Rorug06G0317500

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0012771
Physical Location & Seq
Reverse (-)
46927418 .. 46927720
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0317500.1

Sequence Viewer

Length: 273 bp
ATGGCAATTAACTTCTTAAAAGAGTTTACAAAACCAAAGCAGTGTGGGGGGATTCATATTCAGAATTACAGATGGAGAACCTGTTCTTGCAGCCTCAAACTAGTAGGTCCTACTAATGTTTTAACTACTGAAGCATTAGCTTTGAGAGCAGGCCTTCATGCTGCATTAATTCATGGATTCTCATATTTGGAAGTGGAAGGTGATTCCAAAATTCTTATCAATAGTCTAATGGGATGCATTCAAACTCCTTGGAGAATCAAGAAGCTGGTCTAG

Protein Analysis

90

Amino Acids

10.06

Weight (kDa)

9.46

Isoelectric Point (pI)

25.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RVT_3 PF13456 28 - 78 1.4e-07 Reverse transcriptase-like
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75750 AT1G75750
fragaria_vesca FvH4_2g38480
malus_domestica MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica Prupe.1G365600_v2.0.a1
pyrus_communis pycom08g01160 pycom15g01090
rosa_chinensis RchiOBHm_Chr6g0302821
rosa_laevigata RLG00000011135
rosa_roxburghii Rroxscaffold_7G00165290
rosa_rugosa Rorug06G0317500
rosa_samantha Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana Rw6G037310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 210
AcuI CTGAAG 1 cut(s) 150
AgsI TTSAA 1 cut(s) 242
AhlI ACTAGT 1 cut(s) 100
AloI GAACNNNNNNTCC 2 cut(s) 67, 99
AluBI AGCT 2 cut(s) 140, 265
AluI AGCT 2 cut(s) 140, 265
AoxI GGCC 1 cut(s) 151
ApeKI GCWGC 2 cut(s) 90, 161
ApoI RAATTY 1 cut(s) 210
AseI ATTAAT 1 cut(s) 167
Asp700I GAANNNNTTC 1 cut(s) 82
AspS9I GGNCC 1 cut(s) 107
AsuHPI GGTGA 1 cut(s) 212
AvaII GGWCC 1 cut(s) 107
BbvI GCAGC 2 cut(s) 102, 148
BccI CCATC 1 cut(s) 66
BcuI ACTAGT 1 cut(s) 100
BfaI CTAG 2 cut(s) 101, 271
BisI GCNGC 2 cut(s) 91, 162
BlsI GCNGC 2 cut(s) 92, 163
Bme18I GGWCC 1 cut(s) 107
BmgT120I GGNCC 1 cut(s) 107
BmsI GCATC 1 cut(s) 224
BsaJI CCNNGG 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
BseDI CCNNGG 1 cut(s) 248
BseGI GGATG 1 cut(s) 239
BseXI GCAGC 2 cut(s) 102, 148
BshFI GGCC 1 cut(s) 153
BsmI GAATGC 1 cut(s) 237
BsnI GGCC 1 cut(s) 153
BspANI GGCC 1 cut(s) 153
BssECI CCNNGG 1 cut(s) 248
BssT1I CCWWGG 1 cut(s) 248
BstC8I GCNNGC 1 cut(s) 151
BstF5I GGATG 1 cut(s) 239
BstMWI GCNNNNNNNGC 1 cut(s) 146
BstV1I GCAGC 2 cut(s) 102, 148
BsuRI GGCC 1 cut(s) 153
BtsCI GGATG 1 cut(s) 239
BtsI GCAGTG 1 cut(s) 47
BtsIMutI CAGTG 1 cut(s) 47
Cac8I GCNNGC 1 cut(s) 151
Cfr13I GGNCC 1 cut(s) 107
CviAII CATG 2 cut(s) 158, 173
CviJI RGCY 4 cut(s) 93, 140, 153, 265
CviKI_1 RGCY 4 cut(s) 93, 140, 153, 265
Eco130I CCWWGG 1 cut(s) 248
Eco147I AGGCCT 1 cut(s) 153
Eco47I GGWCC 1 cut(s) 107
Eco57I CTGAAG 1 cut(s) 150
EcoO109I RGGNCCY 1 cut(s) 107
EcoT14I CCWWGG 1 cut(s) 248
EcoT22I ATGCAT 1 cut(s) 239
ErhI CCWWGG 1 cut(s) 248
FaeI CATG 2 cut(s) 161, 176
FaiI YATR 4 cut(s) 57, 159, 174, 184
FatI CATG 2 cut(s) 157, 172
Fnu4HI GCNGC 2 cut(s) 91, 162
FokI GGATG 1 cut(s) 246
Fsp4HI GCNGC 2 cut(s) 91, 162
FspBI CTAG 2 cut(s) 101, 271
GluI GCNGC 2 cut(s) 91, 162
HaeIII GGCC 1 cut(s) 153
Hin1II CATG 2 cut(s) 161, 176
HinfI GANTC 4 cut(s) 52, 177, 203, 255
HphI GGTGA 1 cut(s) 212
Hpy166II GTNNAC 1 cut(s) 27
Hpy188I TCNGA 1 cut(s) 63
Hpy188III TCNNGA 1 cut(s) 259
Hpy8I GTNNAC 1 cut(s) 27
HpyAV CCTTC 2 cut(s) 164, 191
HpyCH4V TGCA 3 cut(s) 90, 164, 237
HpyF10VI GCNNNNNNNGC 1 cut(s) 146
Hsp92II CATG 2 cut(s) 161, 176
LpnPI CCDG 3 cut(s) 94, 135, 251
Lsp1109I GCAGC 2 cut(s) 102, 148
LweI GCATC 1 cut(s) 224
MaeI CTAG 2 cut(s) 101, 271
MluCI AATT 4 cut(s) 6, 64, 168, 210
MnlI CCTC 1 cut(s) 104
Mph1103I ATGCAT 1 cut(s) 239
MroXI GAANNNNTTC 1 cut(s) 82
MseI TTAA 4 cut(s) 9, 17, 122, 167
Mva1269I GAATGC 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 146
NlaIII CATG 2 cut(s) 161, 176
NsiI ATGCAT 1 cut(s) 239
PceI AGGCCT 1 cut(s) 153
PctI GAATGC 1 cut(s) 237
PdmI GAANNNNTTC 1 cut(s) 82
PfeI GAWTC 4 cut(s) 52, 177, 203, 255
PkrI GCNGC 2 cut(s) 92, 163
PpuMI RGGWCCY 1 cut(s) 107
PshBI ATTAAT 1 cut(s) 167
Psp5II RGGWCCY 1 cut(s) 107
PspPI GGNCC 1 cut(s) 107
PspPPI RGGWCCY 1 cut(s) 107
SaqAI TTAA 4 cut(s) 9, 17, 122, 167
SatI GCNGC 2 cut(s) 91, 162
Sau96I GGNCC 1 cut(s) 107
SetI ASST 5 cut(s) 83, 109, 142, 202, 267
SfaNI GCATC 1 cut(s) 224
SgeI CNNG 7 cut(s) 93, 99, 113, 162, 170, 185, 261
SinI GGWCC 1 cut(s) 107
SpeI ACTAGT 1 cut(s) 100
Sse9I AATT 4 cut(s) 6, 64, 168, 210
SseBI AGGCCT 1 cut(s) 153
SspMI CTAG 2 cut(s) 101, 271
StuI AGGCCT 1 cut(s) 153
StyI CCWWGG 1 cut(s) 248
TasI AATT 4 cut(s) 6, 64, 168, 210
TfiI GAWTC 4 cut(s) 52, 177, 203, 255
Tru1I TTAA 4 cut(s) 9, 17, 122, 167
Tru9I TTAA 4 cut(s) 9, 17, 122, 167
TscAI CASTG 1 cut(s) 47
TseI GCWGC 2 cut(s) 90, 161
TspDTI ATGAA 3 cut(s) 44, 146, 161
TspRI CASTG 1 cut(s) 47
VpaK11BI GGWCC 1 cut(s) 107
VspI ATTAAT 1 cut(s) 167
XapI RAATTY 1 cut(s) 210
XmnI GAANNNNTTC 1 cut(s) 82
XspI CTAG 2 cut(s) 101, 271
Zsp2I ATGCAT 1 cut(s) 239
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.