Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0012771

Physical Location & Seq

Genomic Coordinates Reverse (-)

19540523 .. 19541429

Gene Structure 907 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1092500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 315 bp

ATGTCGGCCATCTCGACCTCATCAAGGGTTGTGATTGTTTCACTACTCTTTTCCCTTCTTGTTCTCACACTCGTCGAAGCTGATGAGAAGGTAAACAACAATCCAGAACAGACTTCTCTCCTCAAGAAAATAGACTGTGGCGGAGCATGCAGTGCTCGATGTCGTTTATCATCGAGGCCTCATCTCTGCAAGAGGGCATGCGGGACTTGTTGCCAGCGTTGCAGCTGTGTTCCTCCAGGTACCGCCGGCAATCTTGAGACCTGCCCGTGTTACGCCACCCTCACCACCCACGGCGGCAGACGCAAGTGTCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

105

Amino Acids

11.06

Weight (kDa)

8.93

Isoelectric Point (pI)

48.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GASA	PF02704	45 - 104	1.4e-21	Gibberellin regulated protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Orthologous Genes (Group: OG0012771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75750 AT1G75750
fragaria_vesca	FvH4_2g38480
malus_domestica	MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica	Prupe.1G365600_v2.0.a1
pyrus_communis	pycom08g01160 pycom15g01090
rosa_chinensis	RchiOBHm_Chr6g0302821
rosa_laevigata	RLG00000011135
rosa_roxburghii	Rroxscaffold_7G00165290
rosa_rugosa	Rorug06G0317500
rosa_samantha	Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana	Rw6G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	306
Acc36I	ACCTGC	1 cut(s)	269
Acc65I	GGTACC	1 cut(s)	239
AccB1I	GGYRCC	1 cut(s)	239
AciI	CCGC	4 cut(s)	141, 201, 243, 294
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	241
AfiI	CCNNNNNNNGG	1 cut(s)	24
AjnI	CCWGG	1 cut(s)	235
AluBI	AGCT	2 cut(s)	80, 225
AluI	AGCT	2 cut(s)	80, 225
Alw21I	GWGCWC	1 cut(s)	157
Alw26I	GTCTC	1 cut(s)	251
AoxI	GGCC	2 cut(s)	6, 176
ApeKI	GCWGC	1 cut(s)	222
Asp718I	GGTACC	1 cut(s)	239
AsuHPI	GGTGA	1 cut(s)	274
BanI	GGYRCC	1 cut(s)	239
Bbv12I	GWGCWC	1 cut(s)	157
BbvI	GCAGC	1 cut(s)	234
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	307
BciT130I	CCWGG	1 cut(s)	237
BcoDI	GTCTC	1 cut(s)	251
BfuAI	ACCTGC	1 cut(s)	269
BisI	GCNGC	2 cut(s)	223, 295
BlsI	GCNGC	2 cut(s)	224, 296
Bme1390I	CCNGG	1 cut(s)	237
BmiI	GGNNCC	1 cut(s)	241
BmrFI	CCNGG	1 cut(s)	237
BpmI	CTGGAG	1 cut(s)	219
BpuEI	CTTGAG	2 cut(s)	107, 275
BsaI	GGTCTC	1 cut(s)	251
BsaJI	CCNNGG	1 cut(s)	289
Bsc4I	CCNNNNNNNGG	1 cut(s)	24
Bse118I	RCCGGY	1 cut(s)	245
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	289
BseLI	CCNNNNNNNGG	1 cut(s)	24
BseRI	GAGGAG	1 cut(s)	110
BseXI	GCAGC	1 cut(s)	234
BshFI	GGCC	2 cut(s)	8, 178
BshNI	GGYRCC	1 cut(s)	239
BsiHKAI	GWGCWC	1 cut(s)	157
BsiSI	CCGG	1 cut(s)	246
BslFI	GGGAC	1 cut(s)	217
BslI	CCNNNNNNNGG	1 cut(s)	24
BsmAI	GTCTC	1 cut(s)	251
BsmFI	GGGAC	1 cut(s)	217
BsnI	GGCC	2 cut(s)	8, 178
Bso31I	GGTCTC	1 cut(s)	251
Bsp1286I	GDGCHC	1 cut(s)	157
BspACI	CCGC	4 cut(s)	141, 201, 243, 294
BspANI	GGCC	2 cut(s)	8, 178
BspLI	GGNNCC	1 cut(s)	241
BspMI	ACCTGC	1 cut(s)	269
BspT107I	GGYRCC	1 cut(s)	239
BspTNI	GGTCTC	1 cut(s)	251
BsrFI	RCCGGY	1 cut(s)	245
BssAI	RCCGGY	1 cut(s)	245
BssECI	CCNNGG	1 cut(s)	289
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	137
BstAPI	GCANNNNNTGC	1 cut(s)	152
BstC8I	GCNNGC	4 cut(s)	148, 199, 215, 247
BstDSI	CCRYGG	1 cut(s)	289
BstENI	CCTNNNNNAGG	1 cut(s)	22
BstMAI	GTCTC	1 cut(s)	251
BstMWI	GCNNNNNNNGC	4 cut(s)	147, 152, 219, 300
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	2 cut(s)	150, 201
BstSCI	CCNGG	1 cut(s)	235
BstV1I	GCAGC	1 cut(s)	234
BsuRI	GGCC	2 cut(s)	8, 178
BtgI	CCRYGG	1 cut(s)	289
BtsI	GCAGTG	1 cut(s)	157
BtsIMutI	CAGTG	1 cut(s)	157
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	4 cut(s)	148, 199, 215, 247
Cfr10I	RCCGGY	1 cut(s)	245
CseI	GACGC	1 cut(s)	309
Csp6I	GTAC	1 cut(s)	240
CviAII	CATG	2 cut(s)	147, 198
CviJI	RGCY	4 cut(s)	8, 80, 178, 225
CviKI_1	RGCY	4 cut(s)	8, 80, 178, 225
CviQI	GTAC	1 cut(s)	240
DrdI	GACNNNNNNGTC	1 cut(s)	306
DseDI	GACNNNNNNGTC	1 cut(s)	306
EaeI	YGGCCR	1 cut(s)	6
EciI	GGCGGA	1 cut(s)	156
Eco147I	AGGCCT	1 cut(s)	178
Eco31I	GGTCTC	1 cut(s)	251
EcoNI	CCTNNNNNAGG	1 cut(s)	22
EcoRII	CCWGG	1 cut(s)	235
FaeI	CATG	2 cut(s)	150, 201
FaiI	YATR	2 cut(s)	148, 199
FaqI	GGGAC	1 cut(s)	217
FatI	CATG	2 cut(s)	146, 197
FauI	CCCGC	1 cut(s)	194
Fnu4HI	GCNGC	2 cut(s)	223, 295
Fsp4HI	GCNGC	2 cut(s)	223, 295
GluI	GCNGC	2 cut(s)	223, 295
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	2 cut(s)	8, 178
HapII	CCGG	1 cut(s)	246
HgaI	GACGC	1 cut(s)	309
Hin1II	CATG	2 cut(s)	150, 201
HpaII	CCGG	1 cut(s)	246
HphI	GGTGA	1 cut(s)	274
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	4 cut(s)	13, 104, 124, 254
Hpy8I	GTNNAC	1 cut(s)	94
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	2 cut(s)	65, 82
HpyCH4III	ACNGT	1 cut(s)	137
HpyCH4V	TGCA	3 cut(s)	150, 189, 222
HpyF10VI	GCNNNNNNNGC	4 cut(s)	147, 152, 219, 300
Hsp92II	CATG	2 cut(s)	150, 201
KpnI	GGTACC	1 cut(s)	243
KroI	GCCGGC	1 cut(s)	245
KroNI	GCCGGC	1 cut(s)	247
LmnI	GCTCC	1 cut(s)	143
LpnPI	CCDG	6 cut(s)	117, 222, 227, 249, 259, 274
Lsp1109I	GCAGC	1 cut(s)	234
MaeIII	GTNAC	1 cut(s)	269
MhlI	GDGCHC	1 cut(s)	157
MnlI	CCTC	7 cut(s)	28, 131, 168, 186, 189, 243, 290
MroNI	GCCGGC	1 cut(s)	245
MseI	TTAA	1 cut(s)	313
MspA1I	CMGCKG	1 cut(s)	225
MspI	CCGG	1 cut(s)	246
MspR9I	CCNGG	1 cut(s)	237
MvaI	CCWGG	1 cut(s)	237
MwoI	GCNNNNNNNGC	4 cut(s)	147, 152, 219, 300
NaeI	GCCGGC	1 cut(s)	247
NgoMIV	GCCGGC	1 cut(s)	245
NlaIII	CATG	2 cut(s)	150, 201
NlaIV	GGNNCC	1 cut(s)	241
NspI	RCATGY	2 cut(s)	150, 201
PaeI	GCATGC	2 cut(s)	150, 201
PceI	AGGCCT	1 cut(s)	178
PcsI	WCGNNNNNNNCGW	1 cut(s)	11
PdiI	GCCGGC	1 cut(s)	247
PkrI	GCNGC	2 cut(s)	224, 296
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	241
PvuII	CAGCTG	1 cut(s)	225
RsaI	GTAC	1 cut(s)	241
RsaNI	GTAC	1 cut(s)	240
SaqAI	TTAA	1 cut(s)	313
SatI	GCNGC	2 cut(s)	223, 295
ScrFI	CCNGG	1 cut(s)	237
SduI	GDGCHC	1 cut(s)	157
SetI	ASST	6 cut(s)	20, 82, 93, 227, 241, 263
SmlI	CTYRAG	2 cut(s)	122, 254
SmoI	CTYRAG	2 cut(s)	122, 254
SphI	GCATGC	2 cut(s)	150, 201
SseBI	AGGCCT	1 cut(s)	178
SsiI	CCGC	4 cut(s)	141, 201, 243, 294
StuI	AGGCCT	1 cut(s)	178
StyD4I	CCNGG	1 cut(s)	235
TaaI	ACNGT	1 cut(s)	137
TaqI	TCGA	4 cut(s)	14, 75, 157, 173
TauI	GCSGC	1 cut(s)	297
Tru1I	TTAA	1 cut(s)	313
Tru9I	TTAA	1 cut(s)	313
TscAI	CASTG	1 cut(s)	157
TseI	GCWGC	1 cut(s)	222
TspRI	CASTG	1 cut(s)	157
XagI	CCTNNNNNAGG	1 cut(s)	22
XceI	RCATGY	2 cut(s)	150, 201

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.