAGGCCGAGGCTGTGTCACAGAGCGTGCGGGACTTGCTGCTACAGGTGCAACTGTGTGCCTCCGGGTACGTACGGAAACTACGACAAGTGCCAGTGCTACGCTAGCCTCACCACCCACGGTGGACGCCGCAAGTGCCCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

98

Amino Acids

10.74

Weight (kDa)

9.4

Isoelectric Point (pI)

43.38

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	39 - 98	4.4e-21	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0012771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75750 AT1G75750
fragaria_vesca	FvH4_2g38480
malus_domestica	MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica	Prupe.1G365600_v2.0.a1
pyrus_communis	pycom08g01160 pycom15g01090
rosa_chinensis	RchiOBHm_Chr6g0302821
rosa_laevigata	RLG00000011135
rosa_roxburghii	Rroxscaffold_7G00165290
rosa_rugosa	Rorug06G0317500
rosa_samantha	Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana	Rw6G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	183, 283
AcyI	GRCGYC	1 cut(s)	280
AfaI	GTAC	2 cut(s)	223, 227
AgsI	TTSAA	1 cut(s)	12
AjnI	CCWGG	1 cut(s)	63
AluBI	AGCT	1 cut(s)	17
AluI	AGCT	1 cut(s)	17
AoxI	GGCC	1 cut(s)	158
ApeKI	GCWGC	1 cut(s)	192
AsuC2I	CCSGG	1 cut(s)	219
AsuHPI	GGTGA	1 cut(s)	256
AsuNHI	GCTAGC	1 cut(s)	257
BaeGI	GKGCMC	1 cut(s)	293
BbvI	GCAGC	1 cut(s)	179
BciT130I	CCWGG	1 cut(s)	65
BcnI	CCSGG	1 cut(s)	219
BfaI	CTAG	1 cut(s)	258
BfmI	CTRYAG	1 cut(s)	196
BisI	GCNGC	2 cut(s)	193, 283
BlsI	GCNGC	2 cut(s)	194, 284
Bme1390I	CCNGG	2 cut(s)	65, 219
BmrFI	CCNGG	2 cut(s)	65, 219
BmtI	GCTAGC	1 cut(s)	261
BpuMI	CCSGG	1 cut(s)	219
Bsa29I	ATCGAT	1 cut(s)	114
BsaAI	YACGTR	1 cut(s)	225
BsaHI	GRCGYC	1 cut(s)	280
BsaJI	CCNNGG	2 cut(s)	161, 271
BsaXI	ACNNNNNCTCC	2 cut(s)	115, 145
Bse1I	ACTGG	1 cut(s)	247
BseBI	CCWGG	1 cut(s)	65
BseCI	ATCGAT	1 cut(s)	114
BseDI	CCNNGG	2 cut(s)	161, 271
BseNI	ACTGG	1 cut(s)	247
BseRI	GAGGAG	1 cut(s)	169
BseSI	GKGCMC	1 cut(s)	293
BseXI	GCAGC	1 cut(s)	179
BsgI	GTGCAG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	160
BshVI	ATCGAT	1 cut(s)	114
BsiSI	CCGG	1 cut(s)	218
BsiWI	CGTACG	1 cut(s)	225
BslFI	GGGAC	1 cut(s)	199
BsmFI	GGGAC	1 cut(s)	199
BsnI	GGCC	1 cut(s)	160
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	1 cut(s)	111
BspACI	CCGC	2 cut(s)	183, 283
BspANI	GGCC	1 cut(s)	160
BspDI	ATCGAT	1 cut(s)	114
BspOI	GCTAGC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	247
BssECI	CCNNGG	2 cut(s)	161, 271
BssMI	GATC	1 cut(s)	111
BssNI	GRCGYC	1 cut(s)	280
Bst2UI	CCWGG	1 cut(s)	65
Bst4CI	ACNGT	3 cut(s)	141, 209, 275
Bst6I	CTCTTC	2 cut(s)	36, 48
BstACI	GRCGYC	1 cut(s)	280
BstBAI	YACGTR	1 cut(s)	225
BstC8I	GCNNGC	3 cut(s)	146, 181, 259
BstDSI	CCRYGG	1 cut(s)	271
BstKTI	GATC	1 cut(s)	114
BstMBI	GATC	1 cut(s)	111
BstMWI	GCNNNNNNNGC	6 cut(s)	23, 134, 189, 201, 258, 288
BstNI	CCWGG	1 cut(s)	65
BstSCI	CCNGG	2 cut(s)	63, 217
BstSFI	CTRYAG	1 cut(s)	196
BstSLI	GKGCMC	1 cut(s)	293
BstSNI	TACGTA	1 cut(s)	225
BstV1I	GCAGC	1 cut(s)	179
Bsu15I	ATCGAT	1 cut(s)	114
BsuRI	GGCC	1 cut(s)	160
BsuTUI	ATCGAT	1 cut(s)	114
BtgI	CCRYGG	1 cut(s)	271
BtsIMutI	CAGTG	1 cut(s)	254
Cac8I	GCNNGC	3 cut(s)	146, 181, 259
ClaI	ATCGAT	1 cut(s)	114
CseI	GACGC	1 cut(s)	288
Csp6I	GTAC	2 cut(s)	222, 226
CviJI	RGCY	7 cut(s)	5, 17, 68, 148, 160, 166, 261
CviKI_1	RGCY	7 cut(s)	5, 17, 68, 148, 160, 166, 261
CviQI	GTAC	2 cut(s)	222, 226
DpnI	GATC	1 cut(s)	113
DpnII	GATC	1 cut(s)	111
Eam1104I	CTCTTC	2 cut(s)	36, 48
EarI	CTCTTC	2 cut(s)	36, 48
Eco105I	TACGTA	1 cut(s)	225
EcoRII	CCWGG	1 cut(s)	63
FaiI	YATR	2 cut(s)	38, 295
FaqI	GGGAC	1 cut(s)	199
FauI	CCCGC	1 cut(s)	176
Fnu4HI	GCNGC	2 cut(s)	193, 283
Fsp4HI	GCNGC	2 cut(s)	193, 283
FspBI	CTAG	1 cut(s)	258
GluI	GCNGC	2 cut(s)	193, 283
HaeIII	GGCC	1 cut(s)	160
HapII	CCGG	1 cut(s)	218
HgaI	GACGC	1 cut(s)	288
Hin1I	GRCGYC	1 cut(s)	280
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	1 cut(s)	256
Hpy166II	GTNNAC	1 cut(s)	278
Hpy8I	GTNNAC	1 cut(s)	278
HpyCH4III	ACNGT	3 cut(s)	141, 209, 275
HpyCH4IV	ACGT	1 cut(s)	224
HpyCH4V	TGCA	2 cut(s)	144, 204
HpyF10VI	GCNNNNNNNGC	6 cut(s)	23, 134, 189, 201, 258, 288
HpySE526I	ACGT	1 cut(s)	224
Hsp92I	GRCGYC	1 cut(s)	280
Kzo9I	GATC	1 cut(s)	111
LpnPI	CCDG	6 cut(s)	50, 77, 130, 184, 231, 260
Lsp1109I	GCAGC	1 cut(s)	179
MaeI	CTAG	1 cut(s)	258
MaeII	ACGT	1 cut(s)	224
MaeIII	GTNAC	2 cut(s)	98, 170
MalI	GATC	1 cut(s)	113
MboI	GATC	1 cut(s)	111
MboII	GAAGA	4 cut(s)	23, 35, 100, 121
MhlI	GDGCHC	1 cut(s)	293
MmeI	TCCRAC	1 cut(s)	79
MnlI	CCTC	5 cut(s)	147, 150, 156, 225, 272
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	2 cut(s)	65, 219
MvaI	CCWGG	1 cut(s)	65
MwoI	GCNNNNNNNGC	6 cut(s)	23, 134, 189, 201, 258, 288
NciI	CCSGG	1 cut(s)	219
NdeII	GATC	1 cut(s)	111
NheI	GCTAGC	1 cut(s)	257
NmeAIII	GCCGAG	1 cut(s)	186
NmuCI	GTSAC	1 cut(s)	170
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 234
Pfl23II	CGTACG	1 cut(s)	225
PkrI	GCNGC	2 cut(s)	194, 284
Ppu21I	YACGTR	1 cut(s)	225
Psp6I	CCWGG	1 cut(s)	63
PspGI	CCWGG	1 cut(s)	63
PspLI	CGTACG	1 cut(s)	225
RsaI	GTAC	2 cut(s)	223, 227
RsaNI	GTAC	2 cut(s)	222, 226
SatI	GCNGC	2 cut(s)	193, 283
Sau3AI	GATC	1 cut(s)	111
ScrFI	CCNGG	2 cut(s)	65, 219
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	3 cut(s)	19, 203, 227
SfcI	CTRYAG	1 cut(s)	196
SnaBI	TACGTA	1 cut(s)	225
SsiI	CCGC	2 cut(s)	183, 283
SspMI	CTAG	1 cut(s)	258
StyD4I	CCNGG	2 cut(s)	63, 217
TaaI	ACNGT	3 cut(s)	141, 209, 275
TaiI	ACGT	1 cut(s)	227
TaqI	TCGA	3 cut(s)	75, 114, 152
TauI	GCSGC	1 cut(s)	285
TscAI	CASTG	1 cut(s)	254
TseFI	GTSAC	1 cut(s)	170
TseI	GCWGC	1 cut(s)	192
Tsp45I	GTSAC	1 cut(s)	170
TspGWI	ACGGA	1 cut(s)	243
TspRI	CASTG	1 cut(s)	254
XspI	CTAG	1 cut(s)	258

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.