FvH4_2g38480

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012771
Physical Location & Seq
Forward (+)
27841812 .. 27842899
1088 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g38480.t1

Sequence Viewer

Length: 321 bp
ATGATGATGAACTACTCCAGGCTTGTGTTTGTTTCAGTTCTGTTGATGATGATGATTTCCCTTCTTGTTTTCAGCCCTGTTGAGGCTGATGGAGTAGTGGTGAACAACGGACAACATGCTTCACTCCTTGCCAAAATAGACTGCGGTGGAGCGTGCACAGCGAGGTGTCGTTTATCGTCTCGGCCTAACCTGTGCAAGCGGGCATGCGGGACATGCTGCCAGCGTTGCAGCTGCGTTCCTCCCGGCACGGCTGGAAACTACGACGTCTGCCCCTGTTACGCTACCCTCACCACCCACGGCGGCAAACGCAAGTGTCCTTAA

Protein Analysis

107

Amino Acids

11.33

Weight (kDa)

8.92

Isoelectric Point (pI)

46.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 47 - 106 8.2e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75750 AT1G75750
fragaria_vesca FvH4_2g38480
malus_domestica MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica Prupe.1G365600_v2.0.a1
pyrus_communis pycom08g01160 pycom15g01090
rosa_chinensis RchiOBHm_Chr6g0302821
rosa_laevigata RLG00000011135
rosa_roxburghii Rroxscaffold_7G00165290
rosa_rugosa Rorug06G0317500
rosa_samantha Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana Rw6G037310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 267
AciI CCGC 4 cut(s) 144, 199, 207, 300
AcyI GRCGYC 1 cut(s) 264
AfiI CCNNNNNNNGG 1 cut(s) 82
AjnI CCWGG 1 cut(s) 17
AluBI AGCT 1 cut(s) 231
AluI AGCT 1 cut(s) 231
Alw21I GWGCWC 1 cut(s) 158
Alw26I GTCTC 1 cut(s) 183
Alw44I GTGCAC 1 cut(s) 154
AoxI GGCC 1 cut(s) 182
ApaLI GTGCAC 1 cut(s) 154
ApeKI GCWGC 3 cut(s) 216, 228, 231
AsuC2I CCSGG 1 cut(s) 243
AsuHPI GGTGA 2 cut(s) 112, 280
BaeGI GKGCMC 1 cut(s) 158
Bbv12I GWGCWC 1 cut(s) 158
BbvI GCAGC 3 cut(s) 203, 218, 240
BccI CCATC 1 cut(s) 83
BceAI ACGGC 2 cut(s) 264, 313
BciT130I CCWGG 1 cut(s) 19
BcnI CCSGG 1 cut(s) 243
BcoDI GTCTC 1 cut(s) 183
BisI GCNGC 4 cut(s) 217, 229, 232, 301
BlsI GCNGC 4 cut(s) 218, 230, 233, 302
Bme1390I CCNGG 2 cut(s) 19, 243
BmrFI CCNGG 2 cut(s) 19, 243
BpuMI CCSGG 1 cut(s) 243
BsaHI GRCGYC 1 cut(s) 264
BsaJI CCNNGG 1 cut(s) 295
BsaXI ACNNNNNCTCC 2 cut(s) 84, 114
Bsc4I CCNNNNNNNGG 1 cut(s) 82
BseBI CCWGG 1 cut(s) 19
BseDI CCNNGG 1 cut(s) 295
BseLI CCNNNNNNNGG 1 cut(s) 82
BseSI GKGCMC 1 cut(s) 158
BseXI GCAGC 3 cut(s) 203, 218, 240
BshFI GGCC 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 158
BsiSI CCGG 1 cut(s) 243
BslFI GGGAC 1 cut(s) 223
BslI CCNNNNNNNGG 1 cut(s) 82
BsmAI GTCTC 1 cut(s) 183
BsmBI CGTCTC 1 cut(s) 183
BsmFI GGGAC 1 cut(s) 223
BsnI GGCC 1 cut(s) 184
Bsp1286I GDGCHC 1 cut(s) 158
BspACI CCGC 4 cut(s) 144, 199, 207, 300
BspANI GGCC 1 cut(s) 184
BssECI CCNNGG 1 cut(s) 295
BssNI GRCGYC 1 cut(s) 264
Bst2UI CCWGG 1 cut(s) 19
BstACI GRCGYC 1 cut(s) 264
BstC8I GCNNGC 5 cut(s) 154, 197, 201, 205, 221
BstDSI CCRYGG 1 cut(s) 295
BstMAI GTCTC 1 cut(s) 183
BstMWI GCNNNNNNNGC 4 cut(s) 158, 213, 225, 306
BstNI CCWGG 1 cut(s) 19
BstNSI RCATGY 3 cut(s) 119, 207, 216
BstSCI CCNGG 2 cut(s) 17, 241
BstSLI GKGCMC 1 cut(s) 158
BstV1I GCAGC 3 cut(s) 203, 218, 240
BsuRI GGCC 1 cut(s) 184
BtgI CCRYGG 1 cut(s) 295
Cac8I GCNNGC 5 cut(s) 154, 197, 201, 205, 221
CviAII CATG 3 cut(s) 116, 204, 213
CviJI RGCY 6 cut(s) 22, 75, 86, 184, 231, 251
CviKI_1 RGCY 6 cut(s) 22, 75, 86, 184, 231, 251
EcoRII CCWGG 1 cut(s) 17
Esp3I CGTCTC 1 cut(s) 183
FaeI CATG 3 cut(s) 119, 207, 216
FaiI YATR 3 cut(s) 117, 205, 214
FaqI GGGAC 1 cut(s) 223
FatI CATG 3 cut(s) 115, 203, 212
FauI CCCGC 2 cut(s) 192, 200
Fnu4HI GCNGC 4 cut(s) 217, 229, 232, 301
Fsp4HI GCNGC 4 cut(s) 217, 229, 232, 301
GluI GCNGC 4 cut(s) 217, 229, 232, 301
HaeIII GGCC 1 cut(s) 184
HapII CCGG 1 cut(s) 243
Hin1I GRCGYC 1 cut(s) 264
Hin1II CATG 3 cut(s) 119, 207, 216
HpaII CCGG 1 cut(s) 243
HphI GGTGA 2 cut(s) 112, 280
Hpy166II GTNNAC 2 cut(s) 103, 156
Hpy8I GTNNAC 2 cut(s) 103, 156
Hpy99I CGWCG 1 cut(s) 266
HpyAV CCTTC 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 264
HpyCH4V TGCA 3 cut(s) 156, 195, 228
HpyF10VI GCNNNNNNNGC 4 cut(s) 158, 213, 225, 306
HpySE526I ACGT 1 cut(s) 264
Hsp92I GRCGYC 1 cut(s) 264
Hsp92II CATG 3 cut(s) 119, 207, 216
LmnI GCTCC 1 cut(s) 149
LpnPI CCDG 8 cut(s) 4, 31, 90, 203, 233, 237, 256, 286
Lsp1109I GCAGC 3 cut(s) 203, 218, 240
MaeII ACGT 1 cut(s) 264
MaeIII GTNAC 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 158
MnlI CCTC 4 cut(s) 76, 156, 249, 296
MseI TTAA 1 cut(s) 319
MspA1I CMGCKG 1 cut(s) 231
MspI CCGG 1 cut(s) 243
MspR9I CCNGG 2 cut(s) 19, 243
MvaI CCWGG 1 cut(s) 19
MwoI GCNNNNNNNGC 4 cut(s) 158, 213, 225, 306
NciI CCSGG 1 cut(s) 243
NlaIII CATG 3 cut(s) 119, 207, 216
NmeAIII GCCGAG 1 cut(s) 160
NspI RCATGY 3 cut(s) 119, 207, 216
PaeI GCATGC 1 cut(s) 207
PkrI GCNGC 4 cut(s) 218, 230, 233, 302
Psp6I CCWGG 1 cut(s) 17
PspGI CCWGG 1 cut(s) 17
PvuII CAGCTG 1 cut(s) 231
SaqAI TTAA 1 cut(s) 319
SatI GCNGC 4 cut(s) 217, 229, 232, 301
ScrFI CCNGG 2 cut(s) 19, 243
SduI GDGCHC 1 cut(s) 158
SetI ASST 4 cut(s) 167, 192, 233, 267
SphI GCATGC 1 cut(s) 207
SsiI CCGC 4 cut(s) 144, 199, 207, 300
StyD4I CCNGG 2 cut(s) 17, 241
TaiI ACGT 1 cut(s) 267
TauI GCSGC 1 cut(s) 303
Tru1I TTAA 1 cut(s) 319
Tru9I TTAA 1 cut(s) 319
TseI GCWGC 3 cut(s) 216, 228, 231
TspDTI ATGAA 1 cut(s) 23
TspGWI ACGGA 1 cut(s) 123
VneI GTGCAC 1 cut(s) 154
XceI RCATGY 3 cut(s) 119, 207, 216
ZraI GACGTC 1 cut(s) 265
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.