Rroxscaffold_7G00165290

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012771
Physical Location & Seq
Forward (+)
7084824 .. 7085659
836 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00165290.1

Sequence Viewer

Length: 315 bp
ATGAACTCCAGGCTTGTGGTTGTTTCGGTTCTCTTGATGATGATGGTTTCCCTTCTTGTTTTCAGTCCTGTTGAGGCTGATGGAGTAGTGGTGAACAACAATACACAACATGCTTCACTCCTCGATAAAATGGACTGCGGTGGAGCGTGCACTGCGAGGTGTCGTTTATCATCTCGGCCTCGGCTGTGCAAGAGGGCATGCGGGACTTGCTGCCAGCGTTGCAGCTGTGTCCCTCCCGGCACGGCTGGAAACTACGACGTCTGCCCCTGTTACGCTAGCCTCACCACCCACGGCGGCAGACGCAAGTGTCCTTAA

Protein Analysis

104

Amino Acids

11.11

Weight (kDa)

8.94

Isoelectric Point (pI)

53.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 45 - 104 1.1e-21 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75750 AT1G75750
fragaria_vesca FvH4_2g38480
malus_domestica MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica Prupe.1G365600_v2.0.a1
pyrus_communis pycom08g01160 pycom15g01090
rosa_chinensis RchiOBHm_Chr6g0302821
rosa_laevigata RLG00000011135
rosa_roxburghii Rroxscaffold_7G00165290
rosa_rugosa Rorug06G0317500
rosa_samantha Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana Rw6G037310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 306
AatII GACGTC 1 cut(s) 261
AciI CCGC 3 cut(s) 138, 201, 294
AcyI GRCGYC 1 cut(s) 258
AjnI CCWGG 1 cut(s) 8
AluBI AGCT 1 cut(s) 225
AluI AGCT 1 cut(s) 225
Alw21I GWGCWC 1 cut(s) 152
Alw44I GTGCAC 1 cut(s) 148
AoxI GGCC 1 cut(s) 176
ApaLI GTGCAC 1 cut(s) 148
ApeKI GCWGC 2 cut(s) 210, 222
AsuC2I CCSGG 1 cut(s) 237
AsuHPI GGTGA 2 cut(s) 103, 274
AsuNHI GCTAGC 1 cut(s) 275
BaeGI GKGCMC 1 cut(s) 152
Bbv12I GWGCWC 1 cut(s) 152
BbvI GCAGC 2 cut(s) 197, 234
BccI CCATC 2 cut(s) 37, 74
BceAI ACGGC 2 cut(s) 258, 307
BciT130I CCWGG 1 cut(s) 10
BcnI CCSGG 1 cut(s) 237
BfaI CTAG 1 cut(s) 276
BisI GCNGC 3 cut(s) 211, 223, 295
BlsI GCNGC 3 cut(s) 212, 224, 296
Bme1390I CCNGG 2 cut(s) 10, 237
BmrFI CCNGG 2 cut(s) 10, 237
BmtI GCTAGC 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 237
BsaHI GRCGYC 1 cut(s) 258
BsaJI CCNNGG 2 cut(s) 179, 289
BsaXI ACNNNNNCTCC 2 cut(s) 75, 105
BseBI CCWGG 1 cut(s) 10
BseDI CCNNGG 2 cut(s) 179, 289
BseRI GAGGAG 1 cut(s) 110
BseSI GKGCMC 1 cut(s) 152
BseXI GCAGC 2 cut(s) 197, 234
BshFI GGCC 1 cut(s) 178
BsiHKAI GWGCWC 1 cut(s) 152
BsiSI CCGG 1 cut(s) 237
BslFI GGGAC 2 cut(s) 215, 217
BsmFI GGGAC 2 cut(s) 215, 217
BsnI GGCC 1 cut(s) 178
Bsp1286I GDGCHC 1 cut(s) 152
BspACI CCGC 3 cut(s) 138, 201, 294
BspANI GGCC 1 cut(s) 178
BspOI GCTAGC 1 cut(s) 279
BssECI CCNNGG 2 cut(s) 179, 289
BssNI GRCGYC 1 cut(s) 258
Bst2UI CCWGG 1 cut(s) 10
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 4 cut(s) 148, 199, 215, 277
BstDSI CCRYGG 1 cut(s) 289
BstMWI GCNNNNNNNGC 4 cut(s) 152, 207, 219, 300
BstNI CCWGG 1 cut(s) 10
BstNSI RCATGY 2 cut(s) 113, 201
BstSCI CCNGG 2 cut(s) 8, 235
BstSLI GKGCMC 1 cut(s) 152
BstV1I GCAGC 2 cut(s) 197, 234
BstXI CCANNNNNNTGG 1 cut(s) 16
BsuRI GGCC 1 cut(s) 178
BtgI CCRYGG 1 cut(s) 289
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 1 cut(s) 150
Cac8I GCNNGC 4 cut(s) 148, 199, 215, 277
CseI GACGC 1 cut(s) 309
CviAII CATG 2 cut(s) 110, 198
CviJI RGCY 7 cut(s) 13, 77, 178, 184, 225, 245, 279
CviKI_1 RGCY 7 cut(s) 13, 77, 178, 184, 225, 245, 279
DrdI GACNNNNNNGTC 1 cut(s) 306
DseDI GACNNNNNNGTC 1 cut(s) 306
EcoRII CCWGG 1 cut(s) 8
FaeI CATG 2 cut(s) 113, 201
FaiI YATR 2 cut(s) 111, 199
FaqI GGGAC 2 cut(s) 215, 217
FatI CATG 2 cut(s) 109, 197
FauI CCCGC 1 cut(s) 194
Fnu4HI GCNGC 3 cut(s) 211, 223, 295
Fsp4HI GCNGC 3 cut(s) 211, 223, 295
FspBI CTAG 1 cut(s) 276
GluI GCNGC 3 cut(s) 211, 223, 295
HaeIII GGCC 1 cut(s) 178
HapII CCGG 1 cut(s) 237
HgaI GACGC 1 cut(s) 309
Hin1I GRCGYC 1 cut(s) 258
Hin1II CATG 2 cut(s) 113, 201
HpaII CCGG 1 cut(s) 237
HphI GGTGA 2 cut(s) 103, 274
Hpy166II GTNNAC 2 cut(s) 94, 150
Hpy188III TCNNGA 1 cut(s) 34
Hpy8I GTNNAC 2 cut(s) 94, 150
Hpy99I CGWCG 1 cut(s) 260
HpyAV CCTTC 1 cut(s) 62
HpyCH4IV ACGT 1 cut(s) 258
HpyCH4V TGCA 3 cut(s) 150, 189, 222
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 207, 219, 300
HpySE526I ACGT 1 cut(s) 258
Hsp92I GRCGYC 1 cut(s) 258
Hsp92II CATG 2 cut(s) 113, 201
LmnI GCTCC 1 cut(s) 143
LpnPI CCDG 6 cut(s) 22, 81, 227, 231, 250, 280
Lsp1109I GCAGC 2 cut(s) 197, 234
MaeI CTAG 1 cut(s) 276
MaeII ACGT 1 cut(s) 258
MaeIII GTNAC 1 cut(s) 269
MhlI GDGCHC 1 cut(s) 152
MnlI CCTC 7 cut(s) 67, 131, 150, 186, 189, 243, 290
MseI TTAA 1 cut(s) 313
MspA1I CMGCKG 1 cut(s) 225
MspI CCGG 1 cut(s) 237
MspR9I CCNGG 2 cut(s) 10, 237
MvaI CCWGG 1 cut(s) 10
MwoI GCNNNNNNNGC 4 cut(s) 152, 207, 219, 300
NciI CCSGG 1 cut(s) 237
NheI GCTAGC 1 cut(s) 275
NlaIII CATG 2 cut(s) 113, 201
NmeAIII GCCGAG 2 cut(s) 154, 160
NspI RCATGY 2 cut(s) 113, 201
PaeI GCATGC 1 cut(s) 201
PkrI GCNGC 3 cut(s) 212, 224, 296
Psp6I CCWGG 1 cut(s) 8
PspGI CCWGG 1 cut(s) 8
PvuII CAGCTG 1 cut(s) 225
SaqAI TTAA 1 cut(s) 313
SatI GCNGC 3 cut(s) 211, 223, 295
ScrFI CCNGG 2 cut(s) 10, 237
SduI GDGCHC 1 cut(s) 152
SetI ASST 3 cut(s) 161, 227, 261
SphI GCATGC 1 cut(s) 201
SsiI CCGC 3 cut(s) 138, 201, 294
SspMI CTAG 1 cut(s) 276
StyD4I CCNGG 2 cut(s) 8, 235
TaiI ACGT 1 cut(s) 261
TaqI TCGA 1 cut(s) 123
TauI GCSGC 1 cut(s) 297
Tru1I TTAA 1 cut(s) 313
Tru9I TTAA 1 cut(s) 313
TscAI CASTG 1 cut(s) 157
TseI GCWGC 2 cut(s) 210, 222
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 157
VneI GTGCAC 1 cut(s) 148
XceI RCATGY 2 cut(s) 113, 201
XspI CTAG 1 cut(s) 276
ZraI GACGTC 1 cut(s) 259
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.