Rh6DG429800

Gibberellin-regulated protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0012771
Physical Location & Seq
Reverse (-)
60974041 .. 60974755
715 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG429800.1

Sequence Viewer

Length: 279 bp
ATGATGATGGTTTCCCTTCTTGTTTTCAGTCCTGTTGAGGCTGATGGAGTAGTGGTGAACAACAATACACAACATGCTTCACTCCTCGATAAAACGGACTGCGGTGGAGCGTGCACCGCGAGGTGTCGTTTATCATCTCGGCCTCGGCTGTGCAAGAGGGCATGCGGGACTTGCTGCCAGCGTTGTAGCTGCGTCCCTCCCGGCACGGCTGGAAACTACGACGTCTGCCCCTGTTACGCTAGCCTCACCACCCACGGCGGCAGACGCAAGTGTCCTTAA

Protein Analysis

92

Amino Acids

9.77

Weight (kDa)

8.81

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
GASA PF02704 33 - 92 7.6e-22 Gibberellin regulated protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012771)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G75750 AT1G75750
fragaria_vesca FvH4_2g38480
malus_domestica MD00G1092500.v1.1 MD15G1012300.v1.1 MD15G1012500.v1.1
prunus_persica Prupe.1G365600_v2.0.a1
pyrus_communis pycom08g01160 pycom15g01090
rosa_chinensis RchiOBHm_Chr6g0302821
rosa_laevigata RLG00000011135
rosa_roxburghii Rroxscaffold_7G00165290
rosa_rugosa Rorug06G0317500
rosa_samantha Rh6AG430700 Rh6BG472000 Rh6CG443100 Rh6DG429800
rosa_wichuraiana Rw6G037310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 270
AatII GACGTC 1 cut(s) 225
AccII CGCG 1 cut(s) 119
AciI CCGC 4 cut(s) 102, 117, 165, 258
AcyI GRCGYC 1 cut(s) 222
AluBI AGCT 1 cut(s) 189
AluI AGCT 1 cut(s) 189
Alw21I GWGCWC 1 cut(s) 116
Alw44I GTGCAC 1 cut(s) 112
AoxI GGCC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 112
ApeKI GCWGC 2 cut(s) 174, 189
AsuC2I CCSGG 1 cut(s) 201
AsuHPI GGTGA 2 cut(s) 67, 238
AsuNHI GCTAGC 1 cut(s) 239
BaeGI GKGCMC 1 cut(s) 116
Bbv12I GWGCWC 1 cut(s) 116
BbvI GCAGC 2 cut(s) 161, 176
BccI CCATC 1 cut(s) 38
BceAI ACGGC 2 cut(s) 222, 271
BcnI CCSGG 1 cut(s) 201
BfaI CTAG 1 cut(s) 240
BisI GCNGC 3 cut(s) 175, 190, 259
BlsI GCNGC 3 cut(s) 176, 191, 260
Bme1390I CCNGG 1 cut(s) 201
BmrFI CCNGG 1 cut(s) 201
BmtI GCTAGC 1 cut(s) 243
BpuMI CCSGG 1 cut(s) 201
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 2 cut(s) 143, 253
BsaXI ACNNNNNCTCC 2 cut(s) 39, 69
BseDI CCNNGG 2 cut(s) 143, 253
BseRI GAGGAG 1 cut(s) 74
BseSI GKGCMC 1 cut(s) 116
BseXI GCAGC 2 cut(s) 161, 176
Bsh1236I CGCG 1 cut(s) 119
BshFI GGCC 1 cut(s) 142
BsiHKAI GWGCWC 1 cut(s) 116
BsiSI CCGG 1 cut(s) 201
BslFI GGGAC 2 cut(s) 179, 181
BsmFI GGGAC 2 cut(s) 179, 181
BsnI GGCC 1 cut(s) 142
Bsp1286I GDGCHC 1 cut(s) 116
BspACI CCGC 4 cut(s) 102, 117, 165, 258
BspANI GGCC 1 cut(s) 142
BspFNI CGCG 1 cut(s) 119
BspOI GCTAGC 1 cut(s) 243
BssECI CCNNGG 2 cut(s) 143, 253
BssNI GRCGYC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 112, 163, 179, 241
BstDSI CCRYGG 1 cut(s) 253
BstFNI CGCG 1 cut(s) 119
BstMWI GCNNNNNNNGC 3 cut(s) 116, 171, 264
BstNSI RCATGY 2 cut(s) 77, 165
BstSCI CCNGG 1 cut(s) 199
BstSLI GKGCMC 1 cut(s) 116
BstUI CGCG 1 cut(s) 119
BstV1I GCAGC 2 cut(s) 161, 176
BsuRI GGCC 1 cut(s) 142
BtgI CCRYGG 1 cut(s) 253
Cac8I GCNNGC 4 cut(s) 112, 163, 179, 241
CseI GACGC 2 cut(s) 181, 273
CviAII CATG 2 cut(s) 74, 162
CviJI RGCY 6 cut(s) 41, 142, 148, 189, 209, 243
CviKI_1 RGCY 6 cut(s) 41, 142, 148, 189, 209, 243
DrdI GACNNNNNNGTC 1 cut(s) 270
DseDI GACNNNNNNGTC 1 cut(s) 270
FaeI CATG 2 cut(s) 77, 165
FaiI YATR 2 cut(s) 75, 163
FaqI GGGAC 2 cut(s) 179, 181
FatI CATG 2 cut(s) 73, 161
FauI CCCGC 1 cut(s) 158
Fnu4HI GCNGC 3 cut(s) 175, 190, 259
Fsp4HI GCNGC 3 cut(s) 175, 190, 259
FspBI CTAG 1 cut(s) 240
GluI GCNGC 3 cut(s) 175, 190, 259
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 201
HgaI GACGC 2 cut(s) 181, 273
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 2 cut(s) 77, 165
HpaII CCGG 1 cut(s) 201
HphI GGTGA 2 cut(s) 67, 238
Hpy166II GTNNAC 2 cut(s) 58, 114
Hpy8I GTNNAC 2 cut(s) 58, 114
Hpy99I CGWCG 1 cut(s) 224
HpyAV CCTTC 1 cut(s) 26
HpyCH4IV ACGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 114, 153
HpyF10VI GCNNNNNNNGC 3 cut(s) 116, 171, 264
HpySE526I ACGT 1 cut(s) 222
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 2 cut(s) 77, 165
LmnI GCTCC 1 cut(s) 107
LpnPI CCDG 5 cut(s) 45, 191, 195, 214, 244
Lsp1109I GCAGC 2 cut(s) 161, 176
MaeI CTAG 1 cut(s) 240
MaeII ACGT 1 cut(s) 222
MaeIII GTNAC 1 cut(s) 233
MhlI GDGCHC 1 cut(s) 116
MnlI CCTC 7 cut(s) 31, 95, 114, 150, 153, 207, 254
MseI TTAA 1 cut(s) 277
MspI CCGG 1 cut(s) 201
MspR9I CCNGG 1 cut(s) 201
MvnI CGCG 1 cut(s) 119
MwoI GCNNNNNNNGC 3 cut(s) 116, 171, 264
NciI CCSGG 1 cut(s) 201
NheI GCTAGC 1 cut(s) 239
NlaIII CATG 2 cut(s) 77, 165
NmeAIII GCCGAG 2 cut(s) 118, 124
NspI RCATGY 2 cut(s) 77, 165
PaeI GCATGC 1 cut(s) 165
PkrI GCNGC 3 cut(s) 176, 191, 260
SaqAI TTAA 1 cut(s) 277
SatI GCNGC 3 cut(s) 175, 190, 259
ScrFI CCNGG 1 cut(s) 201
SduI GDGCHC 1 cut(s) 116
SetI ASST 3 cut(s) 125, 191, 225
SphI GCATGC 1 cut(s) 165
SsiI CCGC 4 cut(s) 102, 117, 165, 258
SspMI CTAG 1 cut(s) 240
StyD4I CCNGG 1 cut(s) 199
TaiI ACGT 1 cut(s) 225
TaqI TCGA 1 cut(s) 87
TauI GCSGC 1 cut(s) 261
Tru1I TTAA 1 cut(s) 277
Tru9I TTAA 1 cut(s) 277
TseI GCWGC 2 cut(s) 174, 189
TspGWI ACGGA 1 cut(s) 110
VneI GTGCAC 1 cut(s) 112
XceI RCATGY 2 cut(s) 77, 165
XspI CTAG 1 cut(s) 240
ZraI GACGTC 1 cut(s) 223
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.