Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012771

Physical Location & Seq

Genomic Coordinates Forward (+)

695217 .. 696206

Gene Structure 990 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1012300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGCTGCCATCTCAAAATCATCCAGGGCTGTGATTGTTTCACTGCTTCTCGTTTCCCTTCTTGTTTTCAATCTCGTTGAAGCTGATGAGAAGGTAAACTCAAATCCAGGACCAGAACAGAGTTCTCTCCTCAAGAAAATAGACTGCGGCGCGGCATGCAGTGCTCGCTGTCGTTTATCATCTAGGCCTCATCTATGCAAGAGAGCATGCGGGACTTGCTGCCAGCGTTGCAGCTGTGTTCCTCCGGGTACCGCCGGCAATCAAGAGGCCTGCCCGTGTTACGCCAGCCTCACTACCCACGGCGGCAGACGCAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

108

Amino Acids

11.25

Weight (kDa)

9.04

Isoelectric Point (pI)

54.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	48 - 107	1.4e-21	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75750 AT1G75750
fragaria_vesca	FvH4_2g38480
malus_domestica	MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica	Prupe.1G365600_v2.0.a1
pyrus_communis	pycom08g01160 pycom15g01090
rosa_chinensis	RchiOBHm_Chr6g0302821
rosa_laevigata	RLG00000011135
rosa_roxburghii	Rroxscaffold_7G00165290
rosa_rugosa	Rorug06G0317500
rosa_samantha	Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana	Rw6G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	248
AccB1I	GGYRCC	1 cut(s)	248
AccII	CGCG	1 cut(s)	152
AciI	CCGC	5 cut(s)	147, 152, 210, 252, 303
AfaI	GTAC	1 cut(s)	250
AgsI	TTSAA	2 cut(s)	70, 80
AjnI	CCWGG	2 cut(s)	23, 106
AluBI	AGCT	2 cut(s)	83, 234
AluI	AGCT	2 cut(s)	83, 234
Alw21I	GWGCWC	1 cut(s)	166
AoxI	GGCC	2 cut(s)	185, 267
ApeKI	GCWGC	3 cut(s)	5, 219, 231
Asp718I	GGTACC	1 cut(s)	248
AspLEI	GCGC	1 cut(s)	152
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	246
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	320
BanI	GGYRCC	1 cut(s)	248
Bbv12I	GWGCWC	1 cut(s)	166
BbvI	GCAGC	2 cut(s)	206, 243
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	316
BciT130I	CCWGG	2 cut(s)	25, 108
BcnI	CCSGG	1 cut(s)	246
BfaI	CTAG	1 cut(s)	183
BisI	GCNGC	6 cut(s)	6, 148, 153, 220, 232, 304
BlsI	GCNGC	6 cut(s)	7, 149, 154, 221, 233, 305
Bme1390I	CCNGG	3 cut(s)	25, 108, 246
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	250
BmrFI	CCNGG	3 cut(s)	25, 108, 246
BpuEI	CTTGAG	1 cut(s)	116
BpuMI	CCSGG	1 cut(s)	246
BsaJI	CCNNGG	2 cut(s)	24, 298
Bse118I	RCCGGY	1 cut(s)	254
BseBI	CCWGG	2 cut(s)	25, 108
BseDI	CCNNGG	2 cut(s)	24, 298
BseGI	GGATG	1 cut(s)	20
BseRI	GAGGAG	1 cut(s)	119
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	2 cut(s)	206, 243
Bsh1236I	CGCG	1 cut(s)	152
BshFI	GGCC	2 cut(s)	187, 269
BshNI	GGYRCC	1 cut(s)	248
BsiHKAI	GWGCWC	1 cut(s)	166
BsiSI	CCGG	2 cut(s)	245, 255
BslFI	GGGAC	1 cut(s)	226
BsmFI	GGGAC	1 cut(s)	226
BsnI	GGCC	2 cut(s)	187, 269
Bsp1286I	GDGCHC	2 cut(s)	166, 320
BspACI	CCGC	5 cut(s)	147, 152, 210, 252, 303
BspANI	GGCC	2 cut(s)	187, 269
BspFNI	CGCG	1 cut(s)	152
BspLI	GGNNCC	1 cut(s)	250
BspT107I	GGYRCC	1 cut(s)	248
BsrFI	RCCGGY	1 cut(s)	254
BssAI	RCCGGY	1 cut(s)	254
BssECI	CCNNGG	2 cut(s)	24, 298
Bst2UI	CCWGG	2 cut(s)	25, 108
BstAPI	GCANNNNNTGC	1 cut(s)	161
BstC8I	GCNNGC	7 cut(s)	157, 166, 208, 224, 256, 271, 286
BstDSI	CCRYGG	1 cut(s)	298
BstF5I	GGATG	1 cut(s)	20
BstFNI	CGCG	1 cut(s)	152
BstHHI	GCGC	1 cut(s)	152
BstMWI	GCNNNNNNNGC	6 cut(s)	156, 161, 165, 216, 228, 309
BstNI	CCWGG	2 cut(s)	25, 108
BstNSI	RCATGY	2 cut(s)	159, 210
BstSCI	CCNGG	3 cut(s)	23, 106, 244
BstSLI	GKGCMC	1 cut(s)	320
BstUI	CGCG	1 cut(s)	152
BstV1I	GCAGC	2 cut(s)	206, 243
BsuRI	GGCC	2 cut(s)	187, 269
BtgI	CCRYGG	1 cut(s)	298
BtsCI	GGATG	1 cut(s)	20
BtsI	GCAGTG	2 cut(s)	41, 166
BtsIMutI	CAGTG	2 cut(s)	41, 166
Cac8I	GCNNGC	7 cut(s)	157, 166, 208, 224, 256, 271, 286
CfoI	GCGC	1 cut(s)	152
Cfr10I	RCCGGY	1 cut(s)	254
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	249
CviAII	CATG	2 cut(s)	156, 207
CviJI	RGCY	7 cut(s)	5, 29, 83, 187, 234, 269, 288
CviKI_1	RGCY	7 cut(s)	5, 29, 83, 187, 234, 269, 288
CviQI	GTAC	1 cut(s)	249
Eco147I	AGGCCT	2 cut(s)	187, 269
Eco47I	GGWCC	1 cut(s)	110
EcoRII	CCWGG	2 cut(s)	23, 106
FaeI	CATG	2 cut(s)	159, 210
FaiI	YATR	3 cut(s)	157, 196, 208
FaqI	GGGAC	1 cut(s)	226
FatI	CATG	2 cut(s)	155, 206
FauI	CCCGC	1 cut(s)	203
Fnu4HI	GCNGC	6 cut(s)	6, 148, 153, 220, 232, 304
FokI	GGATG	1 cut(s)	7
Fsp4HI	GCNGC	6 cut(s)	6, 148, 153, 220, 232, 304
FspBI	CTAG	1 cut(s)	183
GlaI	GCGC	1 cut(s)	151
GluI	GCNGC	6 cut(s)	6, 148, 153, 220, 232, 304
HaeIII	GGCC	2 cut(s)	187, 269
HapII	CCGG	2 cut(s)	245, 255
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	152
Hin1II	CATG	2 cut(s)	159, 210
Hin6I	GCGC	1 cut(s)	150
HinP1I	GCGC	1 cut(s)	150
HpaII	CCGG	2 cut(s)	245, 255
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	2 cut(s)	133, 263
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	68, 85
HpyCH4V	TGCA	3 cut(s)	159, 198, 231
HpyF10VI	GCNNNNNNNGC	6 cut(s)	156, 161, 165, 216, 228, 309
Hsp92II	CATG	2 cut(s)	159, 210
HspAI	GCGC	1 cut(s)	150
KpnI	GGTACC	1 cut(s)	252
KroI	GCCGGC	1 cut(s)	254
KroNI	GCCGGC	1 cut(s)	256
Lsp1109I	GCAGC	2 cut(s)	206, 243
MaeI	CTAG	1 cut(s)	183
MaeIII	GTNAC	1 cut(s)	278
MhlI	GDGCHC	2 cut(s)	166, 320
MnlI	CCTC	5 cut(s)	140, 198, 252, 259, 299
MroNI	GCCGGC	1 cut(s)	254
MspA1I	CMGCKG	1 cut(s)	234
MspI	CCGG	2 cut(s)	245, 255
MspR9I	CCNGG	3 cut(s)	25, 108, 246
MvaI	CCWGG	2 cut(s)	25, 108
MvnI	CGCG	1 cut(s)	152
MwoI	GCNNNNNNNGC	6 cut(s)	156, 161, 165, 216, 228, 309
NaeI	GCCGGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	246
NgoMIV	GCCGGC	1 cut(s)	254
NlaIII	CATG	2 cut(s)	159, 210
NlaIV	GGNNCC	1 cut(s)	250
NspI	RCATGY	2 cut(s)	159, 210
PaeI	GCATGC	2 cut(s)	159, 210
PceI	AGGCCT	2 cut(s)	187, 269
PdiI	GCCGGC	1 cut(s)	256
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	6 cut(s)	7, 149, 154, 221, 233, 305
Psp6I	CCWGG	2 cut(s)	23, 106
PspGI	CCWGG	2 cut(s)	23, 106
PspN4I	GGNNCC	1 cut(s)	250
PspPI	GGNCC	1 cut(s)	110
PvuII	CAGCTG	1 cut(s)	234
RsaI	GTAC	1 cut(s)	250
RsaNI	GTAC	1 cut(s)	249
SatI	GCNGC	6 cut(s)	6, 148, 153, 220, 232, 304
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	3 cut(s)	25, 108, 246
SduI	GDGCHC	2 cut(s)	166, 320
SetI	ASST	3 cut(s)	85, 96, 236
SinI	GGWCC	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	131
SmoI	CTYRAG	1 cut(s)	131
SphI	GCATGC	2 cut(s)	159, 210
SseBI	AGGCCT	2 cut(s)	187, 269
SsiI	CCGC	5 cut(s)	147, 152, 210, 252, 303
SspMI	CTAG	1 cut(s)	183
StuI	AGGCCT	2 cut(s)	187, 269
StyD4I	CCNGG	3 cut(s)	23, 106, 244
TauI	GCSGC	3 cut(s)	150, 155, 306
TscAI	CASTG	2 cut(s)	48, 166
TseI	GCWGC	3 cut(s)	5, 219, 231
TspRI	CASTG	2 cut(s)	48, 166
VpaK11BI	GGWCC	1 cut(s)	110
XceI	RCATGY	2 cut(s)	159, 210
XspI	CTAG	1 cut(s)	183

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.