Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr15

Orthogroup ID

OG0012771

Physical Location & Seq

Genomic Coordinates Forward (+)

585010 .. 585578

Gene Structure 569 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom15g01090.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 303 bp

ATGGCTGCCATCTCAAAATCATCTAGGGCTGTGATTGTTTCACTGCTTCTCGTTTCCCTTCTTGTTTTCAATCTCGTTGAAGCTGATGAGAAGGTAAACACAAATCCAGGACCAGAACAGAACTGTGGCGGGGCATGCAGTGCTCGCTGTCGTTTATCATCTAGGCCTAATCTATGCAAGAGAGCATGCGGGACTTGCTGCCAGCGTTGCAATTGTGTTCCTCCGGGTACCGCCGGCAATCAAGAGGCCTGCCCGTGTTACGCCAGCCTCACTACCCACGGCGGCAGACGCAAGTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0001101 GO:0005575 GO:0005576 GO:0005618 GO:0005623 GO:0008150 GO:0009505 GO:0009653 GO:0009719 GO:0009725 GO:0009737 GO:0009739 GO:0009741 GO:0009826 GO:0009987 GO:0010033 GO:0014070 GO:0016043 GO:0016049 GO:0030312 GO:0032502 GO:0032989 GO:0033993 GO:0040007 GO:0042221 GO:0044464 GO:0048589 GO:0048856 GO:0048869 GO:0050896 GO:0060560 GO:0071840 GO:0071944 GO:0097305 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

GASA

Protein Analysis

101

Amino Acids

10.49

Weight (kDa)

8.94

Isoelectric Point (pI)

47.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012771)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G75750 AT1G75750
fragaria_vesca	FvH4_2g38480
malus_domestica	MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica	Prupe.1G365600_v2.0.a1
pyrus_communis	pycom08g01160 pycom15g01090
rosa_chinensis	RchiOBHm_Chr6g0302821
rosa_laevigata	RLG00000011135
rosa_roxburghii	Rroxscaffold_7G00165290
rosa_rugosa	Rorug06G0317500
rosa_samantha	Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana	Rw6G037310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	227
AccB1I	GGYRCC	1 cut(s)	227
AciI	CCGC	4 cut(s)	129, 189, 231, 282
AfaI	GTAC	1 cut(s)	229
AgsI	TTSAA	2 cut(s)	70, 80
AjnI	CCWGG	1 cut(s)	106
AluBI	AGCT	1 cut(s)	83
AluI	AGCT	1 cut(s)	83
Alw21I	GWGCWC	1 cut(s)	145
AoxI	GGCC	2 cut(s)	164, 246
ApeKI	GCWGC	2 cut(s)	5, 198
Asp718I	GGTACC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	110
BaeGI	GKGCMC	1 cut(s)	299
BanI	GGYRCC	1 cut(s)	227
Bbv12I	GWGCWC	1 cut(s)	145
BbvI	GCAGC	1 cut(s)	185
BccI	CCATC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	295
BciT130I	CCWGG	1 cut(s)	108
BcnI	CCSGG	1 cut(s)	225
BfaI	CTAG	2 cut(s)	24, 162
BisI	GCNGC	3 cut(s)	6, 199, 283
BlsI	GCNGC	3 cut(s)	7, 200, 284
Bme1390I	CCNGG	2 cut(s)	108, 225
Bme18I	GGWCC	1 cut(s)	110
BmgT120I	GGNCC	1 cut(s)	110
BmiI	GGNNCC	1 cut(s)	229
BmrFI	CCNGG	2 cut(s)	108, 225
BpuMI	CCSGG	1 cut(s)	225
BsaJI	CCNNGG	1 cut(s)	277
Bse118I	RCCGGY	1 cut(s)	233
BseBI	CCWGG	1 cut(s)	108
BseDI	CCNNGG	1 cut(s)	277
BseSI	GKGCMC	1 cut(s)	299
BseXI	GCAGC	1 cut(s)	185
BshFI	GGCC	2 cut(s)	166, 248
BshNI	GGYRCC	1 cut(s)	227
BsiHKAI	GWGCWC	1 cut(s)	145
BsiSI	CCGG	2 cut(s)	224, 234
BslFI	GGGAC	1 cut(s)	205
BsmFI	GGGAC	1 cut(s)	205
BsnI	GGCC	2 cut(s)	166, 248
Bsp1286I	GDGCHC	2 cut(s)	145, 299
BspACI	CCGC	4 cut(s)	129, 189, 231, 282
BspANI	GGCC	2 cut(s)	166, 248
BspLI	GGNNCC	1 cut(s)	229
BspT107I	GGYRCC	1 cut(s)	227
BsrFI	RCCGGY	1 cut(s)	233
BssAI	RCCGGY	1 cut(s)	233
BssECI	CCNNGG	1 cut(s)	277
Bst2UI	CCWGG	1 cut(s)	108
Bst4CI	ACNGT	1 cut(s)	125
BstAPI	GCANNNNNTGC	1 cut(s)	140
BstC8I	GCNNGC	7 cut(s)	136, 145, 187, 203, 235, 250, 265
BstDSI	CCRYGG	1 cut(s)	277
BstMWI	GCNNNNNNNGC	6 cut(s)	135, 140, 144, 195, 207, 288
BstNI	CCWGG	1 cut(s)	108
BstNSI	RCATGY	2 cut(s)	138, 189
BstSCI	CCNGG	2 cut(s)	106, 223
BstSLI	GKGCMC	1 cut(s)	299
BstV1I	GCAGC	1 cut(s)	185
BsuRI	GGCC	2 cut(s)	166, 248
BtgI	CCRYGG	1 cut(s)	277
BtsI	GCAGTG	2 cut(s)	41, 145
BtsIMutI	CAGTG	2 cut(s)	41, 145
Cac8I	GCNNGC	7 cut(s)	136, 145, 187, 203, 235, 250, 265
Cfr10I	RCCGGY	1 cut(s)	233
Cfr13I	GGNCC	1 cut(s)	110
CseI	GACGC	1 cut(s)	297
Csp6I	GTAC	1 cut(s)	228
CviAII	CATG	2 cut(s)	135, 186
CviJI	RGCY	6 cut(s)	5, 29, 83, 166, 248, 267
CviKI_1	RGCY	6 cut(s)	5, 29, 83, 166, 248, 267
CviQI	GTAC	1 cut(s)	228
Eco147I	AGGCCT	2 cut(s)	166, 248
Eco47I	GGWCC	1 cut(s)	110
EcoRII	CCWGG	1 cut(s)	106
FaeI	CATG	2 cut(s)	138, 189
FaiI	YATR	3 cut(s)	136, 175, 187
FaqI	GGGAC	1 cut(s)	205
FatI	CATG	2 cut(s)	134, 185
FauI	CCCGC	2 cut(s)	122, 182
Fnu4HI	GCNGC	3 cut(s)	6, 199, 283
Fsp4HI	GCNGC	3 cut(s)	6, 199, 283
FspBI	CTAG	2 cut(s)	24, 162
GluI	GCNGC	3 cut(s)	6, 199, 283
HaeIII	GGCC	2 cut(s)	166, 248
HapII	CCGG	2 cut(s)	224, 234
HgaI	GACGC	1 cut(s)	297
Hin1II	CATG	2 cut(s)	138, 189
HpaII	CCGG	2 cut(s)	224, 234
Hpy166II	GTNNAC	1 cut(s)	97
Hpy188III	TCNNGA	1 cut(s)	242
Hpy8I	GTNNAC	1 cut(s)	97
HpyAV	CCTTC	2 cut(s)	68, 85
HpyCH4III	ACNGT	1 cut(s)	125
HpyCH4V	TGCA	3 cut(s)	138, 177, 210
HpyF10VI	GCNNNNNNNGC	6 cut(s)	135, 140, 144, 195, 207, 288
Hsp92II	CATG	2 cut(s)	138, 189
KpnI	GGTACC	1 cut(s)	231
KroI	GCCGGC	1 cut(s)	233
KroNI	GCCGGC	1 cut(s)	235
LpnPI	CCDG	8 cut(s)	93, 120, 126, 215, 237, 247, 262, 277
Lsp1109I	GCAGC	1 cut(s)	185
MaeI	CTAG	2 cut(s)	24, 162
MaeIII	GTNAC	1 cut(s)	257
MfeI	CAATTG	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	145, 299
MluCI	AATT	1 cut(s)	211
MnlI	CCTC	3 cut(s)	231, 238, 278
MroNI	GCCGGC	1 cut(s)	233
MspI	CCGG	2 cut(s)	224, 234
MspR9I	CCNGG	2 cut(s)	108, 225
MunI	CAATTG	1 cut(s)	211
MvaI	CCWGG	1 cut(s)	108
MwoI	GCNNNNNNNGC	6 cut(s)	135, 140, 144, 195, 207, 288
NaeI	GCCGGC	1 cut(s)	235
NciI	CCSGG	1 cut(s)	225
NgoMIV	GCCGGC	1 cut(s)	233
NlaIII	CATG	2 cut(s)	138, 189
NlaIV	GGNNCC	1 cut(s)	229
NspI	RCATGY	2 cut(s)	138, 189
PaeI	GCATGC	2 cut(s)	138, 189
PceI	AGGCCT	2 cut(s)	166, 248
PdiI	GCCGGC	1 cut(s)	235
PfoI	TCCNGGA	1 cut(s)	106
PkrI	GCNGC	3 cut(s)	7, 200, 284
Psp6I	CCWGG	1 cut(s)	106
PspGI	CCWGG	1 cut(s)	106
PspN4I	GGNNCC	1 cut(s)	229
PspPI	GGNCC	1 cut(s)	110
RsaI	GTAC	1 cut(s)	229
RsaNI	GTAC	1 cut(s)	228
SatI	GCNGC	3 cut(s)	6, 199, 283
Sau96I	GGNCC	1 cut(s)	110
ScrFI	CCNGG	2 cut(s)	108, 225
SduI	GDGCHC	2 cut(s)	145, 299
SetI	ASST	2 cut(s)	85, 96
SinI	GGWCC	1 cut(s)	110
SphI	GCATGC	2 cut(s)	138, 189
Sse9I	AATT	1 cut(s)	211
SseBI	AGGCCT	2 cut(s)	166, 248
SsiI	CCGC	4 cut(s)	129, 189, 231, 282
SspMI	CTAG	2 cut(s)	24, 162
StuI	AGGCCT	2 cut(s)	166, 248
StyD4I	CCNGG	2 cut(s)	106, 223
TaaI	ACNGT	1 cut(s)	125
TasI	AATT	1 cut(s)	211
TauI	GCSGC	1 cut(s)	285
TscAI	CASTG	2 cut(s)	48, 145
TseI	GCWGC	2 cut(s)	5, 198
TspRI	CASTG	2 cut(s)	48, 145
VpaK11BI	GGWCC	1 cut(s)	110
XceI	RCATGY	2 cut(s)	138, 189
XspI	CTAG	2 cut(s)	24, 162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.