Rh6BG472000

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0012771
Physical Location & Seq
Forward (+)
67921005 .. 67924386
3382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG472000.1

Sequence Viewer

Length: 273 bp
ATGCCTGGCAATGTGCAGTGTTCACCTGTTTTGGTCCCCAACCAATATATAAAAGGTCAAAGGGGGAAGCAGAGAACGAAACGCTGGTTTGACTGCGGTGGAGCGTGCACTGCGAGGTGTCGTTTATCATCTCGGCCTCGGCTGTGCAAGAGGGCATGCGGGACTTGCTGCCAGCGTTGTAGCTGCGTCCCTCCCGGCACGGCTGGAAACTACGACGTCTGCCCCTGTTACGCTAGCCTCACCACCCACGGCGGCAGACGCAAGTGTCCTTAA

Protein Analysis

90

Amino Acids

9.83

Weight (kDa)

9.63

Isoelectric Point (pI)

72.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 31 - 90 7.1e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75750 AT1G75750
fragaria_vesca FvH4_2g38480
malus_domestica MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica Prupe.1G365600_v2.0.a1
pyrus_communis pycom08g01160 pycom15g01090
rosa_chinensis RchiOBHm_Chr6g0302821
rosa_laevigata RLG00000011135
rosa_roxburghii Rroxscaffold_7G00165290
rosa_rugosa Rorug06G0317500
rosa_samantha Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana Rw6G037310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 264
AatII GACGTC 1 cut(s) 219
AciI CCGC 3 cut(s) 96, 159, 252
AcyI GRCGYC 1 cut(s) 216
AjnI CCWGG 1 cut(s) 4
AluBI AGCT 1 cut(s) 183
AluI AGCT 1 cut(s) 183
Alw21I GWGCWC 1 cut(s) 110
Alw44I GTGCAC 1 cut(s) 106
AoxI GGCC 1 cut(s) 134
ApaLI GTGCAC 1 cut(s) 106
ApeKI GCWGC 2 cut(s) 168, 183
AspS9I GGNCC 1 cut(s) 34
AsuC2I CCSGG 1 cut(s) 195
AsuHPI GGTGA 2 cut(s) 15, 232
AsuNHI GCTAGC 1 cut(s) 233
AvaII GGWCC 1 cut(s) 34
BaeGI GKGCMC 1 cut(s) 110
Bbv12I GWGCWC 1 cut(s) 110
BbvI GCAGC 2 cut(s) 155, 170
BceAI ACGGC 2 cut(s) 216, 265
BciT130I CCWGG 1 cut(s) 6
BcnI CCSGG 1 cut(s) 195
BfaI CTAG 1 cut(s) 234
BisI GCNGC 3 cut(s) 169, 184, 253
BlsI GCNGC 3 cut(s) 170, 185, 254
Bme1390I CCNGG 2 cut(s) 6, 195
Bme18I GGWCC 1 cut(s) 34
BmgT120I GGNCC 1 cut(s) 34
BmiI GGNNCC 1 cut(s) 36
BmrFI CCNGG 2 cut(s) 6, 195
BmtI GCTAGC 1 cut(s) 237
BpuMI CCSGG 1 cut(s) 195
BsaHI GRCGYC 1 cut(s) 216
BsaJI CCNNGG 2 cut(s) 137, 247
Bse3DI GCAATG 1 cut(s) 16
BseBI CCWGG 1 cut(s) 6
BseDI CCNNGG 2 cut(s) 137, 247
BseMI GCAATG 1 cut(s) 16
BseSI GKGCMC 1 cut(s) 110
BseXI GCAGC 2 cut(s) 155, 170
BsgI GTGCAG 1 cut(s) 35
BshFI GGCC 1 cut(s) 136
BsiHKAI GWGCWC 1 cut(s) 110
BsiSI CCGG 1 cut(s) 195
BslFI GGGAC 3 cut(s) 20, 173, 175
BsmFI GGGAC 3 cut(s) 20, 173, 175
BsnI GGCC 1 cut(s) 136
Bsp1286I GDGCHC 1 cut(s) 110
BspACI CCGC 3 cut(s) 96, 159, 252
BspANI GGCC 1 cut(s) 136
BspLI GGNNCC 1 cut(s) 36
BspOI GCTAGC 1 cut(s) 237
BsrDI GCAATG 1 cut(s) 16
BssECI CCNNGG 2 cut(s) 137, 247
BssNI GRCGYC 1 cut(s) 216
Bst2UI CCWGG 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 216
BstC8I GCNNGC 4 cut(s) 106, 157, 173, 235
BstDSI CCRYGG 1 cut(s) 247
BstMWI GCNNNNNNNGC 3 cut(s) 110, 165, 258
BstNI CCWGG 1 cut(s) 6
BstNSI RCATGY 1 cut(s) 159
BstSCI CCNGG 2 cut(s) 4, 193
BstSLI GKGCMC 1 cut(s) 110
BstV1I GCAGC 2 cut(s) 155, 170
BsuRI GGCC 1 cut(s) 136
BtgI CCRYGG 1 cut(s) 247
BtsI GCAGTG 2 cut(s) 23, 108
BtsIMutI CAGTG 2 cut(s) 23, 108
Cac8I GCNNGC 4 cut(s) 106, 157, 173, 235
Cfr13I GGNCC 1 cut(s) 34
CseI GACGC 2 cut(s) 175, 267
CviAII CATG 1 cut(s) 156
CviJI RGCY 5 cut(s) 136, 142, 183, 203, 237
CviKI_1 RGCY 5 cut(s) 136, 142, 183, 203, 237
DrdI GACNNNNNNGTC 1 cut(s) 264
DseDI GACNNNNNNGTC 1 cut(s) 264
Eco47I GGWCC 1 cut(s) 34
EcoRII CCWGG 1 cut(s) 4
FaeI CATG 1 cut(s) 159
FaiI YATR 3 cut(s) 48, 50, 157
FaqI GGGAC 3 cut(s) 20, 173, 175
FatI CATG 1 cut(s) 155
FauI CCCGC 1 cut(s) 152
Fnu4HI GCNGC 3 cut(s) 169, 184, 253
Fsp4HI GCNGC 3 cut(s) 169, 184, 253
FspBI CTAG 1 cut(s) 234
GluI GCNGC 3 cut(s) 169, 184, 253
HaeIII GGCC 1 cut(s) 136
HapII CCGG 1 cut(s) 195
HgaI GACGC 2 cut(s) 175, 267
Hin1I GRCGYC 1 cut(s) 216
Hin1II CATG 1 cut(s) 159
HpaII CCGG 1 cut(s) 195
HphI GGTGA 2 cut(s) 15, 232
Hpy166II GTNNAC 2 cut(s) 23, 108
Hpy8I GTNNAC 2 cut(s) 23, 108
Hpy99I CGWCG 1 cut(s) 218
HpyCH4IV ACGT 1 cut(s) 216
HpyCH4V TGCA 3 cut(s) 16, 108, 147
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 165, 258
HpySE526I ACGT 1 cut(s) 216
Hsp92I GRCGYC 1 cut(s) 216
Hsp92II CATG 1 cut(s) 159
LmnI GCTCC 1 cut(s) 101
LpnPI CCDG 7 cut(s) 18, 39, 70, 185, 189, 208, 238
Lsp1109I GCAGC 2 cut(s) 155, 170
MaeI CTAG 1 cut(s) 234
MaeII ACGT 1 cut(s) 216
MaeIII GTNAC 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 110
MnlI CCTC 5 cut(s) 108, 144, 147, 201, 248
MseI TTAA 1 cut(s) 271
MspI CCGG 1 cut(s) 195
MspR9I CCNGG 2 cut(s) 6, 195
MvaI CCWGG 1 cut(s) 6
MwoI GCNNNNNNNGC 3 cut(s) 110, 165, 258
NciI CCSGG 1 cut(s) 195
NheI GCTAGC 1 cut(s) 233
NlaIII CATG 1 cut(s) 159
NlaIV GGNNCC 1 cut(s) 36
NmeAIII GCCGAG 2 cut(s) 112, 118
NspI RCATGY 1 cut(s) 159
PaeI GCATGC 1 cut(s) 159
PkrI GCNGC 3 cut(s) 170, 185, 254
Psp6I CCWGG 1 cut(s) 4
PspGI CCWGG 1 cut(s) 4
PspN4I GGNNCC 1 cut(s) 36
PspPI GGNCC 1 cut(s) 34
SaqAI TTAA 1 cut(s) 271
SatI GCNGC 3 cut(s) 169, 184, 253
Sau96I GGNCC 1 cut(s) 34
ScrFI CCNGG 2 cut(s) 6, 195
SduI GDGCHC 1 cut(s) 110
SetI ASST 5 cut(s) 28, 58, 119, 185, 219
SinI GGWCC 1 cut(s) 34
SphI GCATGC 1 cut(s) 159
SsiI CCGC 3 cut(s) 96, 159, 252
SspMI CTAG 1 cut(s) 234
StyD4I CCNGG 2 cut(s) 4, 193
TaiI ACGT 1 cut(s) 219
TauI GCSGC 1 cut(s) 255
Tru1I TTAA 1 cut(s) 271
Tru9I TTAA 1 cut(s) 271
TscAI CASTG 2 cut(s) 23, 115
TseI GCWGC 2 cut(s) 168, 183
TspRI CASTG 2 cut(s) 23, 115
VneI GTGCAC 1 cut(s) 106
VpaK11BI GGWCC 1 cut(s) 34
XceI RCATGY 1 cut(s) 159
XspI CTAG 1 cut(s) 234
ZraI GACGTC 1 cut(s) 217
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.